ViewGene
Locus Name:
GeneID:
Location:

GeneID:1647
TrivialName: PA14_71420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71420
PAO1 Ortholog Locus:PA5411
Sequence Length:1101
Protein Length:366
Start: 6360027
Stop: 6361127
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08796.1|AE004953_10 (AE004953) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 366/366 (100%), Positives = 366/366 (100%)
Sequence:
ATGTCGAGCAACTTCCTCAATCCGGTCACCACCCAGACCTGGGCCAACGGCCGGCACCTCGTGCGCTGCGTC
AAGGTCATCCAGGAAACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCCTGTTCTTCTTC
AAGCCGGGCCAGTTCGTCACCCTGGAGCTGGAGATCGACGGCGAGCCGGTGATGCGCTCCTACACCATCTCC
AGCTCGCCCTCGGTGCCCTACAGCTTCTCCATCACCATCAAGCGGGTGCCGGGCGGGCGGGTTTCCAACTGG
CTGCACGACAACCTCAAGGAAGGCCAGGAGCTACCGGTGCACGGTCCGGTCGGCCTGTTCAACGCCATCGAC
TTCCCGGCCGACAAGGTGCTGTTCCTCTCCGGCGGGGTCGGCATCACCCCGGTGATGTCCATGGCGCGCTGG
TTCTTCGACACCAACGCCAACGTCGACATGGTCTTCGTCCACAGCGCCCGTTCGCCGAAGGACATCATCTAC
CACCGCGAGCTGGAGCACATGGCCTCGCGGATCGACAACTTCAGCCTGCACATCATCTGCGAGCGCCACGGC
CTCGGCGAGGCCTGGGCCGGCTACCGTGGCTACCTGAACCTGCGCATGCTGGAACTGATCGCCCCGGACTTC
CTCGAGCGGGAAATCTTCTGCTGCGGCCCGACGCCCTATATGAGCGCGGTGAAGCACCTGCTGCAGGGCCAC
GGCTACGACATGAGCCGCTACCACGAGGAAGCCTTCGGGCCGACTCCGCCGGAGGTCCGCGCCGACGTCAGG
GAACTGGCCGCGGAAGCCGCCGAGGCGCCGGAGGTACCGGTCGCCGACCAGCACCAGGTGGAATTCACCGCC
ACCGGCAAGAGCATCCGCGTCAGCCCCGGGGAAACCGTGCACGCCGCCGCCGCCAAGCTCGGCCTGCACATT
CCGAAGGCCTGCGGGATGGGCATCTGCGGCACCTGCAAGGTAATGAAGACCGCCGGCGAGGTGGAGATGGAG
CACAACGGCGGGATCACCGACGAGGATGTCGCCGAAGGCTACATCCTCTCCTGCTGCAGCGTGCCCAAGGGC
GACGTGGTCATCGACTACTGA
Translation:
MSSNFLNPVTTQTWANGRHLVRCVKVIQETWDVRTFCFMADQPILFFFKPGQFVTLELEIDGEPVMRSYTIS
SSPSVPYSFSITIKRVPGGRVSNWLHDNLKEGQELPVHGPVGLFNAIDFPADKVLFLSGGVGITPVMSMARW
FFDTNANVDMVFVHSARSPKDIIYHRELEHMASRIDNFSLHIICERHGLGEAWAGYRGYLNLRMLELIAPDF
LEREIFCCGPTPYMSAVKHLLQGHGYDMSRYHEEAFGPTPPEVRADVRELAAEAAEAPEVPVADQHQVEFTA
TGKSIRVSPGETVHAAAAKLGLHIPKACGMGICGTCKVMKTAGEVEMEHNGGITDEDVAEGYILSCCSVPKG
DVVIDY*
AnnotationID:1656GeneID:1647
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:30
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA5411
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative oxidoreductase, FAD-binding
Functional Category Confidence Code:5
COGs:COG1018
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53946.1| (AE016857) iron-sulfur cluster-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 366

 Score =  657 bits (1694), Expect = 0.0
 Identities = 310/366 (84%), Positives = 340/366 (92%)

>gb|AAN65947.1|AE016223_1 (AE016775) oxidoreductase, FAD-binding, putative [Pseudomonas
           putida KT2440]
          Length = 368

 Score =  637 bits (1643), Expect = 0.0
 Identities = 300/366 (81%), Positives = 332/366 (90%)

>emb|CAD17214.1| (AL646076) PROBABLE FERREDOXIN OXIDOREDUCTASE PROTEIN [Ralstonia
           solanacearum]
          Length = 382

 Score =  335 bits (859), Expect = 3e-91
 Identities = 170/344 (49%), Positives = 224/344 (65%), Gaps = 1/344 (0%)






 
Structural Features:
COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 
CD-Length = 266 residues,  99.6% aligned
Score =  263 bits (673), Expect = 3e-71
Identities = 101/292 (34%), Positives = 145/292 (49%), Gaps = 27/292 (9%)
[Energy production and conversion]






   
Genomic Context:






   
Comment:


















    ReferenceID:3297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20444




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34694




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1647_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1647
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2909
                           PA5411_tr
                           translation of PA5411
                           366
                           99.99
                           99.99
                           0
                           1961.0
     

     
     
90809
                           gb|AAG08796.1|AE004953_10
                           (AE004953) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           366
                           99.99
                           99.99
                           0
                           1961.0
     

     
     
90810
                           gb|AAO53946.1|
                           (AE016857) iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           366
                           84.69
                           92.89
                           0
                           1694.0
     

     
     
90811
                           gb|AAN65947.1|AE016223_1
                           (AE016775) oxidoreductase, FAD-binding, putative [Pseudomonas putida KT2440]
                           368
                           81.52
                           90.21
                           2
                           1643.0
     

     
     
90812
                           emb|CAD17214.1|
                           (AL646076) PROBABLE FERREDOXIN OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           383
                           45.16
                           61.09
                           18
                           856.0
     

     






      

          
GC ORFID: 44649How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5411Glimmer Score: 

          
Start: 5623716Stop: 5624816

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5411 translation of PA5411Homolog Bit Score 759.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8030 (ORF: BLASTX 657.0), t_PA5411 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAGCAACTTCCTCAATCCGGTCACCACCCAGACCTGGGCCAACGGCCGGCACCTCGTGCGCTGCGTC 
AAGGTCATCCAGGAAACCTGGGACGTGCGCACCTTCTGCTTCATGGCCGACCAGCCGATCCTGTTCTTCTTC 
AAGCCGGGCCAGTTCGTCACCCTGGAGCTGGAGATCGACGGCGAGCCGGTGATGCGCTCCTACACCATCTCC 
AGCTCGCCCTCGGTGCCCTACAGCTTCTCCATCACCATCAAGCGGGTGCCGGGCGGGCGGGTTTCCAACTGG 
CTGCACGACAACCTCAAGGAAGGCCAGGAGCTACCGGTGCACGGTCCGGTCGGCCTGTTCAACGCCATCGAC 
TTCCCGGCCGACAAGGTGCTGTTCCTCTCCGGCGGGGTCGGCATCACCCCGGTGATGTCCATGGCGCGCTGG 
TTCTTCGACACCAACGCCAACGTCGACATGGTCTTCGTCCACAGCGCCCGTTCGCCGAAGGACATCATCTAC 
CACCGCGAGCTGGAGCACATGGCCTCGCGGATCGACAACTTCAGCCTGCACATCATCTGCGAGCGCCACGGC 
CTCGGCGAGGCCTGGGCCGGCTACCGTGGCTACCTGAACCTGCGCATGCTGGAACTGATCGCCCCGGACTTC 
CTCGAGCGGGAAATCTTCTGCTGCGGCCCGACGCCCTATATGAGCGCGGTGAAGCACCTGCTGCAGGGCCAC 
GGCTACGACATGAGCCGCTACCACGAGGAAGCCTTCGGGCCGACTCCGCCGGAGGTCCGCGCCGACGTCAGG 
GAACTGGCCGCGGAAGCCGCCGAGGCGCCGGAGGTACCGGTCGCCGACCAGCACCAGGTGGAATTCACCGCC 
ACCGGCAAGAGCATCCGCGTCAGCCCCGGGGAAACCGTGCACGCCGCCGCCGCCAAGCTCGGCCTGCACATT 
CCGAAGGCCTGCGGGATGGGCATCTGCGGCACCTGCAAGGTAATGAAGACCGCCGGCGAGGTGGAGATGGAG 
CACAACGGCGGGATCACCGACGAGGATGTCGCCGAAGGCTACATCCTCTCCTGCTGCAGCGTGCCCAAGGGC 
GACGTGGTCATCGACTACTGA