ViewGene
Locus Name:
GeneID:
Location:

GeneID:1658
TrivialName: PA14_50050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50050
PAO1 Ortholog Locus:PA1108
Sequence Length:1158
Protein Length:385
Start: 4448711
Stop: 4449868
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04497.1|AE004541_2 (AE004541) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 379/385 (98%), Positives = 382/385 (99%)
Sequence:
ATGCCTGACCGTCCTCGCCCTCCCCTGCTGCTGGTGCTCGCCCTGCTAGCCCTGCCGCAAGTCGCCGAAACC
ATCCTTTCCCCCGCGCTGCCGGCCCTGGCCAGCCACTGGCGACTGGACGACGCTACCAGCCAGTGGACCATG
GCGCTGTTCTTCGTCGGTTTCGCCCCCGGCATCTGGCTCTGGGGCTGGCTGGCCGACCGCCTCGGCCGGCGC
CCGGCTCTGCTCGGCGGGCTCGGCCTGGCGGCCCTGGCGACCTTCGGTGCCTGGGCCAGTACCGACTATTCC
TACCTGCTTGCCTGTCGCCTGGTCCAGGGCCTCGGCCTGGCGACCTGCTCGGTGACGGTGCAGGCCAGCCTG
CGCGATGTGCTGCAAGGCCCGGCGTTGATGAGCTATTTCGTCACGCTCGGCGCGGTGCTGGCCTGGTCGCCG
GCAGTCGGCCCCCTCGGCGGCCAGTGGCTGGCCGACCTCGGCGGGCACCCGGCGGTGTTCGCCACCCTGGCG
GTGCTGCTCGCCTCGCTGGCGGCGCTGGTCGTCCCGGCCTGGCCGGAAACCCGTCCGCTGCTGGCGGGCACG
CCCGAGCCCGCGACCCTGGCGATCTTCCGACGGGTCCTGGCCGACCGACCGCTACAGACGCGCGCACTGCTG
GTGGCGGTGCTCAATGTACTGGTGTTCTCCTTCTACGCCGCCGGGCCGTTCATGGTCGGCGACCTGCCCGGC
CTGGGCTTCGGCTGGATCGGCCTGGCCATCGCCCTTGCCGGGAGCCTCGGCGCCTTGCTCAACCGACGCCTG
CCGCACACCTGGAACAGCGCTCGCCGGGTACGCCTGGGCCTGGCGCTGGCAGCCGCCGGCGCGACAGCGCAG
ACGCTGTTGGCCGCCGGCGGATACGCCGAAGGCCTGTCCTGGGCCCTGCCGGCCCTGCCGATCTTCGTAGGC
TTCGGCGTGGCGATTCCCAACCTGCTGGGTCCGGCGCTGTACGCCTACGACGATTGCCGGGGACGCGCCGGA
GCCCTGTTCGGGCTCGCCTACTACCTGCTGATCGGCCTCGGACTGGGCGCGTCCACCCTGCTACCGTTCGAC
CGTCCCTGGCCGCTGGCGGCGTACTGGAGCCTGCTGGGCCTGGTCGCACTGCTGCTGGCCAGGCGGCTGCCG
GAATGA
Translation:
MPDRPRPPLLLVLALLALPQVAETILSPALPALASHWRLDDATSQWTMALFFVGFAPGIWLWGWLADRLGRR
PALLGGLGLAALATFGAWASTDYSYLLACRLVQGLGLATCSVTVQASLRDVLQGPALMSYFVTLGAVLAWSP
AVGPLGGQWLADLGGHPAVFATLAVLLASLAALVVPAWPETRPLLAGTPEPATLAIFRRVLADRPLQTRALL
VAVLNVLVFSFYAAGPFMVGDLPGLGFGWIGLAIALAGSLGALLNRRLPHTWNSARRVRLGLALAAAGATAQ
TLLAAGGYAEGLSWALPALPIFVGFGVAIPNLLGPALYAYDDCRGRAGALFGLAYYLLIGLGLGASTLLPFD
RPWPLAAYWSLLGLVALLLARRLPE*
AnnotationID:1667GeneID:1658
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 13:01:32
Gene Name:
Confidence Code:3
GeneProduct:probable MFS transporter
Cell Localization:()
Synonyms:PA1108
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
             CD-Length = 394 residues,  88.3% aligned
             Score = 46.0 bits (109), Expect = 7e-06






   
Genomic Context:






   
Comment:


















    ReferenceID:3319




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20466




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1658
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2926
                           PA1108_tr
                           translation of PA1108
                           385
                           98.44
                           99.22
                           0
                           1955.0
     

     
     
91274
                           gb|AAG04497.1|AE004541_2
                           (AE004541) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           385
                           98.44
                           99.22
                           0
                           1955.0
     

     
     
91275
                           gb|AAQ59185.1|
                           (AE016915) probable multidrug resistance protein [Chromobacterium violaceum ATCC 12472]
                           395
                           41.01
                           53.67
                           31
                           650.0
     

     






      

          
GC ORFID: 44660How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1108Glimmer Score: 

          
Start: 505197Stop: 504040

          
Length: 1158


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1108 translation of PA1108Homolog Bit Score 757.0

          
Other Homologs:  t_PA1108 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACCGTCCTCGCCCTCCCCTGCTGCTGGTGCTCGCCCTGCTAGCCCTGCCGCAAGTCGCCGAAACC 
ATCCTTTCCCCCGCGCTGCCGGCCCTGGCCAGCCACTGGCGACTGGACGACGCTACCAGCCAGTGGACCATG 
GCGCTGTTCTTCGTCGGTTTCGCCCCCGGCATCTGGCTCTGGGGCTGGCTGGCCGACCGCCTCGGCCGGCGC 
CCGGCTCTGCTCGGCGGGCTCGGCCTGGCGGCCCTGGCGACCTTCGGTGCCTGGGCCAGTACCGACTATTCC 
TACCTGCTTGCCTGTCGCCTGGTCCAGGGCCTCGGCCTGGCGACCTGCTCGGTGACGGTGCAGGCCAGCCTG 
CGCGATGTGCTGCAAGGCCCGGCGTTGATGAGCTATTTCGTCACGCTCGGCGCGGTGCTGGCCTGGTCGCCG 
GCAGTCGGCCCCCTCGGCGGCCAGTGGCTGGCCGACCTCGGCGGGCACCCGGCGGTGTTCGCCACCCTGGCG 
GTGCTGCTCGCCTCGCTGGCGGCGCTGGTCGTCCCGGCCTGGCCGGAAACCCGTCCGCTGCTGGCGGGCACG 
CCCGAGCCCGCGACCCTGGCGATCTTCCGACGGGTCCTGGCCGACCGACCGCTACAGACGCGCGCACTGCTG 
GTGGCGGTGCTCAATGTACTGGTGTTCTCCTTCTACGCCGCCGGGCCGTTCATGGTCGGCGACCTGCCCGGC 
CTGGGCTTCGGCTGGATCGGCCTGGCCATCGCCCTTGCCGGGAGCCTCGGCGCCTTGCTCAACCGACGCCTG 
CCGCACACCTGGAACAGCGCTCGCCGGGTACGCCTGGGCCTGGCGCTGGCAGCCGCCGGCGCGACAGCGCAG 
ACGCTGTTGGCCGCCGGCGGATACGCCGAAGGCCTGTCCTGGGCCCTGCCGGCCCTGCCGATCTTCGTAGGC 
TTCGGCGTGGCGATTCCCAACCTGCTGGGTCCGGCGCTGTACGCCTACGACGATTGCCGGGGACGCGCCGGA 
GCCCTGTTCGGGCTCGCCTACTACCTGCTGATCGGCCTCGGACTGGGCGCGTCCACCCTGCTACCGTTCGAC 
CGTCCCTGGCCGCTGGCGGCGTACTGGAGCCTGCTGGGCCTGGTCGCACTGCTGCTGGCCAGGCGGCTGCCG 
GAATGA