Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAO54362.1| (AE016858) AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 876/1021 (85%), Positives = 962/1021 (94%)
Sequence:
ATGAGCGAAAGTCGTTTCAACCTCTCCGCCCTCGCCGTGCGCGAGCGCTCCGTCACCCTGTTCCTGGTCTGC
CTGATCTCCCTGGCGGGTCTCGTCGCCTTCTTCAAGCTGGGGCGTGCCGAAGACCCGGCCTTCACCATCAAG
GTCATGACCATCGTCACCGCCTGGCCGGGCGCCACCGCCCAGGAAATGCAGGATCAGGTCGCCGAGAAGATC
GAGAAGCGCCTGCAGGAACTGCGCTGGTACGACCGCAGCGAAACCTATACACGCCCGGGGCTGGCCTTCACC
ACCCTGTCGCTGCTCGACACCACCCCACCCTCGGAGGTGCTCGAGGAGTTCTACCAGGCGCGCAAGAAGATC
AGCGACGAGGCCAAGACGCTGCCTACCGGGGTGATCGGCCCGCTGGTCAACGATGAGTATTCGGACGTCACC
TTCGCCCTGTTCGCGCTCAAAGCCAGGGGCGAGCCGCAACGCCACCTGGTGCGCGACGCCGAGACCCTGCGT
CAGCGCCTGCTGCATGTACCGGGCGTGAAGAAGGTCAACATCATCGGCGAACAGGCCGAGCGCATCTTCGTC
GAGTTCTCCCACGAGCGCCTGGCCACCCTGGGCATCGGTCCCCAGGACGTGTTCGCCGCGCTCAACGGGCAG
AACGCCCTGACCCCGGCCGGCTCCGTGGAAACCCGTGGCCCCGACGTGTTCCTGCGTCTGGACGGTGCCTTC
GATGAGCTAGAGAAGATTCGTGACACTCCGATCATCGCCCAAGGCCGCACCTTGAAGCTTTCCGATGTTGCC
ACGGTCAAGCGCGGCTACGAAGACCCGGCCACCTTTCTGATTCGCAACGGCGGCGAACCGGCCCTGTTGCTC
GGCATCATCATGCGTGAAGGCTGGAACGGGCTCGACCTGGGCAAGGCCTTGAACGATGAAGTGCAGCAGATC
AACGCTGAGCTGCCGCTGGGCATGAGCCTGAGCAAGGTCACCGACCAGGCCGTCAACATCAGCGCGTCCGTC
GACGAGTTCATGATCAAGTTCTTCGTCGCGCTGCTGGTGGTGATGCTGGTGTGCTTCGTCAGCATGGGCTGG
CGCGTCGGCGTGGTAGTCGCGGTGGCAGTGCCGCTGACCCTGGCGATGGTCTTCGTGGTGATGGCCGCCACT
GGCAAGAACTTCGACCGCATAACCCTGGGCTCGCTGATCCTCGCCCTTGGCCTGCTGGTAGACGACGCCATC
ATCGCCATCGAGATAATGGTGGTGAAGATGGAGGAAGGCTACGACCGTGTGCGGGCCTCCGCCTATGCCTGG
AGCCACACAGCGGCGCCGATGCTCTCCGGCACCCTGGTTACCGCCGTCGGCTTCATGCCCAACGGCTTCGCC
CGCTCCACGGCCGGCGAATACACCAGCAACATGTTCTGGATCGTCGGCATCGCGCTGATCGCTTCCTGGCTG
GTCGCGGTGATCTTCACGCCGTACTTCGGCGTCAAGCTGCTGCCCGAGATCAAGAAGGTCGAGGGCGGTCAC
GACGCCATCTACGACACTCCGCGCTACAACCACTTTCGTCGGATTCTGGGTAAGGTGATCGCCCACAAGTGG
CTGGTCGCAGGTTCAGTGATAGGGCTGTTCGTGACGGCCGTGCTCGGCATGGCGCTGGTCAAGAAACAGTTC
TTCCCCATCTCCGACCGCCCCGAAGTCATGGTCGAGGTACAGATGCCTTATGGCACCTCGATCCTCCAGACC
AGCGCAGCTGCGGAAAAAGTCGAAGCCTGGCTGGCCCAGCAGGCAGAGGCGAAGATCGTCACGGCGTACATC
GGCCAGGGCGCACCGCGCTTCTTCATGGCCATGAGCCCGGAACTGCCGGATCCGTCGTTCGCCAAGATCGTC
GTACGCACCGACAACCCGGATGAGCGCGAGGCACTCAAGCACAGGCTGCGCAAGGCGATTGCCGAGGGTCTG
GCCAGCGAGGCGCAGGTGCGCGTCAGTCAATTGGTGTTCGGCCCCTACTCGCCCTACCCGGTGGCCTACCGG
ATTAGCGGCCCGGATCCGCAACGCCTGCGCGAGATCGCCAGCGAGGTGCGCCAAGTGATGGATGCCAGCCCG
CTGATGCGGACGGTCAATACCGACTGGGGCACCCGCGCTCCCACGCTGCACTTCAATCTGCAGCAAGATCGC
CTGCAAGCGGTGGGGCTAACCTCCAGTGCCGTTGCGCAGCAGCTGCAGTTTTTGCTCAGCGGCGTGCCCGTC
ACCGCCGTACGCGAAGACATCCGCACGGTGCAGGTCATGGCCCGTGCCGCTGGCGATATTCGCCTCGACCCG
GCACGGGTGATGGATTTCACCCTGGCCGGCGCCAATGGTCAGCGCATCCCGCTGTCGCAGATTGGCGAAGTG
GAGGTACGCATGGAAGAGCCGATCATGCGCTGGCGCGACCGGGTGCCGACTATCACAGTGCGTGGCGATATC
GCCGAAGGCTTGCAACCGCCAGACGTGTCGACCGCCATCAGCCAGCAGTTGCAACCCATCATCGACAGGCTG
CCGAGCGGCTATCGCATCGAGCAAGCGGGCTCCATCGAGGAATCGGGCAAAGCCAGCAAGGCCATGCTGCCG
CTGTTCCCGATCATGCTGGCCGTCACGTTGATCATCATCATCCTGCAGGTGCGCTCGATCGCCGCGATGATC
ATGGTCTTTCTCACCAGCCCGCTGGGGCTGATCGGCGTAGTGCCGACGCTGATCCTGTTCCAGCAGCCGTTC
GGCATCAACGCGCTGGTCGGGCTGATCGCGCTGTCCGGCATCCTCATGCGTAACACGCTGATCCTGATCGGG
CAGATTCGCCAGAACGAAGCGGCGGGTCTCGATCCGTTCCGCGCCGTGGTCGAAGCCACCGTGCAACGCGCT
CGGCCGGTGATCCTCACCGCGCTGGCGGCGATCCTGGCGTTCATCCCACTTACGCATTCCGTGTTCTGGGGC
ACCCTCGCCTACACCCTGATCGGCGGCACCTTCGCCGGCACCGTGCTGACCCTGGTGTTCCTGCCGACCATG
TACGCCATCTGGTTCGGCATCCGCCCCATCCCCCACGAGCCACTCGCGCAGGCACAACCTGCATGA
Translation:
MSESRFNLSALAVRERSVTLFLVCLISLAGLVAFFKLGRAEDPAFTIKVMTIVTAWPGATAQEMQDQVAEKI
EKRLQELRWYDRSETYTRPGLAFTTLSLLDTTPPSEVLEEFYQARKKISDEAKTLPTGVIGPLVNDEYSDVT
FALFALKARGEPQRHLVRDAETLRQRLLHVPGVKKVNIIGEQAERIFVEFSHERLATLGIGPQDVFAALNGQ
NALTPAGSVETRGPDVFLRLDGAFDELEKIRDTPIIAQGRTLKLSDVATVKRGYEDPATFLIRNGGEPALLL
GIIMREGWNGLDLGKALNDEVQQINAELPLGMSLSKVTDQAVNISASVDEFMIKFFVALLVVMLVCFVSMGW
RVGVVVAVAVPLTLAMVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEIMVVKMEEGYDRVRASAYAW
SHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWLVAVIFTPYFGVKLLPEIKKVEGGH
DAIYDTPRYNHFRRILGKVIAHKWLVAGSVIGLFVTAVLGMALVKKQFFPISDRPEVMVEVQMPYGTSILQT
SAAAEKVEAWLAQQAEAKIVTAYIGQGAPRFFMAMSPELPDPSFAKIVVRTDNPDEREALKHRLRKAIAEGL
ASEAQVRVSQLVFGPYSPYPVAYRISGPDPQRLREIASEVRQVMDASPLMRTVNTDWGTRAPTLHFNLQQDR
LQAVGLTSSAVAQQLQFLLSGVPVTAVREDIRTVQVMARAAGDIRLDPARVMDFTLAGANGQRIPLSQIGEV
EVRMEEPIMRWRDRVPTITVRGDIAEGLQPPDVSTAISQQLQPIIDRLPSGYRIEQAGSIEESGKASKAMLP
LFPIMLAVTLIIIILQVRSIAAMIMVFLTSPLGLIGVVPTLILFQQPFGINALVGLIALSGILMRNTLILIG
QIRQNEAAGLDPFRAVVEATVQRARPVILTALAAILAFIPLTHSVFWGTLAYTLIGGTFAGTVLTLVFLPTM
YAIWFGIRPIPHEPLAQAQPA*
AnnotationID:175 GeneID:165
Modification Date/Time:
2005-02-23 20:08:30
GeneProduct: putative AcrB/AcrD/AcrF family protein
Cell Localization Confidence Code: 5
Functional Category: (3) Antibiotic resistance and susceptibility
Alternate Gene Product Name: putative cation efflux system protein
Functional Category Confidence Code: 5
Secondary Functional Category(ies): membrane protein
Homology: >gb|AAO54362.1| (AE016858) AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 1036
Score = 1753 bits (4539), Expect = 0.0
Identities = 876/1021 (85%), Positives = 962/1021 (94%)
>emb|CAD16993.1| (AL646074) PROBABLE TRANSMEMBRANE DRUG EFFLUX PROTEIN [Ralstonia
solanacearum]
Length = 1040
Score = 1738 bits (4502), Expect = 0.0
Identities = 865/1017 (85%), Positives = 962/1017 (94%)
>gb|AAM39740.1| (AE012139) cation efflux system protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 1032
Score = 1692 bits (4381), Expect = 0.0
Identities = 851/1019 (83%), Positives = 937/1019 (91%)
Structural Features: COG0841 , AcrB, Cation/multidrug efflux pump [Defense mechanisms]
CD-Length = 1009 residues, 100.0% aligned
Score = 804 bits (2077), Expect = 0.0
Identities = 295/1026 (28%), Positives = 482/1026 (46%), Gaps = 34/1026 (3%)
pfam00873 , ACR_tran, AcrB/AcrD/AcrF family.
CD-Length = 1017 residues, 99.8% aligned
Score = 431 bits (1110), Expect = 2e-121
Identities = 266/1033 (25%), Positives = 455/1033 (44%), Gaps = 47/1033 (4%)