ViewGene
Locus Name:
GeneID:
Location:

GeneID:1655
TrivialName: PA14_60780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60780
PAO1 Ortholog Locus:PA4593
Sequence Length:1194
Protein Length:397
Start: 5418189
Stop: 5416996
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07981.1|AE004873_3 (AE004873) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 396/397 (99%), Positives = 397/397 (100%)
Sequence:
GTGAGCGCCAGCCCGTCGCCCCGGCAATTGCTTCACGAGGCCCTCGCCAGTCTTCGCGGGCTGGGGCGCCGC
TCGCTGCTGGCGTTGCTGGGTATCGTCATGGGCTGTTCATCGGTGATCGCGATGCTGAACATCGGCAGCAAC
GCGACCGACGAAGCGATGAGCATCTTCAAGGACATGGGCACCGACACCCTGGTGGTGCAGTTCCCGTTCGCC
CCGCAGGCGCCGATGCCGATGCCGGCGTCGCTCGACACCGAACCGCTGCTCCGCGACGTGGCCGGTCTGGAG
CACCTGGCGGCGCTGGGCCTGTACTCGGCCCCGGTGACCTTTCACGGACGCACCAGCAACGCCAGTATCGTC
GGCGCCAGCGCCGGGCTCGCAGCCGCCGCCAGGCTACGGCTGCGCGAAGGACGTTTCCTCTCGCACTTCGAC
GATCACGACACCTACGTGGTGGTGGGCGCGACAATCGCCGAGGCCCTGGGGGCGCCCGGCGATCCGCTGCGC
CTCGGCGAGCAACTGACGGTCAACGACTATCTGTTTCGCGTGATCGGCATTCTCCAGCCGCAGGCCAGCGCC
GCTCTCTTGCCGTTCGCCGCCAACGACTCGCTGTTCGTGCCGGCGCCGGGCATGCCGCGCCTGCAGCCGGCC
GCCGAGGTCAGCCATGTGGTGGCGCGGGTCTCGCCGGGAGCGGACGTCTATAGCGTCGGCGCGGCCCTGGGC
GCGGCCCTGACGGCGCGGTTGCCCGGCCACGAGGCGCAGGTCCAGGTCTCGCAGCAGGTGCTCGATGGACTC
AAGCGGCAGACCCGGACCTTCACTTACCTGCTGGCCGGACTGGGGATCATCTCCCTGCTCGGCGGCGGCGTC
GGAGTGATGAACGTGATGCTGATGAGTGTCGCCGAACGCCGCCGGGAAATCGGCGTGCGCATGGCGCTGGGC
GCGCGCCAGCGGGACATCCGCAACCTGTTCCTGATCGAGGCGGTGACCCTGACCGCCGCGGGCGCGCTGTCG
GGCGCGGTGCTCGGCGTGGCGGCTGCGTATCTCTACGCCAGGTTCTCCGGCTGGACCTTCTCCCTGGCCTAC
GCGGCCCTGCCGCTGGGGATGGGCAGTACCCTGCTGGTGGGGCTGTTCTTCGGGCTCTATCCGGCGGTCTCG
GCGGCTCGCCTGCAACCGGTCGAGGCGCTGCGCGATGAATAG
Translation:
MSASPSPRQLLHEALASLRGLGRRSLLALLGIVMGCSSVIAMLNIGSNATDEAMSIFKDMGTDTLVVQFPFA
PQAPMPMPASLDTEPLLRDVAGLEHLAALGLYSAPVTFHGRTSNASIVGASAGLAAAARLRLREGRFLSHFD
DHDTYVVVGATIAEALGAPGDPLRLGEQLTVNDYLFRVIGILQPQASAALLPFAANDSLFVPAPGMPRLQPA
AEVSHVVARVSPGADVYSVGAALGAALTARLPGHEAQVQVSQQVLDGLKRQTRTFTYLLAGLGIISLLGGGV
GVMNVMLMSVAERRREIGVRMALGARQRDIRNLFLIEAVTLTAAGALSGAVLGVAAAYLYARFSGWTFSLAY
AALPLGMGSTLLVGLFFGLYPAVSAARLQPVEALRDE*
AnnotationID:1664GeneID:1655
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:36
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter
Cell Localization:()
Synonyms:PA4593
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0577,pfam02687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO91301.1| (AE016965) ABC transporter, permease protein [Coxiella burnetii RSA
           493]
          Length = 404

 Score =  223 bits (569), Expect = 1e-57
 Identities = 130/390 (33%), Positives = 222/390 (56%), Gaps = 8/390 (2%)

>dbj|BAC08935.1| (AP005373) ABC transporter permease protein [Thermosynechococcus
           elongatus BP-1]
          Length = 405

 Score =  177 bits (450), Expect = 8e-44
 Identities = 133/407 (32%), Positives = 209/407 (51%), Gaps = 38/407 (9%)

>gb|AAM23554.1| (AE012998) ABC-type transport systems, involved in lipoprotein
           release, permease components [Thermoanaerobacter
           tengcongensis]
          Length = 391

 Score =  170 bits (430), Expect = 2e-41
 Identities = 125/396 (31%), Positives = 201/396 (50%), Gaps = 16/396 (4%)








 
Structural Features:
COG0577, SalY, ABC-type antimicrobial peptide transport system, 
permease component [Defense mechanisms]
CD-Length = 419 residues,  99.8% aligned
Score =  139 bits (350), Expect = 1e-33
Identities = 123/418 (29%), Positives = 184/418 (44%), Gaps = 43/418 (10%)

pfam02687, FtsX, Predicted permease
CD-Length = 172 residues, 100.0% aligned
Score =  100 bits (251), Expect = 5e-22
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 12/178 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20460




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31628




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1655_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1655
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2924
                           PA4593_tr
                           translation of PA4593
                           397
                           99.74
                           99.99
                           0
                           1956.0
     

     
     
91266
                           gb|AAG07981.1|AE004873_3
                           (AE004873) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           397
                           99.49
                           99.99
                           0
                           1953.0
     

     
     
91267
                           emb|CAE15021.1|
                           (BX571867) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           404
                           51.98
                           68.31
                           10
                           998.0
     

     






      

          
GC ORFID: 44657How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4593Glimmer Score: 

          
Start: 4681869Stop: 4680676

          
Length: 1194


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4593 translation of PA4593Homolog Bit Score 758.0

          
Other Homologs:  t_PA4593 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGCCAGCCCGTCGCCCCGGCAATTGCTTCACGAGGCCCTCGCCAGTCTTCGCGGGCTGGGGCGCCGC 
TCGCTGCTGGCGTTGCTGGGTATCGTCATGGGCTGTTCATCGGTGATCGCGATGCTGAACATCGGCAGCAAC 
GCGACCGACGAAGCGATGAGCATCTTCAAGGACATGGGCACCGACACCCTGGTGGTGCAGTTCCCGTTCGCC 
CCGCAGGCGCCGATGCCGATGCCGGCGTCGCTCGACACCGAACCGCTGCTCCGCGACGTGGCCGGTCTGGAG 
CACCTGGCGGCGCTGGGCCTGTACTCGGCCCCGGTGACCTTTCACGGACGCACCAGCAACGCCAGTATCGTC 
GGCGCCAGCGCCGGGCTCGCAGCCGCCGCCAGGCTACGGCTGCGCGAAGGACGTTTCCTCTCGCACTTCGAC 
GATCACGACACCTACGTGGTGGTGGGCGCGACAATCGCCGAGGCCCTGGGGGCGCCCGGCGATCCGCTGCGC 
CTCGGCGAGCAACTGACGGTCAACGACTATCTGTTTCGCGTGATCGGCATTCTCCAGCCGCAGGCCAGCGCC 
GCTCTCTTGCCGTTCGCCGCCAACGACTCGCTGTTCGTGCCGGCGCCGGGCATGCCGCGCCTGCAGCCGGCC 
GCCGAGGTCAGCCATGTGGTGGCGCGGGTCTCGCCGGGAGCGGACGTCTATAGCGTCGGCGCGGCCCTGGGC 
GCGGCCCTGACGGCGCGGTTGCCCGGCCACGAGGCGCAGGTCCAGGTCTCGCAGCAGGTGCTCGATGGACTC 
AAGCGGCAGACCCGGACCTTCACTTACCTGCTGGCCGGACTGGGGATCATCTCCCTGCTCGGCGGCGGCGTC 
GGAGTGATGAACGTGATGCTGATGAGTGTCGCCGAACGCCGCCGGGAAATCGGCGTGCGCATGGCGCTGGGC 
GCGCGCCAGCGGGACATCCGCAACCTGTTCCTGATCGAGGCGGTGACCCTGACCGCCGCGGGCGCGCTGTCG 
GGCGCGGTGCTCGGCGTGGCGGCTGCGTATCTCTACGCCAGGTTCTCCGGCTGGACCTTCTCCCTGGCCTAC 
GCGGCCCTGCCGCTGGGGATGGGCAGTACCCTGCTGGTGGGGCTGTTCTTCGGGCTCTATCCGGCGGTCTCG 
GCGGCTCGCCTGCAACCGGTCGAGGCGCTGCGCGATGAATAG