ViewGene
Locus Name:
GeneID:
Location:

GeneID:1653
TrivialName: PA14_20100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20100
PAO1 Ortholog Locus:PA3401
Sequence Length:1173
Protein Length:390
Start: 1732031
Stop: 1733203
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06789.1|AE004761_5 (AE004761) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 388/390 (99%), Positives = 390/390 (100%)
Sequence:
ATGGCGTGGGCCGCGCTGAAGCGCAACGCCAGCCGTTTCGTCCAGGCGTTCAACACCGAGACGCGGATCGCC
TGCCGCAGCTGGACCATCCACTGGCTCGGCTGGTGCTGGCCGCTGCTGCTGTTCGGCGTGATCAGCGGCGTC
TACCAGGCCGGTACCCTGCTGGACATGCCGCTGGCGGTGGTCGACAAGGACCATAGCCAGCTGTCGCGCAAG
CTGATCCGCGACCTCGACGCGACCTCCCACGCCCAGGTGATCACCGTTCCCGCCGGCGTCCAGGAGGGGCTC
GACGCGATCCGTCGGGCCGATGCCTACGCCTTGCTCTACATCCCGCCGGACTTCGAGGCCGACGTGCTCGGC
GGGCGCGCGCCGAAGGCCGAGCTGTACTACAACGCGCTGCTGTATTCGGCCGGCTACGCCGCCACCCAGGAC
TTCTCGGCGCTGGTCGCCAGCCTCAACGGCGAATTGCGTCCGCGCCTGGCCGCCGGGATGCCGGCGGCGCTG
CCGCACCTGGCGAGCATCAGCGTGTCCTACGACAGCCTGTTCAATGCCAGCGGCAACTACATCTATTACCAG
CAGTTCGCCGCCATCGTGCACCTGCTACAGCTGTTCGTGATCGTCACCATGGTCCATGTGCTGGCCCGCGAG
GCGCCGGAACTGCGCGCCTCCTCGCCGCACATCCTGCGGGCCAAGGCCCTCGGCGTACGCCTGGTGGGCAAA
CTGGCGCCCTACACGCTGCTGTTCACCGCGCTGCTGATGCTGGAAATCTTCCTGCTGGTGGCGTTCTCCGGC
GCGCGCATCAACGGCAGCCCGCTGGCGATGCTGATGATCACGCTGTTCTACGTGATCGCCGCGCAGAGCGTC
GGGCTGGTGCTGTTCGTCTTCACCGCCAACCGCTTCACCGCCTATTCGCTGGTGGGCATGCTGATCGGCGTC
GCCCAGACCTACTCGGGAGTGCTGATCCCGGAACTGGCGATGCCGACCCTGGCGCGGGTGATCGCCGAGGCC
GAGCCGCTGACCCACACCCTGCACGGCCTGTTCGACCAGTTCCTGCGCCAGGCGCCGCCCAGTTCGGCGCTC
TACACCTGCGCCAAGCTGGCGCTGTACCCGCTGATCGCCTACATGATCGCCAAGATGCGCCTGCGCAGCCGC
CTGGACCTGAGCCCGATATGA
Translation:
MAWAALKRNASRFVQAFNTETRIACRSWTIHWLGWCWPLLLFGVISGVYQAGTLLDMPLAVVDKDHSQLSRK
LIRDLDATSHAQVITVPAGVQEGLDAIRRADAYALLYIPPDFEADVLGGRAPKAELYYNALLYSAGYAATQD
FSALVASLNGELRPRLAAGMPAALPHLASISVSYDSLFNASGNYIYYQQFAAIVHLLQLFVIVTMVHVLARE
APELRASSPHILRAKALGVRLVGKLAPYTLLFTALLMLEIFLLVAFSGARINGSPLAMLMITLFYVIAAQSV
GLVLFVFTANRFTAYSLVGMLIGVAQTYSGVLIPELAMPTLARVIAEAEPLTHTLHGLFDQFLRQAPPSSAL
YTCAKLALYPLIAYMIAKMRLRSRLDLSPI*
AnnotationID:1662GeneID:1653
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 16:04:37
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type multidrug transport system, permease component
Cell Localization:()
Synonyms:PA3401
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20456




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32163




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1653_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1653
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2922
                           PA3401_tr
                           translation of PA3401
                           390
                           99.48
                           99.99
                           0
                           1956.0
     

     
     
91252
                           gb|AAG06789.1|AE004761_5
                           (AE004761) hypothetical protein PA3401 [Pseudomonas aeruginosa PAO1]
                           390
                           99.48
                           99.99
                           0
                           1956.0
     

     
     
91253
                           emb|CAE16887.1|
                           (BX571874) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           396
                           47.22
                           64.89
                           21
                           933.0
     

     






      

          
GC ORFID: 44655How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3401Glimmer Score: 

          
Start: 3221901Stop: 3220729

          
Length: 1173


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3401 translation of PA3401Homolog Bit Score 758.0

          
Other Homologs:  t_PA3401 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGTGGGCCGCGCTGAAGCGCAACGCCAGCCGTTTCGTCCAGGCGTTCAACACCGAGACGCGGATCGCC 
TGCCGCAGCTGGACCATCCACTGGCTCGGCTGGTGCTGGCCGCTGCTGCTGTTCGGCGTGATCAGCGGCGTC 
TACCAGGCCGGTACCCTGCTGGACATGCCGCTGGCGGTGGTCGACAAGGACCATAGCCAGCTGTCGCGCAAG 
CTGATCCGCGACCTCGACGCGACCTCCCACGCCCAGGTGATCACCGTTCCCGCCGGCGTCCAGGAGGGGCTC 
GACGCGATCCGTCGGGCCGATGCCTACGCCTTGCTCTACATCCCGCCGGACTTCGAGGCCGACGTGCTCGGC 
GGGCGCGCGCCGAAGGCCGAGCTGTACTACAACGCGCTGCTGTATTCGGCCGGCTACGCCGCCACCCAGGAC 
TTCTCGGCGCTGGTCGCCAGCCTCAACGGCGAATTGCGTCCGCGCCTGGCCGCCGGGATGCCGGCGGCGCTG 
CCGCACCTGGCGAGCATCAGCGTGTCCTACGACAGCCTGTTCAATGCCAGCGGCAACTACATCTATTACCAG 
CAGTTCGCCGCCATCGTGCACCTGCTACAGCTGTTCGTGATCGTCACCATGGTCCATGTGCTGGCCCGCGAG 
GCGCCGGAACTGCGCGCCTCCTCGCCGCACATCCTGCGGGCCAAGGCCCTCGGCGTACGCCTGGTGGGCAAA 
CTGGCGCCCTACACGCTGCTGTTCACCGCGCTGCTGATGCTGGAAATCTTCCTGCTGGTGGCGTTCTCCGGC 
GCGCGCATCAACGGCAGCCCGCTGGCGATGCTGATGATCACGCTGTTCTACGTGATCGCCGCGCAGAGCGTC 
GGGCTGGTGCTGTTCGTCTTCACCGCCAACCGCTTCACCGCCTATTCGCTGGTGGGCATGCTGATCGGCGTC 
GCCCAGACCTACTCGGGAGTGCTGATCCCGGAACTGGCGATGCCGACCCTGGCGCGGGTGATCGCCGAGGCC 
GAGCCGCTGACCCACACCCTGCACGGCCTGTTCGACCAGTTCCTGCGCCAGGCGCCGCCCAGTTCGGCGCTC 
TACACCTGCGCCAAGCTGGCGCTGTACCCGCTGATCGCCTACATGATCGCCAAGATGCGCCTGCGCAGCCGC 
CTGGACCTGAGCCCGATATGA