ViewGene
Locus Name:
GeneID:
Location:

GeneID:1648
TrivialName: PA14_08070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08070
PAO1 Ortholog Locus:PA0622
Sequence Length:1161
Protein Length:386
Start: 694084
Stop: 695244
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04011.1|AE004498_6 (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 382/386 (98%), Positives = 384/386 (99%)
Sequence:
ATGAGTTTCTTCCACGGCGTTACGGTAACCAACGTCGATATCGGTGCGCGCACCATCGCGCTGCCGGCCAGC
TCCGTCATCGGCCTCTGCGATGTGTTCACGCCGGGGGCGCAGGCAAGCGCCAAGCCCAACGTTCCGGTGCTG
CTCACCAGCAAGAAGGACGCCGCCGCGGCGTTCGGCATCGGCTCGTCTATCTACCTGGCCTGCGAGGCCATC
TATAACCGTGCCCAGGCCGTGATCGTGGCGGTGGGCGTGGAAGCCGCGGAGACTCCCGAGGCCCAGGCCAGC
GCCGTCATAGGTGGTGTCAGCGCCGCCGGCGAGCGCACCGGACTTCAGGCTCTGCTAGACGGCAAGAGCCGC
TTCAATGCCCAGCCACGTCTACTAGTTGCGCCGGGTCATTCGGCCCAGCAAGCGGTGGCCACCGCCATGGAC
GGGCTGGCCGAGAAACTGCGGGCCATCGCCATTCTCGATGGTCCCAATAGCACCGACGAGGCGGCCGTCGCC
TACGCCAAGAACTTCGGCAGCAAGCGCCTGTTCATGGTCGACCCGGGCGTGCAGGTTTGGGACAGCGCCACC
AATGCCGCACGCAAGGCCCCGGCTTCGGCCTACGCCGCCGGCCTGTTCGCCTGGACCGACGCCGAGTACGGC
TTCTGGTCCTCGCCGTCGAACAAGGAGATCAAGGGCATCACCGGCACCAGCCGTCCGGTGGAGTTCCTCGAC
GGCGATGAGACCTGTCGCGCCAACCTGCTCAACAACGCCAATATCGCCACGATCATTCGCGACGATGGCTAT
CGCCTGTGGGGCAACCGCACCTTGTCCAGCGACAGCAAGTGGGCTTTCGTCACCCGCGTTCGGACCATGGAC
CTGGTGATGGATGCGATCCTCGCCGGGCACAAGTGGGCGGTGGACCGCGGCATCACCAAGACCTACGTGAAG
GATGTCACCGAGGGCCTGCGCGCCTTCATGCGCGATCTGAAGAACCAGGGCGCGGTGATCAACTTCGAGGTC
TATGCCGACCCGGACCTGAACAGCGCCAGCCAGCTGGCCCAGGGCAAGGTGTACTGGAACATCCGCTTCACC
GATGTGCCGCCTGCCGAGAACCCCAATTTCCGTGTCGAGGTGACCGATCAGTGGCTCACCGAAGTTCTGGAT
GTCGCCTAA
Translation:
MSFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGSSIYLACEAI
YNRAQAVIVAVGVEAAETPEAQASAVIGGVSAAGERTGLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMD
GLAEKLRAIAILDGPNSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARKAPASAYAAGLFAWTDAEYG
FWSSPSNKEIKGITGTSRPVEFLDGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMD
LVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFT
DVPPAENPNFRVEVTDQWLTEVLDVA*
AnnotationID:1657GeneID:1648
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:07
Gene Name:
Confidence Code:3
GeneProduct:putative phage tail sheath protein
Cell Localization:()
Synonyms:gpFI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3497,pfam04984
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68667.1|AE016496_1 (AE016785) pyocin R2_PP, tail sheath protein [Pseudomonas putida
           KT2440]
          Length = 388

 Score =  603 bits (1556), Expect = e-172
 Identities = 300/384 (78%), Positives = 333/384 (86%)

>gb|AAO56874.1| (AE016868) major tail sheath protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 387

 Score =  589 bits (1519), Expect = e-168
 Identities = 293/386 (75%), Positives = 326/386 (84%)








 
Structural Features:
COG3497, Phage tail sheath protein FI
CD-Length = 394 residues,  99.5% aligned
Score =  435 bits (1120), Expect = 5e-123
Identities = 200/393 (50%), Positives = 251/393 (63%), Gaps = 8/393 (2%)

pfam04984, Phage tail sheath protein.
CD-Length = 429 residues, 100.0% aligned
Score =  381 bits (979), Expect = 9e-107
Identities = 157/433 (36%), Positives = 218/433 (50%), Gaps = 56/433 (12%)






   
Genomic Context:






   
Comment:
other possible gene name: FIR2


















    ReferenceID:3299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20446




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34596




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1648_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1648
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2910
                           PA0622_tr
                           translation of PA0622
                           386
                           98.96
                           99.48
                           0
                           1961.0
     

     
     
90821
                           gb|AAG04011.1|AE004498_6
                           (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           386
                           98.96
                           99.48
                           0
                           1961.0
     

     
     
90822
                           dbj|BAA83160.1|
                           (AB030825) similar to FI genes of P2, phiCTX, and PS17: tail sheath [Pseudomonas aeruginosa]
                           386
                           98.96
                           99.48
                           0
                           1961.0
     

     
     
90823
                           gb|AAN68667.1|AE016496_1
                           (AE016785) pyocin R2_PP, tail sheath protein [Pseudomonas putida KT2440]
                           388
                           77.31
                           85.82
                           2
                           1555.0
     

     
     
90824
                           gb|AAO56874.1|
                           (AE016868) major tail sheath protein [Pseudomonas syringae pv. tomato str. DC3000]
                           387
                           75.71
                           84.23
                           1
                           1519.0
     

     






      

          
GC ORFID: 44650How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0622Glimmer Score: 

          
Start: 6495427Stop: 6496587

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0622 translation of PA0622Homolog Bit Score 759.0

          
Other Homologs:  t_PA0622 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTTCTTCCACGGCGTTACGGTAACCAACGTCGATATCGGTGCGCGCACCATCGCGCTGCCGGCCAGC 
TCCGTCATCGGCCTCTGCGATGTGTTCACGCCGGGGGCGCAGGCAAGCGCCAAGCCCAACGTTCCGGTGCTG 
CTCACCAGCAAGAAGGACGCCGCCGCGGCGTTCGGCATCGGCTCGTCTATCTACCTGGCCTGCGAGGCCATC 
TATAACCGTGCCCAGGCCGTGATCGTGGCGGTGGGCGTGGAAGCCGCGGAGACTCCCGAGGCCCAGGCCAGC 
GCCGTCATAGGTGGTGTCAGCGCCGCCGGCGAGCGCACCGGACTTCAGGCTCTGCTAGACGGCAAGAGCCGC 
TTCAATGCCCAGCCACGTCTACTAGTTGCGCCGGGTCATTCGGCCCAGCAAGCGGTGGCCACCGCCATGGAC 
GGGCTGGCCGAGAAACTGCGGGCCATCGCCATTCTCGATGGTCCCAATAGCACCGACGAGGCGGCCGTCGCC 
TACGCCAAGAACTTCGGCAGCAAGCGCCTGTTCATGGTCGACCCGGGCGTGCAGGTTTGGGACAGCGCCACC 
AATGCCGCACGCAAGGCCCCGGCTTCGGCCTACGCCGCCGGCCTGTTCGCCTGGACCGACGCCGAGTACGGC 
TTCTGGTCCTCGCCGTCGAACAAGGAGATCAAGGGCATCACCGGCACCAGCCGTCCGGTGGAGTTCCTCGAC 
GGCGATGAGACCTGTCGCGCCAACCTGCTCAACAACGCCAATATCGCCACGATCATTCGCGACGATGGCTAT 
CGCCTGTGGGGCAACCGCACCTTGTCCAGCGACAGCAAGTGGGCTTTCGTCACCCGCGTTCGGACCATGGAC 
CTGGTGATGGATGCGATCCTCGCCGGGCACAAGTGGGCGGTGGACCGCGGCATCACCAAGACCTACGTGAAG 
GATGTCACCGAGGGCCTGCGCGCCTTCATGCGCGATCTGAAGAACCAGGGCGCGGTGATCAACTTCGAGGTC 
TATGCCGACCCGGACCTGAACAGCGCCAGCCAGCTGGCCCAGGGCAAGGTGTACTGGAACATCCGCTTCACC 
GATGTGCCGCCTGCCGAGAACCCCAATTTCCGTGTCGAGGTGACCGATCAGTGGCTCACCGAAGTTCTGGAT 
GTCGCCTAA