ViewGene
Locus Name:
GeneID:
Location:

GeneID:1657
TrivialName: PA14_59240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59240
PAO1 Ortholog Locus:
Sequence Length:1125
Protein Length:374
Start: 5277443
Stop: 5278567
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84211.1| (AY273869) PilL2 [Pseudomonas aeruginosa]
Identities = 374/374 (100%), Positives = 374/374 (100%)
Sequence:
ATGACCAGGCAGTTGACCACTCTCACGCTGTGCCTGCTGCTCGCCAGCTGCACGACCCACAAGGCTGAGCCG
GCCAGGCCAGCCTTCGACAGCAGCCGCAATCCAGACCTGCTTTCTCCGGACCTGTATCCAAACGGTGTGCAG
CCGGAGAAAGAGCCCGTAGTGCGCTATGGGCGCTACACCCTGGTCAGCACCCAGCCTGATGCCGGTCAACGC
GACCTGATGGCCCAGATCATCGACGTAACCATCCCGTCGAGCATGAACCCGAGCGTCAAGGACGCCATGCAG
TACGTGATGAGCCGCTCGGGTTACTCGCTGTGCCCGGCAGACGCCGGTCATGTGAACATCCTCTACACCCGG
CCGCTGCCGGCAGCTCAGTACAAGCTCGGCCCGATGACCCTGCGCAACACCCTCCAGGTCCTCTCCGGCCCA
GCCTGGCAGGTTAAGGTCGACGAGGTCGCGCGGCAGGTCTGCTTCGTGCTGCGCCCGGGCTATCAACTTCCC
CCGGCGCCGAGGCCGAAACCGGTCCAGCAACTGTATGCGAAGCCCGCTGCCCCAACTCCGCCGGCGGTAGCG
CAACCCTCCTCCACGGAGAAAGTCAGCACGCTGGAGTCGCCCATCGTGGTCGCCTCGGTGCCGACACCGGCG
CCGATCACAACCAGCCACGCTCCGGCCAAGAAGCCTGAATCCACCACTGTGCTCCCCCCAGCCGCACCGGCC
AAGGATGGCCACCCCTCTTCTCCTCCCGCGGCTTCGGCACCGACCAAGCCTGCGGCCTCCGCCGTGAAGTCC
ACGCCGCCCACTCCACCCACCGTGGCTTCCGCCCCACCGGTCAAGGTGCTCACGCCGCCGGAACCGAGCCGG
CCGCTGGCACAGGCCTGGTCAGCCGAGACGGGATCAACCCTGCGCGACACCTTGGAAGCTTGGGCAAAGCGC
GCACGCTGGACCGTCCGCTGGGAGCCGCAGGATCTCAACTATCCGATCGAGGCTCCACTGACCTTCCACGGC
TCCTTCGAGGACGCGGTATCCGAGCTGTTCCCCCTGTATGACGCTGCCGAACGGCCCTTCCTGGTGAACGCC
AGCCGCCCGCAGTCCCTGATCATCATCAAGGAGCGCAAGAACTGA
Translation:
MTRQLTTLTLCLLLASCTTHKAEPARPAFDSSRNPDLLSPDLYPNGVQPEKEPVVRYGRYTLVSTQPDAGQR
DLMAQIIDVTIPSSMNPSVKDAMQYVMSRSGYSLCPADAGHVNILYTRPLPAAQYKLGPMTLRNTLQVLSGP
AWQVKVDEVARQVCFVLRPGYQLPPAPRPKPVQQLYAKPAAPTPPAVAQPSSTEKVSTLESPIVVASVPTPA
PITTSHAPAKKPESTTVLPPAAPAKDGHPSSPPAASAPTKPAASAVKSTPPTPPTVASAPPVKVLTPPEPSR
PLAQAWSAETGSTLRDTLEAWAKRARWTVRWEPQDLNYPIEAPLTFHGSFEDAVSELFPLYDAAERPFLVNA
SRPQSLIIIKERKN*
AnnotationID:1666GeneID:1657
AnnotatorUID: diggins
Modification Date/Time: 2006-01-31 06:06:51
Gene Name:pilL2
Confidence Code:3
GeneProduct:type IV B pilus protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL05416.1| (AY047316) PilL [Yersinia pseudotuberculosis]
          Length = 356

 Score =  205 bits (522), Expect = 3e-52
 Identities = 138/375 (36%), Positives = 195/375 (52%), Gaps = 41/375 (10%)

>emb|CAD09317.1| (AL627282) putative exported protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 414

 Score =  194 bits (494), Expect = 6e-49
 Identities = 147/425 (34%), Positives = 204/425 (48%), Gaps = 72/425 (16%)

>gb|AAL05516.1|AF399919_3 (AF399919) PilL [Escherichia coli]
          Length = 357

 Score = 80.9 bits (198), Expect = 1e-14
 Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 30/187 (16%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold






   
Genomic Context:






   
Comment:


















    ReferenceID:3317




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20464




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38298




  
Author/Investigator(s):
        Sakai D, Komano T.





  
Title:
        Genes required for plasmid R64 thin-pilus biogenesis: identification and localization of products of the pilK, pilM, pilO, pilP, pilR, and pilT genes.




  
PubMed:
        11751821


MedLine:
        




    
Source:
J Bacteriol. 2002 Jan;184(2):444-51.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=11751821









           
Homologs By Global Alignment 

           

       



     
Gene ID:1657
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
91269
                           gb|AAP84211.1|
                           (AY273869) PilL2 [Pseudomonas aeruginosa]
                           374
                           99.99
                           99.99
                           0
                           1956.0
     

     
     
91270
                           emb|CAE92927.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           397
                           21.41
                           27.70
                           214
                           347.0
     

     
     
91272
                           gb|AAN62164.1|AF440523_71
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           395
                           20.75
                           27.08
                           217
                           315.0
     

     
     
91271
                           gb|AAM37106.1|
                           (AE011862) PilL protein [Xanthomonas axonopodis pv. citri str. 306]
                           407
                           20.63
                           25.79
                           240
                           327.0
     

     
     
91273
                           gb|AAN62295.1|AF440524_82
                           (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa]
                           378
                           19.57
                           27.51
                           207
                           297.0
     

     






      

          
GC ORFID: 44659How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL086Glimmer Score: 

          
Start: 4541122Stop: 4542246

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL086 pilL 374 Homolog: STY4539 / Type IVB pilus biosynthesis; Pathogenicity-related / S.enterica subsp enterica serovar Typhi / CT18 (CAD09317) translation of RL086Homolog Bit Score 758.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1585 (ORF: BLASTX 378.0), t_RL086 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGGCAGTTGACCACTCTCACGCTGTGCCTGCTGCTCGCCAGCTGCACGACCCACAAGGCTGAGCCG 
GCCAGGCCAGCCTTCGACAGCAGCCGCAATCCAGACCTGCTTTCTCCGGACCTGTATCCAAACGGTGTGCAG 
CCGGAGAAAGAGCCCGTAGTGCGCTATGGGCGCTACACCCTGGTCAGCACCCAGCCTGATGCCGGTCAACGC 
GACCTGATGGCCCAGATCATCGACGTAACCATCCCGTCGAGCATGAACCCGAGCGTCAAGGACGCCATGCAG 
TACGTGATGAGCCGCTCGGGTTACTCGCTGTGCCCGGCAGACGCCGGTCATGTGAACATCCTCTACACCCGG 
CCGCTGCCGGCAGCTCAGTACAAGCTCGGCCCGATGACCCTGCGCAACACCCTCCAGGTCCTCTCCGGCCCA 
GCCTGGCAGGTTAAGGTCGACGAGGTCGCGCGGCAGGTCTGCTTCGTGCTGCGCCCGGGCTATCAACTTCCC 
CCGGCGCCGAGGCCGAAACCGGTCCAGCAACTGTATGCGAAGCCCGCTGCCCCAACTCCGCCGGCGGTAGCG 
CAACCCTCCTCCACGGAGAAAGTCAGCACGCTGGAGTCGCCCATCGTGGTCGCCTCGGTGCCGACACCGGCG 
CCGATCACAACCAGCCACGCTCCGGCCAAGAAGCCTGAATCCACCACTGTGCTCCCCCCAGCCGCACCGGCC 
AAGGATGGCCACCCCTCTTCTCCTCCCGCGGCTTCGGCACCGACCAAGCCTGCGGCCTCCGCCGTGAAGTCC 
ACGCCGCCCACTCCACCCACCGTGGCTTCCGCCCCACCGGTCAAGGTGCTCACGCCGCCGGAACCGAGCCGG 
CCGCTGGCACAGGCCTGGTCAGCCGAGACGGGATCAACCCTGCGCGACACCTTGGAAGCTTGGGCAAAGCGC 
GCACGCTGGACCGTCCGCTGGGAGCCGCAGGATCTCAACTATCCGATCGAGGCTCCACTGACCTTCCACGGC 
TCCTTCGAGGACGCGGTATCCGAGCTGTTCCCCCTGTATGACGCTGCCGAACGGCCCTTCCTGGTGAACGCC 
AGCCGCCCGCAGTCCCTGATCATCATCAAGGAGCGCAAGAACTGA