ViewGene
Locus Name:
GeneID:
Location:

GeneID:1650
TrivialName: PA14_46800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46800
PAO1 Ortholog Locus:PA1352
Sequence Length:1212
Protein Length:403
Start: 4167327
Stop: 4168538
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04741.1|AE004564_10 (AE004564) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 397/403 (98%), Positives = 399/403 (99%)
Sequence:
ATGCCATCCTCGCCATCCTCCCTCCCCTCCGCGCTGGTGCTGCTGTTCGCCGTCGCCTGCGGTCTCAGCGTG
GCCAACGTCTATTACGCCCAGCCGCTGCTGGACGTCCTCGGTGCCGAGTTCGCCATCAGCCAGGCCGGGGTC
GGCCTGCTGTTCGGCGCGACCCAAGCCGGTTGCGCCCTGGCGCTGCTGCTGGTGGTGCCGCTGGGCGACCTG
CTGGAGCGGCGCCGGCTGATGTTCGTCCAGCTCCTGCTGCTGGTGCTGTCGCTGCTGCTGGTGGGCTTCGCC
GGCGATACCCTCGGCCTGGCGCTGGGGCTGCTCGGACTGGGCCTGCTCGGCACCGCCATGACCCAGGGACTG
CTGGCCTACGCCGCGGCGCTGGCGGCGCCTGGCGAGCGCGGGCGGGTGGTCGGCGCGGCGCAGGGCGGCGTG
GTGATCGGCCTGCTGCTGGCGCGCAGCCTGGCCGGGCTGCTCGCCGACCTCGGCGGCTGGCGCAGCGTCTAT
CTGGTCTCGGCAGCGAGCATGGGCGGGCTTGGCCTGCTGCTCTGGCGGGTACTGCCGGCGGAGCCGAGCAAC
GAACTGGGGCTGTCCTACCGGCAGCTGCTCGGCTCGATGTTCGGCCTGCTGGCGAGCCAGCGCGTGCTGCAG
GTGCGCGGCCTGCTCGGGCTGTTGATGTTCGCCGCCTTCGGGGTGTTCTGGAGCAGCCTGGTATTGCTGCTC
GGCGCGCCGCCGTATTCGCTGTCGCACAGCGCCATCGGCGCCTTCGGCCTGGTCGGCGCGCTCGGCGCGCTG
GGCGCGGCGCGGGCCGGCAGCCTCGCCGATCGCGGCCACGCCCAGGCGCTCAGCGGCGGCGCCCTGCTGCTG
TTGCTGCTGTCCTGGCTGCCGCTCGCCCTCGGCGCGCATTCGCTGGCGGCGCTGATTCTCGGCGTGCTGCTG
CTCGATCTCGCCGGCCAGGCGATCCATGTGCTCAACCAGAGCCTGGTCTTCGCCATCGACCCGCGCGCCCAC
AGCCGCCTGGTGGGTTGCTACATGCTGTTCTACGCCGCCGGCAGCGGCCTCGGCGCCAGCGCCGGCACCGCC
ATGTACGCCTGGGCCGGCTGGGACGCGGTGAGCCTGCTCGGCGCAGCGATCAGCCTGGCGGCCCTGGCGTTC
TGGTGGTTCACCCGCGGCGTTGGCGGCGAAGCGCGGACGGCCTGCGCCAACGGCGCCTGA
Translation:
MPSSPSSLPSALVLLFAVACGLSVANVYYAQPLLDVLGAEFAISQAGVGLLFGATQAGCALALLLVVPLGDL
LERRRLMFVQLLLLVLSLLLVGFAGDTLGLALGLLGLGLLGTAMTQGLLAYAAALAAPGERGRVVGAAQGGV
VIGLLLARSLAGLLADLGGWRSVYLVSAASMGGLGLLLWRVLPAEPSNELGLSYRQLLGSMFGLLASQRVLQ
VRGLLGLLMFAAFGVFWSSLVLLLGAPPYSLSHSAIGAFGLVGALGALGAARAGSLADRGHAQALSGGALLL
LLLSWLPLALGAHSLAALILGVLLLDLAGQAIHVLNQSLVFAIDPRAHSRLVGCYMLFYAAGSGLGASAGTA
MYAWAGWDAVSLLGAAISLAALAFWWFTRGVGGEARTACANGA*
AnnotationID:1659GeneID:1650
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:59
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1352
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative major facilitator family transporter
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32826.1| (BX640444) putative membrane protein [Bordetella bronchiseptica]
          Length = 418

 Score =  457 bits (1175), Expect = e-128
 Identities = 244/394 (61%), Positives = 285/394 (72%)

>gb|AAN66131.1|AE016241_8 (AE016775) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 401

 Score =  346 bits (888), Expect = 1e-94
 Identities = 193/395 (48%), Positives = 253/395 (64%), Gaps = 2/395 (0%)

>emb|CAC92497.1| (AJ414156) probable sugar transporter [Yersinia pestis CO92]
          Length = 399

 Score =  322 bits (825), Expect = 3e-87
 Identities = 174/378 (46%), Positives = 239/378 (63%), Gaps = 2/378 (0%)






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  97.5% aligned
Score = 81.4 bits (201), Expect = 2e-16
Identities = 109/389 (28%), Positives = 157/389 (40%), Gaps = 5/389 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20450




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37475




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1650_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1650
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2912
                           PA1352_tr
                           translation of PA1352
                           403
                           98.51
                           99.00
                           0
                           1958.0
     

     
     
90849
                           gb|AAG04741.1|AE004564_10
                           (AE004564) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           403
                           98.51
                           99.00
                           0
                           1958.0
     

     
     
90851
                           emb|CAE36571.1|
                           (BX640426) putative membrane protein [Bordetella parapertussis]
                           403
                           60.54
                           70.22
                           8
                           1154.0
     

     
     
90850
                           emb|CAE32826.1|
                           (BX640444) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           418
                           58.61
                           68.66
                           15
                           1169.0
     

     
     
90853
                           gb|AAN66131.1|AE016241_8
                           (AE016775) major facilitator family transporter [Pseudomonas putida KT2440]
                           405
                           47.65
                           62.46
                           6
                           885.0
     

     






      

          
GC ORFID: 44652How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1352Glimmer Score: 

          
Start: 786582Stop: 785371

          
Length: 1212


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1352 translation of PA1352Homolog Bit Score 758.0

          
Other Homologs:  t_PA1352 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCATCCTCGCCATCCTCCCTCCCCTCCGCGCTGGTGCTGCTGTTCGCCGTCGCCTGCGGTCTCAGCGTG 
GCCAACGTCTATTACGCCCAGCCGCTGCTGGACGTCCTCGGTGCCGAGTTCGCCATCAGCCAGGCCGGGGTC 
GGCCTGCTGTTCGGCGCGACCCAAGCCGGTTGCGCCCTGGCGCTGCTGCTGGTGGTGCCGCTGGGCGACCTG 
CTGGAGCGGCGCCGGCTGATGTTCGTCCAGCTCCTGCTGCTGGTGCTGTCGCTGCTGCTGGTGGGCTTCGCC 
GGCGATACCCTCGGCCTGGCGCTGGGGCTGCTCGGACTGGGCCTGCTCGGCACCGCCATGACCCAGGGACTG 
CTGGCCTACGCCGCGGCGCTGGCGGCGCCTGGCGAGCGCGGGCGGGTGGTCGGCGCGGCGCAGGGCGGCGTG 
GTGATCGGCCTGCTGCTGGCGCGCAGCCTGGCCGGGCTGCTCGCCGACCTCGGCGGCTGGCGCAGCGTCTAT 
CTGGTCTCGGCAGCGAGCATGGGCGGGCTTGGCCTGCTGCTCTGGCGGGTACTGCCGGCGGAGCCGAGCAAC 
GAACTGGGGCTGTCCTACCGGCAGCTGCTCGGCTCGATGTTCGGCCTGCTGGCGAGCCAGCGCGTGCTGCAG 
GTGCGCGGCCTGCTCGGGCTGTTGATGTTCGCCGCCTTCGGGGTGTTCTGGAGCAGCCTGGTATTGCTGCTC 
GGCGCGCCGCCGTATTCGCTGTCGCACAGCGCCATCGGCGCCTTCGGCCTGGTCGGCGCGCTCGGCGCGCTG 
GGCGCGGCGCGGGCCGGCAGCCTCGCCGATCGCGGCCACGCCCAGGCGCTCAGCGGCGGCGCCCTGCTGCTG 
TTGCTGCTGTCCTGGCTGCCGCTCGCCCTCGGCGCGCATTCGCTGGCGGCGCTGATTCTCGGCGTGCTGCTG 
CTCGATCTCGCCGGCCAGGCGATCCATGTGCTCAACCAGAGCCTGGTCTTCGCCATCGACCCGCGCGCCCAC 
AGCCGCCTGGTGGGTTGCTACATGCTGTTCTACGCCGCCGGCAGCGGCCTCGGCGCCAGCGCCGGCACCGCC 
ATGTACGCCTGGGCCGGCTGGGACGCGGTGAGCCTGCTCGGCGCAGCGATCAGCCTGGCGGCCCTGGCGTTC 
TGGTGGTTCACCCGCGGCGTTGGCGGCGAAGCGCGGACGGCCTGCGCCAACGGCGCCTGA