ViewGene

Locus Name:
GeneID:
Location:

GeneID: 166

TrivialName: PA14_19850

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_19850

PAO1 Ortholog Locus: PA3420

Sequence Length: 2484

Protein Length: 827

Start: 1709952

Stop: 1712435

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06808.1|AE004763_3 (AE004763) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 821/827 (99%), Positives = 821/827 (99%)

Sequence:

ATGACCGAGCCGACCGAGCTGCCCGCCGCCTTGCCGCGGCTGCCGCCGCAGCACCTGCCGCGGCCCCGTTTG
CACCAGCCGCTGCTGCGCGGCGAATGCCGCCTGCGACTGCTCTGCGCGCCCGCCGGCAGCGGCAAGACCGTC
CTCCTCGGAGAATGCGCGCGGCGGGCGCCGCCTGGCGTGCAGGTGGTCTGGCTGGCGTTGGGCGGGGAAGCG
CTGGACCCCGTGACCTTCCGCCGCCGCCTGGCCGGCGCCCTCGGCTTGGCCGAGGACAGCGACGAAGCGCAG
CTGTGCCGGCGGCTGCGTAACGCTTCCGCGCTGTGGCTGCTGCTCGACGATTACCCACGGCACCCCGACCCC
GCCCTCGACGCCTGCCTCGATCGCCTGTTGAGCGCGGCCTCGCCACGGGTGGGCTGGTGGCTGGCGAGCCGG
CGGCGGCCGCAGTGCAACCTGGCGCGGTTGCTGCTGGAAGGGGAGTTGCTGGAGGTCGACGGCGGCCTGCTG
GCGTTCGATACCGACGAGGTCGCCGAACTGCTCCGCCTGCACGGGCGCAGCGCCGATGCCACTACGGCCGGG
GCACTGCTGGAACGCAGCGGCGGTTGGTGCGCCGCGTTGCGCTTGCGCCTGCTGGTCGGCGAAGAGACGGCC
GGACCGTTGTTGCAGGAATATCTCCAGCACGAGTTGCTCGACGAGCTGCCGCCGCCGCTGGCCGACGCCGCG
CGTGCCCTGGCCTGGCTGCCGCAAGTCGGTCCGGAGCTGTTCCGCCGGCTGTTCGAGGAGCTGCCCCACGGG
CTGGACGACCTGTTGGCGCGGGGCTTCCCCCTGCTGGCCGATGCGAACCAGCGCTACAGCCTGCCGCCGGCG
ATCCGCGAGGCCTGGCGCGAAGCGCCGCAGCGCCCGCAGCGGGACTTCCACCGGGAAGCCTGCGAATGGTTC
GCCGAACACGGCGAGACCCGCGAGGCGGTCGACCAGGCGCTGGCCGCCGACGAACCGGAAACCGCCGCCGGA
TTGTTGCAGAAGCTCACCGAGGAGCAATTGCTGCACGGCCACAACATCGGCATGGTCCTGGCCCTGCGCGAC
GAACTGCCGGCGGCGCTGCTGGCCAGCACGCCGCGCCTGGTGATCCTGAATGCCTGGACGCTGCTCTACGCC
GGACGCCTGGCCGAAGCCGAGGACTGCATCGGCCAGTTGGCGCGCTTCCTGCCGATGCCCTCGGCGTCCCGC
CAGCGGGTGCTGCTGGCGCAATGGCAGGGCTTGTTCGGGATCCTCCTGCACTGCCGCGGCGAGCGCGGCGCC
GCCGACTACCTGCGCGAGGCGCTGGAGCAACTGCCGGAGGACGCCTGGTCGCAGGGACTGATCTGCCGCTCG
GCGCTGATGCAACTGGCGATGATCGAGGGGCGGATGGACCAGGCGCGGTTGATCGGCCGCGATGCCTTGCGC
CTGGCGCGCGAGCACGACAGCCTGATCTTCGAGGCGTTGATCGAACTGGAGCGGGCGCAGTGGCTGGAGCAG
CGCGGCGAACTGCTGCGCGCGGAAGGCGTCCTCGATCGCGCCCAGCGCTACCTGGAGGACCTCGGCCAGCAG
GGCAGCCCGATGCTCGGCCGGATCGCCCTGCGCCGCGCGCGCCTGTGCCTGCAGCAGGGCCGCGAGGTCGAG
GCCGGGCACTGGTATCGGCTGGGGCTGGAGCAGGCACGGGAGAATCTCGATCCCTGGGCGCTCTACGGCTAC
CTGGGACTGGCCTTGCTGGAAGCCGGGCAGGGCGACCTGGACGCGGCGTTCAACCGCCTGCTGGAGGTCGAG
CGGCTGATGCAGCAGCGCCATGTCCCCGATCCGCTGTATCGCGGCGCGCTGCTGCTGGTCAGCTCCGCCCTG
ACCCTGCAGCAGGGAAGGCCGGCGCAGGCGCGGGAGATCCTGCTGCGGGTCCGCGCCTACTTCCAGCCGGGA
CGGGCGCGCCTGTCGCCGCCCTCTGAACCGGAGCTGGAAGCGCGGGTAGAGCACCAATTGGCACTGGCCGAA
CTCTACAGCGGCGAGGCAGCCGCCGCCGAAGCGCGGCTGCGCGGGCTGCTCGCCATTCTCGAGGCGCAGGGG
CGGCAGACGCTGCTCTGCGAAGTGCGCATGGGTATCGCCGAGTGCCAGTTCCTCTCCGGACAATTGCCCCAG
GCCCAGCAAACCCTGCGCAGCGGCCTGGAACTGGCGGAGCGGCTGGGCCTGCAACTGCCGCAGCGGCGACTG
CGGGATCGCCAGCCGCAACTGTTCGCCGCCCTGCCGGGGGAAGAAGAGGAGGGGCTCAGTCCGCTCAGTTGC
CGGGAACTGGCGGTGCTCGGCCTGATCGCCCAGGGCTGCTCCAACCAGGAGATCGGCGAGCAACTGTTCATT
TCCCTGCACACGGTGAAGACCCACGCCCGGCGGATCAACGGCAAGCTCGGGGTGGCCCGCCGGACCCAGGCG
GTGGCGCGGGCCAAGGCCCTCGGCCTGCTCGCCTGA

Translation:

MTEPTELPAALPRLPPQHLPRPRLHQPLLRGECRLRLLCAPAGSGKTVLLGECARRAPPGVQVVWLALGGEA
LDPVTFRRRLAGALGLAEDSDEAQLCRRLRNASALWLLLDDYPRHPDPALDACLDRLLSAASPRVGWWLASR
RRPQCNLARLLLEGELLEVDGGLLAFDTDEVAELLRLHGRSADATTAGALLERSGGWCAALRLRLLVGEETA
GPLLQEYLQHELLDELPPPLADAARALAWLPQVGPELFRRLFEELPHGLDDLLARGFPLLADANQRYSLPPA
IREAWREAPQRPQRDFHREACEWFAEHGETREAVDQALAADEPETAAGLLQKLTEEQLLHGHNIGMVLALRD
ELPAALLASTPRLVILNAWTLLYAGRLAEAEDCIGQLARFLPMPSASRQRVLLAQWQGLFGILLHCRGERGA
ADYLREALEQLPEDAWSQGLICRSALMQLAMIEGRMDQARLIGRDALRLAREHDSLIFEALIELERAQWLEQ
RGELLRAEGVLDRAQRYLEDLGQQGSPMLGRIALRRARLCLQQGREVEAGHWYRLGLEQARENLDPWALYGY
LGLALLEAGQGDLDAAFNRLLEVERLMQQRHVPDPLYRGALLLVSSALTLQQGRPAQAREILLRVRAYFQPG
RARLSPPSEPELEARVEHQLALAELYSGEAAAAEARLRGLLAILEAQGRQTLLCEVRMGIAECQFLSGQLPQ
AQQTLRSGLELAERLGLQLPQRRLRDRQPQLFAALPGEEEEGLSPLSCRELAVLGLIAQGCSNQEIGEQLFI
SLHTVKTHARRINGKLGVARRTQAVARAKALGLLA*

AnnotationID:176 GeneID:166

AnnotatorUID: diggins

Modification Date/Time: 2005-04-18 12:12:46

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: PA3420

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2909

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO54680.1| (AE016859) transcriptional regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 910

 Score =  426 bits (1095), Expect = e-118
 Identities = 336/901 (37%), Positives = 438/901 (48%), Gaps = 102/901 (11%)

>gb|AAN66392.1|AE016267_1 (AE016776) transcriptional regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 905

 Score =  372 bits (956), Expect = e-102
 Identities = 315/897 (35%), Positives = 422/897 (47%), Gaps = 97/897 (10%)

Structural Features:

COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]
CD-Length = 894 residues,  99.6% aligned
Score =  670 bits (1731), Expect = 0.0
Identities = 341/895 (38%), Positives = 421/895 (47%), Gaps = 73/895 (8%)

Genomic Context:

Comment:

ReferenceID:335

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17477

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32146

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 166_cdd.html

URL:

Homologs By Global Alignment

Gene ID:166

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

300 PA3420_tr translation of PA3420 827 99.27 99.27 0 4202.0

19209 gb|AAG06808.1|AE004763_3 (AE004763) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 827 99.27 99.27 0 4202.0

GC ORFID: `43168`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3420`	Glimmer Score:
Start: `3243980`	Stop: `3241497`
Length: `2484`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3420 translation of PA3420`	Homolog Bit Score `1623.0`
Other Homologs: `t_PA3420 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCGAGCCGACCGAGCTGCCCGCCGCCTTGCCGCGGCTGCCGCCGCAGCACCTGCCGCGGCCCCGTTTG CACCAGCCGCTGCTGCGCGGCGAATGCCGCCTGCGACTGCTCTGCGCGCCCGCCGGCAGCGGCAAGACCGTC CTCCTCGGAGAATGCGCGCGGCGGGCGCCGCCTGGCGTGCAGGTGGTCTGGCTGGCGTTGGGCGGGGAAGCG CTGGACCCCGTGACCTTCCGCCGCCGCCTGGCCGGCGCCCTCGGCTTGGCCGAGGACAGCGACGAAGCGCAG CTGTGCCGGCGGCTGCGTAACGCTTCCGCGCTGTGGCTGCTGCTCGACGATTACCCACGGCACCCCGACCCC GCCCTCGACGCCTGCCTCGATCGCCTGTTGAGCGCGGCCTCGCCACGGGTGGGCTGGTGGCTGGCGAGCCGG CGGCGGCCGCAGTGCAACCTGGCGCGGTTGCTGCTGGAAGGGGAGTTGCTGGAGGTCGACGGCGGCCTGCTG GCGTTCGATACCGACGAGGTCGCCGAACTGCTCCGCCTGCACGGGCGCAGCGCCGATGCCACTACGGCCGGG GCACTGCTGGAACGCAGCGGCGGTTGGTGCGCCGCGTTGCGCTTGCGCCTGCTGGTCGGCGAAGAGACGGCC GGACCGTTGTTGCAGGAATATCTCCAGCACGAGTTGCTCGACGAGCTGCCGCCGCCGCTGGCCGACGCCGCG CGTGCCCTGGCCTGGCTGCCGCAAGTCGGTCCGGAGCTGTTCCGCCGGCTGTTCGAGGAGCTGCCCCACGGG CTGGACGACCTGTTGGCGCGGGGCTTCCCCCTGCTGGCCGATGCGAACCAGCGCTACAGCCTGCCGCCGGCG ATCCGCGAGGCCTGGCGCGAAGCGCCGCAGCGCCCGCAGCGGGACTTCCACCGGGAAGCCTGCGAATGGTTC GCCGAACACGGCGAGACCCGCGAGGCGGTCGACCAGGCGCTGGCCGCCGACGAACCGGAAACCGCCGCCGGA TTGTTGCAGAAGCTCACCGAGGAGCAATTGCTGCACGGCCACAACATCGGCATGGTCCTGGCCCTGCGCGAC GAACTGCCGGCGGCGCTGCTGGCCAGCACGCCGCGCCTGGTGATCCTGAATGCCTGGACGCTGCTCTACGCC GGACGCCTGGCCGAAGCCGAGGACTGCATCGGCCAGTTGGCGCGCTTCCTGCCGATGCCCTCGGCGTCCCGC CAGCGGGTGCTGCTGGCGCAATGGCAGGGCTTGTTCGGGATCCTCCTGCACTGCCGCGGCGAGCGCGGCGCC GCCGACTACCTGCGCGAGGCGCTGGAGCAACTGCCGGAGGACGCCTGGTCGCAGGGACTGATCTGCCGCTCG GCGCTGATGCAACTGGCGATGATCGAGGGGCGGATGGACCAGGCGCGGTTGATCGGCCGCGATGCCTTGCGC CTGGCGCGCGAGCACGACAGCCTGATCTTCGAGGCGTTGATCGAACTGGAGCGGGCGCAGTGGCTGGAGCAG CGCGGCGAACTGCTGCGCGCGGAAGGCGTCCTCGATCGCGCCCAGCGCTACCTGGAGGACCTCGGCCAGCAG GGCAGCCCGATGCTCGGCCGGATCGCCCTGCGCCGCGCGCGCCTGTGCCTGCAGCAGGGCCGCGAGGTCGAG GCCGGGCACTGGTATCGGCTGGGGCTGGAGCAGGCACGGGAGAATCTCGATCCCTGGGCGCTCTACGGCTAC CTGGGACTGGCCTTGCTGGAAGCCGGGCAGGGCGACCTGGACGCGGCGTTCAACCGCCTGCTGGAGGTCGAG CGGCTGATGCAGCAGCGCCATGTCCCCGATCCGCTGTATCGCGGCGCGCTGCTGCTGGTCAGCTCCGCCCTG ACCCTGCAGCAGGGAAGGCCGGCGCAGGCGCGGGAGATCCTGCTGCGGGTCCGCGCCTACTTCCAGCCGGGA CGGGCGCGCCTGTCGCCGCCCTCTGAACCGGAGCTGGAAGCGCGGGTAGAGCACCAATTGGCACTGGCCGAA CTCTACAGCGGCGAGGCAGCCGCCGCCGAAGCGCGGCTGCGCGGGCTGCTCGCCATTCTCGAGGCGCAGGGG CGGCAGACGCTGCTCTGCGAAGTGCGCATGGGTATCGCCGAGTGCCAGTTCCTCTCCGGACAATTGCCCCAG GCCCAGCAAACCCTGCGCAGCGGCCTGGAACTGGCGGAGCGGCTGGGCCTGCAACTGCCGCAGCGGCGACTG CGGGATCGCCAGCCGCAACTGTTCGCCGCCCTGCCGGGGGAAGAAGAGGAGGGGCTCAGTCCGCTCAGTTGC CGGGAACTGGCGGTGCTCGGCCTGATCGCCCAGGGCTGCTCCAACCAGGAGATCGGCGAGCAACTGTTCATT TCCCTGCACACGGTGAAGACCCACGCCCGGCGGATCAACGGCAAGCTCGGGGTGGCCCGCCGGACCCAGGCG GTGGCGCGGGCCAAGGCCCTCGGCCTGCTCGCCTGA