ViewGene
Locus Name:
GeneID:
Location:

GeneID:1654
TrivialName: PA14_12530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12530
PAO1 Ortholog Locus:PA3969
Sequence Length:1086
Protein Length:361
Start: 1077872
Stop: 1076787
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07356.1|AE004814_11 (AE004814) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 360/361 (99%), Positives = 361/361 (100%)
Sequence:
ATGCCCTCCCTGCGTCCCACCTGGCTGATCAGCCTGCTGACCCTGGCCGGCTGCGCTGGCAGCGCCTATCAG
GGTCCGCCTTCGGACCATTTCGACGGCGAACGTTTCCGCAATATCCAGCCGACCGCGCACAAGAGCCTGCGC
GACCTGCTCAAGTGGCAGTGGAACCGCCCGCCGCAACGCCCGTGGGTCGCCCTGCCGCCGACGGCAACGCCG
CCAAGGGTGAACGAGCGCGCCCGCGGCGAAGAACTGCGGGTCACCTACATCAACCACGCCACCCTGCTGATC
CAGCACCGCGGCCTGAACATCCTCACCGACCCGGTCTGGTCGCAACGGGTCAGCCCGCTCGCCTTCATCGGC
CCGAAGCGCCACCATCCGCCCGGGTTGACGCTCGACCAGTTGCCGCCGATCGACCTGGTGCTGGTGAGCCAC
AACCACTACGACCACCTCGACCTGGAAACCCTGCGCCAGCTCCACCGGCGCTGGCCGACGGCCAAGGTAGTC
AGCGGCCTGGGCAACGCCGGGCTGATCCGCCAGACAGGTTTCGCCGACGTCGTGGAGATCGACTGGTGGCAG
GCCGTGCCGCTGGGCGCTGGCCTGACGCTGCATGGCGTACCGGTGCAGCACTGGTCGTCGCGCACCCGCAGC
GACACCAACCGCACGCTCTGGCTCGGCTTCGTCATCGACTCGCCGGACGGCCCGCTGCTGTTTCCCGGCGAT
ACCGGGCTCGGCCCGGAGTTCGGGCTGATCCACCAGCGCTTCGGGGCGATGCGTTTCGCCGCCCTGCCGATC
GGCGCCTACGAGCCGCGCTGGTTCATGCGCGACCACCACATGAATCCCGACGACGCGGTGCAGGCCCATCGC
ACGCTGCAGGCGCAGACCAGCATGGCCATCCACTTCGGTACCTTCAATCTCACCGACGAACAGCAGGACGAC
CCGCCCAAGGCACTCCAGGCGGCGCTGCGCAGCCAAGGCGTGGACCCGGCGACCTTCGGCACGCCGAAACCC
GGCGAGCAGTGGCGCGTCGCACCGCGCAACGTCGCTCAGGAGGCCGAGGCCACCAGGCGGGAGCAGCAGTTG
CGGTAG
Translation:
MPSLRPTWLISLLTLAGCAGSAYQGPPSDHFDGERFRNIQPTAHKSLRDLLKWQWNRPPQRPWVALPPTATP
PRVNERARGEELRVTYINHATLLIQHRGLNILTDPVWSQRVSPLAFIGPKRHHPPGLTLDQLPPIDLVLVSH
NHYDHLDLETLRQLHRRWPTAKVVSGLGNAGLIRQTGFADVVEIDWWQAVPLGAGLTLHGVPVQHWSSRTRS
DTNRTLWLGFVIDSPDGPLLFPGDTGLGPEFGLIHQRFGAMRFAALPIGAYEPRWFMRDHHMNPDDAVQAHR
TLQAQTSMAIHFGTFNLTDEQQDDPPKALQAALRSQGVDPATFGTPKPGEQWRVAPRNVAQEAEATRREQQL
R*
AnnotationID:1663GeneID:1654
AnnotatorUID: urbach
Modification Date/Time: 2004-05-24 12:12:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3969
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20458




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1654
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2923
                           PA3969_tr
                           translation of PA3969
                           361
                           99.72
                           99.99
                           0
                           1957.0
     

     
     
91254
                           gb|AAG07356.1|AE004814_11
                           (AE004814) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           361
                           99.72
                           99.99
                           0
                           1957.0
     

     
     
91255
                           dbj|BAB51001.1|
                           (AP003003) hypothetical protein [Mesorhizobium loti]
                           370
                           44.32
                           54.32
                           29
                           732.0
     

     
     
91257
                           gb|AAL43677.1|
                           (AE009216) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           378
                           41.53
                           54.49
                           39
                           712.0
     

     
     
91259
                           gb|AAO28659.1|
                           (AE012556) conserved hypothetical protein [Xylella fastidiosa Temecula1]
                           373
                           41.01
                           54.42
                           53
                           700.0
     

     






      

          
GC ORFID: 44656How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3969Glimmer Score: 

          
Start: 3876066Stop: 3877151

          
Length: 1086


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3969 translation of PA3969Homolog Bit Score 758.0

          
Other Homologs:  t_PA3969 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCTCCCTGCGTCCCACCTGGCTGATCAGCCTGCTGACCCTGGCCGGCTGCGCTGGCAGCGCCTATCAG 
GGTCCGCCTTCGGACCATTTCGACGGCGAACGTTTCCGCAATATCCAGCCGACCGCGCACAAGAGCCTGCGC 
GACCTGCTCAAGTGGCAGTGGAACCGCCCGCCGCAACGCCCGTGGGTCGCCCTGCCGCCGACGGCAACGCCG 
CCAAGGGTGAACGAGCGCGCCCGCGGCGAAGAACTGCGGGTCACCTACATCAACCACGCCACCCTGCTGATC 
CAGCACCGCGGCCTGAACATCCTCACCGACCCGGTCTGGTCGCAACGGGTCAGCCCGCTCGCCTTCATCGGC 
CCGAAGCGCCACCATCCGCCCGGGTTGACGCTCGACCAGTTGCCGCCGATCGACCTGGTGCTGGTGAGCCAC 
AACCACTACGACCACCTCGACCTGGAAACCCTGCGCCAGCTCCACCGGCGCTGGCCGACGGCCAAGGTAGTC 
AGCGGCCTGGGCAACGCCGGGCTGATCCGCCAGACAGGTTTCGCCGACGTCGTGGAGATCGACTGGTGGCAG 
GCCGTGCCGCTGGGCGCTGGCCTGACGCTGCATGGCGTACCGGTGCAGCACTGGTCGTCGCGCACCCGCAGC 
GACACCAACCGCACGCTCTGGCTCGGCTTCGTCATCGACTCGCCGGACGGCCCGCTGCTGTTTCCCGGCGAT 
ACCGGGCTCGGCCCGGAGTTCGGGCTGATCCACCAGCGCTTCGGGGCGATGCGTTTCGCCGCCCTGCCGATC 
GGCGCCTACGAGCCGCGCTGGTTCATGCGCGACCACCACATGAATCCCGACGACGCGGTGCAGGCCCATCGC 
ACGCTGCAGGCGCAGACCAGCATGGCCATCCACTTCGGTACCTTCAATCTCACCGACGAACAGCAGGACGAC 
CCGCCCAAGGCACTCCAGGCGGCGCTGCGCAGCCAAGGCGTGGACCCGGCGACCTTCGGCACGCCGAAACCC 
GGCGAGCAGTGGCGCGTCGCACCGCGCAACGTCGCTCAGGAGGCCGAGGCCACCAGGCGGGAGCAGCAGTTG 
CGGTAG