ViewGene

Locus Name:
GeneID:
Location:

GeneID:1659
TrivialName: PA14_14830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14830
PAO1 Ortholog Locus:PA3806
Sequence Length:1140
Protein Length:379
Start: 1260046
Stop: 1261185
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07193.1|AE004798_16 (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 379/379 (100%), Positives = 379/379 (100%)
Sequence:
ATGACAACGACCACCGCCGGCAAGGTGAACCTGCTGGGCCTGACCCAGCCGCAGCTGGAACAGTTCTTCGAG
TCCATCGGCGAGAAGCGTTTCCGGGCCGGCCAGGTCATGAAGTGGATTCACCACTTTGGCGTCGACGATTTC
GACGCCATGACCAACGTCGGCAAGGCCTTGCGCGAAAAGCTCAAGGCCTCAGCCGAGATACGCGGTCCCGAG
ATCGTCAGCCAGGACATCTCCGCCGACGGCACCCGCAAGTGGGTGGTCCGGGTGGCGTCCGGCAGTTGCGTC
GAGACCGTGTACATCCCCCAGGGCGGACGCGGCACCCTGTGCGTGTCCTCCCAGGCGGGCTGCGCCCTGGAT
TGCAGTTTCTGCTCCACCGGCAAGCAGGGTTTCAACAGCGACCTCACCGCCGCCGAGGTGATCGGCCAGGTG
TGGATCGCCAACAAGTCGTTCGGTACCGTTCCGGCCAAGATCGACCGCGCCATCACCAATGTCGTGATGATG
GGCATGGGCGAGCCGCTGCTGAACTTCGACAACGTGGTCGCCGCCATGAACATCATGATGGACGACCTCGGC
TACGGTATTTCCAAGCGCAAGGTGACCCTGTCCACCTCCGGCGTGGTGCCGATGATCGACAAGCTCGGCGAG
GTGATCGACGTGTCCCTGGCCCTGTCGCTGCACGCACCGAACGACGAGTTGCGCAACAAGCTGGTGCCGATC
AACAAGAAGTATCCGCTGGGCATGCTGCTGGATGCCTGCCGCCGGTATATTTCCCGGCTCGGCGAGAAGCGC
GTGCTGACCGTCGAGTACACCCTGCTCAAGGATGTCAACGATCAGCCCGAGCATGCTGAGCAGATGATCGCA
TTGCTGAAAGACACGCCTTGCAAGATCAACCTGATTCCGTTTAATCCATTCCCGCACTCCGGCTACGAGCGC
CCGAGCAACAATGCCATCCGGCGTTTCCAGGACATGTTGCACAAGGGCGGCTTCAACGTGACCGTGCGTACC
ACCCGCGGCGACGACATCGACGCAGCCTGTGGCCAGCTGGTCGGCCAGGTCATGGATCGTACCCGCCGGAGC
GAACGTTATATTGCCGTGCGCCAACTGGCCGAGTCCGAGTCGGCGGCGAATCGAAATTGA
Translation:
MTTTTAGKVNLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKASAEIRGPE
IVSQDISADGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSDLTAAEVIGQV
WIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVVAAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGE
VIDVSLALSLHAPNDELRNKLVPINKKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIA
LLKDTPCKINLIPFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQLVGQVMDRTRRS
ERYIAVRQLAESESAANRN*
AnnotationID:1668GeneID:1659
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 11:11:51
Gene Name:
Confidence Code:3
GeneProduct:putative Fe-S-cluster redox enzyme
Cell Localization:()
Synonyms:PA3806
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0820
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54952.1| (AE016860) radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 382

 Score =  652 bits (1683), Expect = 0.0
 Identities = 315/372 (84%), Positives = 350/372 (94%)

>gb|AAL21419.1| (AE008814) putative Fe-S-cluster redox enzyme [Salmonella
           typhimurium LT2]
          Length = 388

 Score =  425 bits (1092), Expect = e-118
 Identities = 214/357 (59%), Positives = 264/357 (73%), Gaps = 4/357 (1%)

Structural Features:
COG0820, Predicted Fe-S-cluster redox enzyme
CD-Length = 349 residues, 100.0% aligned
Score =  476 bits (1226), Expect = 5e-135
Identities = 192/354 (54%), Positives = 248/354 (70%), Gaps = 7/354 (1%)
Genomic Context:
Comment:
ReferenceID:3321
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20468
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31750
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1659_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1659

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2927 PA3806_tr translation of PA3806 379 99.99 99.99 0 1955.0
91276 gb|AAG07193.1|AE004798_16 (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 379 99.99 99.99 0 1955.0
91277 gb|AAB40948.1| (L49434) homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas aeruginosa] 379 99.99 99.99 0 1955.0
91278 gb|AAN66475.1|AE016276_10 (AE016777) conserved hypothetical protein TIGR00048 [Pseudomonas putida KT2440] 383 85.37 91.90 6 1697.0
91279 gb|AAO54952.1| (AE016860) radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato str. DC3000] 383 83.28 92.95 5 1682.0
GC ORFID: 44661How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3806Glimmer Score:
Start: 3693892Stop: 3692753
Length: 1140
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3806 translation of PA3806Homolog Bit Score 757.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4525 (ORF: BLASTX 657.0), t_PA3806 (ORF: GLIMMER)
GC ORF Sequence
ATGACAACGACCACCGCCGGCAAGGTGAACCTGCTGGGCCTGACCCAGCCGCAGCTGGAACAGTTCTTCGAG
TCCATCGGCGAGAAGCGTTTCCGGGCCGGCCAGGTCATGAAGTGGATTCACCACTTTGGCGTCGACGATTTC
GACGCCATGACCAACGTCGGCAAGGCCTTGCGCGAAAAGCTCAAGGCCTCAGCCGAGATACGCGGTCCCGAG
ATCGTCAGCCAGGACATCTCCGCCGACGGCACCCGCAAGTGGGTGGTCCGGGTGGCGTCCGGCAGTTGCGTC
GAGACCGTGTACATCCCCCAGGGCGGACGCGGCACCCTGTGCGTGTCCTCCCAGGCGGGCTGCGCCCTGGAT
TGCAGTTTCTGCTCCACCGGCAAGCAGGGTTTCAACAGCGACCTCACCGCCGCCGAGGTGATCGGCCAGGTG
TGGATCGCCAACAAGTCGTTCGGTACCGTTCCGGCCAAGATCGACCGCGCCATCACCAATGTCGTGATGATG
GGCATGGGCGAGCCGCTGCTGAACTTCGACAACGTGGTCGCCGCCATGAACATCATGATGGACGACCTCGGC
TACGGTATTTCCAAGCGCAAGGTGACCCTGTCCACCTCCGGCGTGGTGCCGATGATCGACAAGCTCGGCGAG
GTGATCGACGTGTCCCTGGCCCTGTCGCTGCACGCACCGAACGACGAGTTGCGCAACAAGCTGGTGCCGATC
AACAAGAAGTATCCGCTGGGCATGCTGCTGGATGCCTGCCGCCGGTATATTTCCCGGCTCGGCGAGAAGCGC
GTGCTGACCGTCGAGTACACCCTGCTCAAGGATGTCAACGATCAGCCCGAGCATGCTGAGCAGATGATCGCA
TTGCTGAAAGACACGCCTTGCAAGATCAACCTGATTCCGTTTAATCCATTCCCGCACTCCGGCTACGAGCGC
CCGAGCAACAATGCCATCCGGCGTTTCCAGGACATGTTGCACAAGGGCGGCTTCAACGTGACCGTGCGTACC
ACCCGCGGCGACGACATCGACGCAGCCTGTGGCCAGCTGGTCGGCCAGGTCATGGATCGTACCCGCCGGAGC
GAACGTTATATTGCCGTGCGCCAACTGGCCGAGTCCGAGTCGGCGGCGAATCGAAATTGA