ViewGene

Locus Name:
GeneID:
Location:

GeneID:1649
TrivialName: PA14_51190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51190
PAO1 Ortholog Locus:PA1016
Sequence Length:1152
Protein Length:383
Start: 4550262
Stop: 4549111
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04405.1|AE004534_3 (AE004534) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 383/383 (100%), Positives = 383/383 (100%)
Sequence:
ATGAGCGCGGCCATCCGTGGCAAGACCGCCATCGTCGGCATCGGTAGCGCAGGCGTCGGCGAGGCGCCGGGC
TACAGCGCCATCGAACTGCTCGGCCAGGCGTCGCTCAAGGCCATTGCCGATGCCGGCCTGAAGCTTTCCGAC
ATCGACGCGATCTTCGCCGCCACCAGCTCCCATGCCTTTCCCACCTTGTCGGTCGCCGAATACCTCGGCATC
CGCCCGAAATTCGTGGATGGCACCAATATCGGCGGCTCCAGTTTCGAGCTGCACCTGCTGCAGGCCACTTTG
GCACTGGAGGCCGGTCTCTGCGACGCTGCGCTGATCTGCTACGGCTCCAACCAGCGAACCGCCGGCGGCCGC
CTGGTATCGATGAGCGAGCCACAATGGCACGAGACGCCCTACAAGCCGCGCCACCCGATCACCGCCTATGCC
CTGGCGGCCAGCCGGCACATGCACCAGTACGGCACCACACGCGAGCAGCTCGCCGAGGTGGCGGTCTCTGCC
CGGCAATGGGCCAACCTGAATCCCGAGGCGTTCGCCCGCGGGCCGTTGAGCGTCGATGACGTCCTTGCCGCG
CGGATGGTCAGCGACCCGCTGAGTGCCGCCGACTGCTGCCTGGTCACCGACGGCGGTGGCGCCTGCGTGGTG
GTGCGCGCCGAGCGCGCCCGCGACTTGCCCAATGCGCCGGTGTACTTCCTTGGCGCGGCCGGAGCGCAGTGG
CATCGCTCGATCGTGTCGATGCCCGACCTCACCGTGACGGCGGCCTCGGAAAGCGCTCCGCGAGCCATGCAG
ATGGCCGGTGTGCGGCACGCCGACATCGACCTGGTGATGCTCTACGACGCCTTTACCATCAACACCCTGCTG
TTCCTCGAGGACCTGGGTTTCTGCGCCAAGGGCGAGGGCGGCCCATTCGTCCAGGGCGGACGCATCGCGCCC
GGCGGCGAGCTGGCGGTGAACACCAACGGTGGCGGGCTGTCCTGCGTGCATCCGGGGATGTACGGGATGTTC
CTGATCATCGAGGCGGTGACCCAGCTCCGCCGCCAGGCCGGCGAGCGGCAGTTGGCCAAGGCCGACGTGGCG
TTGCTGCACGGCAACGGCGGCACGCTGTCCAGCCAGGTAACCGCGTTGCTCGGCACCGGCGACACGCTCTAG
Translation:
MSAAIRGKTAIVGIGSAGVGEAPGYSAIELLGQASLKAIADAGLKLSDIDAIFAATSSHAFPTLSVAEYLGI
RPKFVDGTNIGGSSFELHLLQATLALEAGLCDAALICYGSNQRTAGGRLVSMSEPQWHETPYKPRHPITAYA
LAASRHMHQYGTTREQLAEVAVSARQWANLNPEAFARGPLSVDDVLAARMVSDPLSAADCCLVTDGGGACVV
VRAERARDLPNAPVYFLGAAGAQWHRSIVSMPDLTVTAASESAPRAMQMAGVRHADIDLVMLYDAFTINTLL
FLEDLGFCAKGEGGPFVQGGRIAPGGELAVNTNGGGLSCVHPGMYGMFLIIEAVTQLRRQAGERQLAKADVA
LLHGNGGTLSSQVTALLGTGDTL*
AnnotationID:1658GeneID:1649
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 14:02:16
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1016
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0183
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Similar to putative thiolase (Bordetella spp.) and putative Acetyl-CoA
acetyltransferase (COG0183).
Structural Features:
COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism]
        CD-Length = 392 residues,  98.5% aligned
        Score =  187 bits (475), Expect = 2e-48
Genomic Context:
Comment:
ReferenceID:3301
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20448
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1649

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2911 PA1016_tr translation of PA1016 383 99.99 99.99 0 1957.0
90829 gb|AAG04405.1|AE004534_3 (AE004534) hypothetical protein PA1016 [Pseudomonas aeruginosa PAO1] 383 99.99 99.99 0 1957.0
90830 emb|CAE31264.1| (BX640439) putative thiolase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 383 62.14 75.45 0 1234.0
90833 emb|CAE32759.1| (BX640443) putative thiolase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 385 59.22 71.42 2 1171.0
90832 emb|CAE42071.1| (BX640416) putative thiolase [Bordetella pertussis] [Bordetella pertussis Tohama I] 385 59.22 71.42 2 1171.0
GC ORFID: 44651How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1016Glimmer Score:
Start: 403646Stop: 404797
Length: 1152
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1016 translation of PA1016Homolog Bit Score 758.0
Other Homologs: t_PA1016 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCGGCCATCCGTGGCAAGACCGCCATCGTCGGCATCGGTAGCGCAGGCGTCGGCGAGGCGCCGGGC
TACAGCGCCATCGAACTGCTCGGCCAGGCGTCGCTCAAGGCCATTGCCGATGCCGGCCTGAAGCTTTCCGAC
ATCGACGCGATCTTCGCCGCCACCAGCTCCCATGCCTTTCCCACCTTGTCGGTCGCCGAATACCTCGGCATC
CGCCCGAAATTCGTGGATGGCACCAATATCGGCGGCTCCAGTTTCGAGCTGCACCTGCTGCAGGCCACTTTG
GCACTGGAGGCCGGTCTCTGCGACGCTGCGCTGATCTGCTACGGCTCCAACCAGCGAACCGCCGGCGGCCGC
CTGGTATCGATGAGCGAGCCACAATGGCACGAGACGCCCTACAAGCCGCGCCACCCGATCACCGCCTATGCC
CTGGCGGCCAGCCGGCACATGCACCAGTACGGCACCACACGCGAGCAGCTCGCCGAGGTGGCGGTCTCTGCC
CGGCAATGGGCCAACCTGAATCCCGAGGCGTTCGCCCGCGGGCCGTTGAGCGTCGATGACGTCCTTGCCGCG
CGGATGGTCAGCGACCCGCTGAGTGCCGCCGACTGCTGCCTGGTCACCGACGGCGGTGGCGCCTGCGTGGTG
GTGCGCGCCGAGCGCGCCCGCGACTTGCCCAATGCGCCGGTGTACTTCCTTGGCGCGGCCGGAGCGCAGTGG
CATCGCTCGATCGTGTCGATGCCCGACCTCACCGTGACGGCGGCCTCGGAAAGCGCTCCGCGAGCCATGCAG
ATGGCCGGTGTGCGGCACGCCGACATCGACCTGGTGATGCTCTACGACGCCTTTACCATCAACACCCTGCTG
TTCCTCGAGGACCTGGGTTTCTGCGCCAAGGGCGAGGGCGGCCCATTCGTCCAGGGCGGACGCATCGCGCCC
GGCGGCGAGCTGGCGGTGAACACCAACGGTGGCGGGCTGTCCTGCGTGCATCCGGGGATGTACGGGATGTTC
CTGATCATCGAGGCGGTGACCCAGCTCCGCCGCCAGGCCGGCGAGCGGCAGTTGGCCAAGGCCGACGTGGCG
TTGCTGCACGGCAACGGCGGCACGCTGTCCAGCCAGGTAACCGCGTTGCTCGGCACCGGCGACACGCTCTAG