ViewGene

Locus Name:
GeneID:
Location:

GeneID:1656
TrivialName: PA14_00850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00850
PAO1 Ortholog Locus:PA0072
Sequence Length:1200
Protein Length:399
Start: 83929
Stop: 82730
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03462.1|AE004446_10 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/399 (99%), Positives = 398/399 (99%)
Sequence:
ATGCGCGCCGGCCTGCTGCTCTCGCTGGCCTGGGCCGACTATCGCGGCGAGGCGCGCCTGTCGCTCTGCGCG
ATCTTCGCCCTGGCGGCGGTGATCACCCCGCTGCTGGTGCTGTTCGGCCTCAAGTACGGCCTGGTCAGCACC
CTCACCGAGCGGCTGGAGCGCGCGCCTTCGGTGCGCGAGATCATTCCGGTCGGCGGCGCCCGCTACCGTGCC
GAGGACATCGCCGCCCTGGCCGCACGCGCGGATGTCGCCTTCGCCGTGCCGCGCACCCGGCAGATCGCCGCC
ACCGCCGACCTCAGCGGCGGCGGCGAGACCGCCCTGAGCGTCGAGATGATTCCCAGCGCCGCCGGCGACCCG
CTGCTGGCCGGCCTGCCGCAACCCGACCGGCCGACCCGCGTGGTGCTCAGCCACGGCGCCGCGGAAAAACTC
GGCGCCCAGCCTGGCGAGCGCATCGTCGCGCGCATCGGCCGGCGCATGGATGGCCAGGCACAGAGCCAGCGC
CTGGAGCTGGAAGTGCTCGCGGTGCTGCCGCAGGAGCGTTTCGCCCGCGACGCGCTGTTCGCCCCGCTAGCC
CTGCTGGAAGCCGCCGAGGACTATCGCGACGGTCGCGCGGTGGCCGCCTACGGCTGGCCGGGGAAGGCCGGC
GAGACCCCGCGCGCACGCATCTACCCGGGCTTCCGCCTGTACGCCCGAGACCTCGATGCGGTGGAAGGGCTG
CGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCGCAGCCTC
AGCCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCGGCCATCGCC
GCCAGCAGCCTGGCCGCCGTCGAACGCAAGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTTCCCGACC
GCCGCGCTGGTCGGCTTCGTCATGTTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCTGTTCCTCGCCGGGCTG
CTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTGCCGCCTG
CTGCCCAGCCACTACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAGCGGCGGC
TGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCGATGTTTGA
Translation:
MRAGLLLSLAWADYRGEARLSLCAIFALAAVITPLLVLFGLKYGLVSTLTERLERAPSVREIIPVGGARYRA
EDIAALAARADVAFAVPRTRQIAATADLSGGGETALSVEMIPSAAGDPLLAGLPQPDRPTRVVLSHGAAEKL
GAQPGERIVARIGRRMDGQAQSQRLELEVLAVLPQERFARDALFAPLALLEAAEDYRDGRAVAAYGWPGKAG
ETPRARIYPGFRLYARDLDAVEGLRRHFVASGVEVATQAEAIAQVRSLSRNLGLVFWIVAALAIGGAFAAIA
ASSLAAVERKRRALAVLRLLGFPTAALVGFVMFLALFSAVFGLFLAGLLYAATAGALNHLFDNQSGEFVCRL
LPSHYLTALLATLLCSVLAAASGGWRAARIEAAEGLRDV*
AnnotationID:1665GeneID:1656
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:32
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA0072
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02687
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam02687, FtsX, Predicted permease. 
CD-Length = 172 residues, 100.0% aligned
Score = 66.9 bits (163), Expect = 4e-12
Genomic Context:
Comment:
ReferenceID:3315
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20462
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33426
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1656_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1656

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2925 PA0072_tr translation of PA0072 399 99.74 99.74 0 1956.0
91268 gb|AAG03462.1|AE004446_10 (AE004446) hypothetical protein PA0072 [Pseudomonas aeruginosa PAO1] 399 99.74 99.74 0 1956.0
GC ORFID: 44658How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0072Glimmer Score:
Start: 5885266Stop: 5884067
Length: 1200
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0072 translation of PA0072Homolog Bit Score 758.0
Other Homologs: t_PA0072 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCGCCGGCCTGCTGCTCTCGCTGGCCTGGGCCGACTATCGCGGCGAGGCGCGCCTGTCGCTCTGCGCG
ATCTTCGCCCTGGCGGCGGTGATCACCCCGCTGCTGGTGCTGTTCGGCCTCAAGTACGGCCTGGTCAGCACC
CTCACCGAGCGGCTGGAGCGCGCGCCTTCGGTGCGCGAGATCATTCCGGTCGGCGGCGCCCGCTACCGTGCC
GAGGACATCGCCGCCCTGGCCGCACGCGCGGATGTCGCCTTCGCCGTGCCGCGCACCCGGCAGATCGCCGCC
ACCGCCGACCTCAGCGGCGGCGGCGAGACCGCCCTGAGCGTCGAGATGATTCCCAGCGCCGCCGGCGACCCG
CTGCTGGCCGGCCTGCCGCAACCCGACCGGCCGACCCGCGTGGTGCTCAGCCACGGCGCCGCGGAAAAACTC
GGCGCCCAGCCTGGCGAGCGCATCGTCGCGCGCATCGGCCGGCGCATGGATGGCCAGGCACAGAGCCAGCGC
CTGGAGCTGGAAGTGCTCGCGGTGCTGCCGCAGGAGCGTTTCGCCCGCGACGCGCTGTTCGCCCCGCTAGCC
CTGCTGGAAGCCGCCGAGGACTATCGCGACGGTCGCGCGGTGGCCGCCTACGGCTGGCCGGGGAAGGCCGGC
GAGACCCCGCGCGCACGCATCTACCCGGGCTTCCGCCTGTACGCCCGAGACCTCGATGCGGTGGAAGGGCTG
CGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCGCAGCCTC
AGCCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCGGCCATCGCC
GCCAGCAGCCTGGCCGCCGTCGAACGCAAGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTTCCCGACC
GCCGCGCTGGTCGGCTTCGTCATGTTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCTGTTCCTCGCCGGGCTG
CTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTGCCGCCTG
CTGCCCAGCCACTACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAGCGGCGGC
TGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCGATGTTTGA