ViewGene
Locus Name:
GeneID:
Location:

GeneID:165
TrivialName: PA14_46590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46590
PAO1 Ortholog Locus:
Sequence Length:3090
Protein Length:1029
Start: 4147938
Stop: 4151027
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54362.1| (AE016858) AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 876/1021 (85%), Positives = 962/1021 (94%)
Sequence:
ATGAGCGAAAGTCGTTTCAACCTCTCCGCCCTCGCCGTGCGCGAGCGCTCCGTCACCCTGTTCCTGGTCTGC
CTGATCTCCCTGGCGGGTCTCGTCGCCTTCTTCAAGCTGGGGCGTGCCGAAGACCCGGCCTTCACCATCAAG
GTCATGACCATCGTCACCGCCTGGCCGGGCGCCACCGCCCAGGAAATGCAGGATCAGGTCGCCGAGAAGATC
GAGAAGCGCCTGCAGGAACTGCGCTGGTACGACCGCAGCGAAACCTATACACGCCCGGGGCTGGCCTTCACC
ACCCTGTCGCTGCTCGACACCACCCCACCCTCGGAGGTGCTCGAGGAGTTCTACCAGGCGCGCAAGAAGATC
AGCGACGAGGCCAAGACGCTGCCTACCGGGGTGATCGGCCCGCTGGTCAACGATGAGTATTCGGACGTCACC
TTCGCCCTGTTCGCGCTCAAAGCCAGGGGCGAGCCGCAACGCCACCTGGTGCGCGACGCCGAGACCCTGCGT
CAGCGCCTGCTGCATGTACCGGGCGTGAAGAAGGTCAACATCATCGGCGAACAGGCCGAGCGCATCTTCGTC
GAGTTCTCCCACGAGCGCCTGGCCACCCTGGGCATCGGTCCCCAGGACGTGTTCGCCGCGCTCAACGGGCAG
AACGCCCTGACCCCGGCCGGCTCCGTGGAAACCCGTGGCCCCGACGTGTTCCTGCGTCTGGACGGTGCCTTC
GATGAGCTAGAGAAGATTCGTGACACTCCGATCATCGCCCAAGGCCGCACCTTGAAGCTTTCCGATGTTGCC
ACGGTCAAGCGCGGCTACGAAGACCCGGCCACCTTTCTGATTCGCAACGGCGGCGAACCGGCCCTGTTGCTC
GGCATCATCATGCGTGAAGGCTGGAACGGGCTCGACCTGGGCAAGGCCTTGAACGATGAAGTGCAGCAGATC
AACGCTGAGCTGCCGCTGGGCATGAGCCTGAGCAAGGTCACCGACCAGGCCGTCAACATCAGCGCGTCCGTC
GACGAGTTCATGATCAAGTTCTTCGTCGCGCTGCTGGTGGTGATGCTGGTGTGCTTCGTCAGCATGGGCTGG
CGCGTCGGCGTGGTAGTCGCGGTGGCAGTGCCGCTGACCCTGGCGATGGTCTTCGTGGTGATGGCCGCCACT
GGCAAGAACTTCGACCGCATAACCCTGGGCTCGCTGATCCTCGCCCTTGGCCTGCTGGTAGACGACGCCATC
ATCGCCATCGAGATAATGGTGGTGAAGATGGAGGAAGGCTACGACCGTGTGCGGGCCTCCGCCTATGCCTGG
AGCCACACAGCGGCGCCGATGCTCTCCGGCACCCTGGTTACCGCCGTCGGCTTCATGCCCAACGGCTTCGCC
CGCTCCACGGCCGGCGAATACACCAGCAACATGTTCTGGATCGTCGGCATCGCGCTGATCGCTTCCTGGCTG
GTCGCGGTGATCTTCACGCCGTACTTCGGCGTCAAGCTGCTGCCCGAGATCAAGAAGGTCGAGGGCGGTCAC
GACGCCATCTACGACACTCCGCGCTACAACCACTTTCGTCGGATTCTGGGTAAGGTGATCGCCCACAAGTGG
CTGGTCGCAGGTTCAGTGATAGGGCTGTTCGTGACGGCCGTGCTCGGCATGGCGCTGGTCAAGAAACAGTTC
TTCCCCATCTCCGACCGCCCCGAAGTCATGGTCGAGGTACAGATGCCTTATGGCACCTCGATCCTCCAGACC
AGCGCAGCTGCGGAAAAAGTCGAAGCCTGGCTGGCCCAGCAGGCAGAGGCGAAGATCGTCACGGCGTACATC
GGCCAGGGCGCACCGCGCTTCTTCATGGCCATGAGCCCGGAACTGCCGGATCCGTCGTTCGCCAAGATCGTC
GTACGCACCGACAACCCGGATGAGCGCGAGGCACTCAAGCACAGGCTGCGCAAGGCGATTGCCGAGGGTCTG
GCCAGCGAGGCGCAGGTGCGCGTCAGTCAATTGGTGTTCGGCCCCTACTCGCCCTACCCGGTGGCCTACCGG
ATTAGCGGCCCGGATCCGCAACGCCTGCGCGAGATCGCCAGCGAGGTGCGCCAAGTGATGGATGCCAGCCCG
CTGATGCGGACGGTCAATACCGACTGGGGCACCCGCGCTCCCACGCTGCACTTCAATCTGCAGCAAGATCGC
CTGCAAGCGGTGGGGCTAACCTCCAGTGCCGTTGCGCAGCAGCTGCAGTTTTTGCTCAGCGGCGTGCCCGTC
ACCGCCGTACGCGAAGACATCCGCACGGTGCAGGTCATGGCCCGTGCCGCTGGCGATATTCGCCTCGACCCG
GCACGGGTGATGGATTTCACCCTGGCCGGCGCCAATGGTCAGCGCATCCCGCTGTCGCAGATTGGCGAAGTG
GAGGTACGCATGGAAGAGCCGATCATGCGCTGGCGCGACCGGGTGCCGACTATCACAGTGCGTGGCGATATC
GCCGAAGGCTTGCAACCGCCAGACGTGTCGACCGCCATCAGCCAGCAGTTGCAACCCATCATCGACAGGCTG
CCGAGCGGCTATCGCATCGAGCAAGCGGGCTCCATCGAGGAATCGGGCAAAGCCAGCAAGGCCATGCTGCCG
CTGTTCCCGATCATGCTGGCCGTCACGTTGATCATCATCATCCTGCAGGTGCGCTCGATCGCCGCGATGATC
ATGGTCTTTCTCACCAGCCCGCTGGGGCTGATCGGCGTAGTGCCGACGCTGATCCTGTTCCAGCAGCCGTTC
GGCATCAACGCGCTGGTCGGGCTGATCGCGCTGTCCGGCATCCTCATGCGTAACACGCTGATCCTGATCGGG
CAGATTCGCCAGAACGAAGCGGCGGGTCTCGATCCGTTCCGCGCCGTGGTCGAAGCCACCGTGCAACGCGCT
CGGCCGGTGATCCTCACCGCGCTGGCGGCGATCCTGGCGTTCATCCCACTTACGCATTCCGTGTTCTGGGGC
ACCCTCGCCTACACCCTGATCGGCGGCACCTTCGCCGGCACCGTGCTGACCCTGGTGTTCCTGCCGACCATG
TACGCCATCTGGTTCGGCATCCGCCCCATCCCCCACGAGCCACTCGCGCAGGCACAACCTGCATGA
Translation:
MSESRFNLSALAVRERSVTLFLVCLISLAGLVAFFKLGRAEDPAFTIKVMTIVTAWPGATAQEMQDQVAEKI
EKRLQELRWYDRSETYTRPGLAFTTLSLLDTTPPSEVLEEFYQARKKISDEAKTLPTGVIGPLVNDEYSDVT
FALFALKARGEPQRHLVRDAETLRQRLLHVPGVKKVNIIGEQAERIFVEFSHERLATLGIGPQDVFAALNGQ
NALTPAGSVETRGPDVFLRLDGAFDELEKIRDTPIIAQGRTLKLSDVATVKRGYEDPATFLIRNGGEPALLL
GIIMREGWNGLDLGKALNDEVQQINAELPLGMSLSKVTDQAVNISASVDEFMIKFFVALLVVMLVCFVSMGW
RVGVVVAVAVPLTLAMVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEIMVVKMEEGYDRVRASAYAW
SHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWLVAVIFTPYFGVKLLPEIKKVEGGH
DAIYDTPRYNHFRRILGKVIAHKWLVAGSVIGLFVTAVLGMALVKKQFFPISDRPEVMVEVQMPYGTSILQT
SAAAEKVEAWLAQQAEAKIVTAYIGQGAPRFFMAMSPELPDPSFAKIVVRTDNPDEREALKHRLRKAIAEGL
ASEAQVRVSQLVFGPYSPYPVAYRISGPDPQRLREIASEVRQVMDASPLMRTVNTDWGTRAPTLHFNLQQDR
LQAVGLTSSAVAQQLQFLLSGVPVTAVREDIRTVQVMARAAGDIRLDPARVMDFTLAGANGQRIPLSQIGEV
EVRMEEPIMRWRDRVPTITVRGDIAEGLQPPDVSTAISQQLQPIIDRLPSGYRIEQAGSIEESGKASKAMLP
LFPIMLAVTLIIIILQVRSIAAMIMVFLTSPLGLIGVVPTLILFQQPFGINALVGLIALSGILMRNTLILIG
QIRQNEAAGLDPFRAVVEATVQRARPVILTALAAILAFIPLTHSVFWGTLAYTLIGGTFAGTVLTLVFLPTM
YAIWFGIRPIPHEPLAQAQPA*
AnnotationID:175GeneID:165
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:30
Gene Name:
Confidence Code:3
GeneProduct:putative AcrB/AcrD/AcrF family protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:putative cation efflux system protein
Functional Category Confidence Code:5
COGs:COG0841,pfam00873
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54362.1| (AE016858) AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1036

 Score = 1753 bits (4539), Expect = 0.0
 Identities = 876/1021 (85%), Positives = 962/1021 (94%)

>emb|CAD16993.1| (AL646074) PROBABLE TRANSMEMBRANE DRUG EFFLUX PROTEIN [Ralstonia
            solanacearum]
          Length = 1040

 Score = 1738 bits (4502), Expect = 0.0
 Identities = 865/1017 (85%), Positives = 962/1017 (94%)

>gb|AAM39740.1| (AE012139) cation efflux system protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
          Length = 1032

 Score = 1692 bits (4381), Expect = 0.0
 Identities = 851/1019 (83%), Positives = 937/1019 (91%)








 
Structural Features:
COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]
CD-Length = 1009 residues, 100.0% aligned
Score =  804 bits (2077), Expect = 0.0
Identities = 295/1026 (28%), Positives = 482/1026 (46%), Gaps = 34/1026 (3%)

pfam00873, ACR_tran, AcrB/AcrD/AcrF family.
CD-Length = 1017 residues,  99.8% aligned
Score =  431 bits (1110), Expect = 2e-121
Identities = 266/1033 (25%), Positives = 455/1033 (44%), Gaps = 47/1033 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17475




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37403




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:165_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:165
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
19192
                           gb|AAO54362.1|
                           (AE016858) AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1041
                           84.24
                           92.60
                           17
                           4534.0
     

     
     
19193
                           emb|CAD16993.1|
                           (AL646074) PROBABLE TRANSMEMBRANE DRUG EFFLUX PROTEIN [Ralstonia solanacearum]
                           1040
                           83.46
                           92.88
                           11
                           4502.0
     

     
     
19194
                           gb|AAM39740.1|
                           (AE012139) cation efflux system protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           1032
                           82.75
                           91.27
                           3
                           4378.0
     

     
     
19195
                           gb|AAM35330.1|
                           (AE011670) cation efflux system protein [Xanthomonas axonopodis pv. citri str. 306]
                           1034
                           81.14
                           89.94
                           7
                           4300.0
     

     
     
19196
                           gb|AAF84882.1|AE004023_18
                           (AE004023) cation efflux system protein [Xylella fastidiosa 9a5c]
                           1029
                           79.49
                           90.08
                           9
                           4273.0
     

     






      

          
GC ORFID: 43167How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold11_revised_gene1944Glimmer Score: 

          
Start: 805971Stop: 802882

          
Length: 3090


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold11_revised_gene1944 related to: gi|15838674|ref|NP_299362.1| (NC_002488) cation efflux system protein [Xylella fastidiosa 9a5c] pir||B82604 cation efflux system protein XF2083 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF84882.Homolog Bit Score 1629.0

          
Other Homologs:  t_PA3676 (ORF: BLASTX 783.0), psyr_15may02_Scaffold11_revised_gene1944 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAAGTCGTTTCAACCTCTCCGCCCTCGCCGTGCGCGAGCGCTCCGTCACCCTGTTCCTGGTCTGC 
CTGATCTCCCTGGCGGGTCTCGTCGCCTTCTTCAAGCTGGGGCGTGCCGAAGACCCGGCCTTCACCATCAAG 
GTCATGACCATCGTCACCGCCTGGCCGGGCGCCACCGCCCAGGAAATGCAGGATCAGGTCGCCGAGAAGATC 
GAGAAGCGCCTGCAGGAACTGCGCTGGTACGACCGCAGCGAAACCTATACACGCCCGGGGCTGGCCTTCACC 
ACCCTGTCGCTGCTCGACACCACCCCACCCTCGGAGGTGCTCGAGGAGTTCTACCAGGCGCGCAAGAAGATC 
AGCGACGAGGCCAAGACGCTGCCTACCGGGGTGATCGGCCCGCTGGTCAACGATGAGTATTCGGACGTCACC 
TTCGCCCTGTTCGCGCTCAAAGCCAGGGGCGAGCCGCAACGCCACCTGGTGCGCGACGCCGAGACCCTGCGT 
CAGCGCCTGCTGCATGTACCGGGCGTGAAGAAGGTCAACATCATCGGCGAACAGGCCGAGCGCATCTTCGTC 
GAGTTCTCCCACGAGCGCCTGGCCACCCTGGGCATCGGTCCCCAGGACGTGTTCGCCGCGCTCAACGGGCAG 
AACGCCCTGACCCCGGCCGGCTCCGTGGAAACCCGTGGCCCCGACGTGTTCCTGCGTCTGGACGGTGCCTTC 
GATGAGCTAGAGAAGATTCGTGACACTCCGATCATCGCCCAAGGCCGCACCTTGAAGCTTTCCGATGTTGCC 
ACGGTCAAGCGCGGCTACGAAGACCCGGCCACCTTTCTGATTCGCAACGGCGGCGAACCGGCCCTGTTGCTC 
GGCATCATCATGCGTGAAGGCTGGAACGGGCTCGACCTGGGCAAGGCCTTGAACGATGAAGTGCAGCAGATC 
AACGCTGAGCTGCCGCTGGGCATGAGCCTGAGCAAGGTCACCGACCAGGCCGTCAACATCAGCGCGTCCGTC 
GACGAGTTCATGATCAAGTTCTTCGTCGCGCTGCTGGTGGTGATGCTGGTGTGCTTCGTCAGCATGGGCTGG 
CGCGTCGGCGTGGTAGTCGCGGTGGCAGTGCCGCTGACCCTGGCGATGGTCTTCGTGGTGATGGCCGCCACT 
GGCAAGAACTTCGACCGCATAACCCTGGGCTCGCTGATCCTCGCCCTTGGCCTGCTGGTAGACGACGCCATC 
ATCGCCATCGAGATAATGGTGGTGAAGATGGAGGAAGGCTACGACCGTGTGCGGGCCTCCGCCTATGCCTGG 
AGCCACACAGCGGCGCCGATGCTCTCCGGCACCCTGGTTACCGCCGTCGGCTTCATGCCCAACGGCTTCGCC 
CGCTCCACGGCCGGCGAATACACCAGCAACATGTTCTGGATCGTCGGCATCGCGCTGATCGCTTCCTGGCTG 
GTCGCGGTGATCTTCACGCCGTACTTCGGCGTCAAGCTGCTGCCCGAGATCAAGAAGGTCGAGGGCGGTCAC 
GACGCCATCTACGACACTCCGCGCTACAACCACTTTCGTCGGATTCTGGGTAAGGTGATCGCCCACAAGTGG 
CTGGTCGCAGGTTCAGTGATAGGGCTGTTCGTGACGGCCGTGCTCGGCATGGCGCTGGTCAAGAAACAGTTC 
TTCCCCATCTCCGACCGCCCCGAAGTCATGGTCGAGGTACAGATGCCTTATGGCACCTCGATCCTCCAGACC 
AGCGCAGCTGCGGAAAAAGTCGAAGCCTGGCTGGCCCAGCAGGCAGAGGCGAAGATCGTCACGGCGTACATC 
GGCCAGGGCGCACCGCGCTTCTTCATGGCCATGAGCCCGGAACTGCCGGATCCGTCGTTCGCCAAGATCGTC 
GTACGCACCGACAACCCGGATGAGCGCGAGGCACTCAAGCACAGGCTGCGCAAGGCGATTGCCGAGGGTCTG 
GCCAGCGAGGCGCAGGTGCGCGTCAGTCAATTGGTGTTCGGCCCCTACTCGCCCTACCCGGTGGCCTACCGG 
ATTAGCGGCCCGGATCCGCAACGCCTGCGCGAGATCGCCAGCGAGGTGCGCCAAGTGATGGATGCCAGCCCG 
CTGATGCGGACGGTCAATACCGACTGGGGCACCCGCGCTCCCACGCTGCACTTCAATCTGCAGCAAGATCGC 
CTGCAAGCGGTGGGGCTAACCTCCAGTGCCGTTGCGCAGCAGCTGCAGTTTTTGCTCAGCGGCGTGCCCGTC 
ACCGCCGTACGCGAAGACATCCGCACGGTGCAGGTCATGGCCCGTGCCGCTGGCGATATTCGCCTCGACCCG 
GCACGGGTGATGGATTTCACCCTGGCCGGCGCCAATGGTCAGCGCATCCCGCTGTCGCAGATTGGCGAAGTG 
GAGGTACGCATGGAAGAGCCGATCATGCGCTGGCGCGACCGGGTGCCGACTATCACAGTGCGTGGCGATATC 
GCCGAAGGCTTGCAACCGCCAGACGTGTCGACCGCCATCAGCCAGCAGTTGCAACCCATCATCGACAGGCTG 
CCGAGCGGCTATCGCATCGAGCAAGCGGGCTCCATCGAGGAATCGGGCAAAGCCAGCAAGGCCATGCTGCCG 
CTGTTCCCGATCATGCTGGCCGTCACGTTGATCATCATCATCCTGCAGGTGCGCTCGATCGCCGCGATGATC 
ATGGTCTTTCTCACCAGCCCGCTGGGGCTGATCGGCGTAGTGCCGACGCTGATCCTGTTCCAGCAGCCGTTC 
GGCATCAACGCGCTGGTCGGGCTGATCGCGCTGTCCGGCATCCTCATGCGTAACACGCTGATCCTGATCGGG 
CAGATTCGCCAGAACGAAGCGGCGGGTCTCGATCCGTTCCGCGCCGTGGTCGAAGCCACCGTGCAACGCGCT 
CGGCCGGTGATCCTCACCGCGCTGGCGGCGATCCTGGCGTTCATCCCACTTACGCATTCCGTGTTCTGGGGC 
ACCCTCGCCTACACCCTGATCGGCGGCACCTTCGCCGGCACCGTGCTGACCCTGGTGTTCCTGCCGACCATG 
TACGCCATCTGGTTCGGCATCCGCCCCATCCCCCACGAGCCACTCGCGCAGGCACAACCTGCATGA