ViewGene
Locus Name:
GeneID:
Location:

GeneID:1646
TrivialName: PA14_63210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63210
PAO1 Ortholog Locus:PA4781
Sequence Length:1182
Protein Length:393
Start: 5642292
Stop: 5641111
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08167.1|AE004891_9 (AE004891) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 391/393 (99%), Positives = 392/393 (99%)
Sequence:
ATGGAGAGCATGCTGGACAGGCCCGAGCAGGAACTCGTGCTGGTGGTGGACGACACCCCGGACAACCTGCTG
CTGATGCGCGAGCTGCTCGAGGAGCAGTACCGCGTGCGCACCGCCGGCAGCGGCCCGGCCGGGCTGCGGGCG
GCCGTCGAAGAGCCGCGCCCGGACCTGATCCTGCTCGACGTGAACATGCCGGGCATGGACGGCTACGAGGTC
TGCCGACGGCTCAAGGCCGATCCGCTGACCCGCGACATCCCGTTGATGTTTCTCACTGCCCGCGCCGATCGC
GACGACGAGCAACAGGGCCTGGCCCTGGGCGCGGTGGATTACCTGGGCAAGCCGGTGAGCCCGCCGATCGTC
CTGGCGCGGGTGCGCACCCACCTGCAACTGAAGGCCAATGCCGATTTCCTGCGCGACAAGAGCGAATACCTG
GAACTCGAAGTGCGCCGTCGCACGCGCCAGCTGCAACAGTTGCAGGACGCCGTCATCGAAGCCCTGGCAACC
CTTGGCGATCTTCGCGACAACCCGCGCAGCCGCCATCTTCCGCGTATCGAGCGCTATGTCAGGCTGCTCGCC
GAGCACCTGGCGGCGCAGCGGGCGTTCGCCGACGAGCTGACTCCGGAGGCTGTCGACCTGCTGAGCAAGTCG
GCGCTGTTGCATGACATCGGCAAGGTCGCGGTGCCCGACCGGGTCCTGCTCAACCCCGGGCAACTGGACGCC
GCCGACACCGCCCTGCTACAGGGCCATACCCGCGCCGGACGCGACGCCCTGGCCAGCGCCGAGCGGCGGCTC
GGCCAGCCTTCCGGGTTCCTCCGCTTCGCCCGGCAGATCGCCTACAGCCATCACGAACGCTGGGATGGCCGG
GGCTTTCCGGAGGGCCTGGCGGGCGAGCGGATTCCCCTGGCGGCGCGGATCGTCGCCCTGGCCGACCGCTAC
GATGAACTGACCAGCCGGCACGCCTACCGGCCGCCGCTGGCACACGCCGAGGCGGTGCTGTTGATCCAGGCC
GGCGCCGACAGTGAATTCGACCCACGGCTGGTGGAGGCCTTCGTCGCCGTGGCCGACGCTTTCGCCGAGGTT
GCCCAGCGCTACGCCGACAGCGCCGAGGCGCTGGACGTGGAGATGCAGCGGCTGGAACAGGCGGTGGCGGAA
AGCATCGAACTCACCGCGCCACCAGCCTAG
Translation:
MESMLDRPEQELVLVVDDTPDNLLLMRELLEEQYRVRTAGSGPAGLRAAVEEPRPDLILLDVNMPGMDGYEV
CRRLKADPLTRDIPLMFLTARADRDDEQQGLALGAVDYLGKPVSPPIVLARVRTHLQLKANADFLRDKSEYL
ELEVRRRTRQLQQLQDAVIEALATLGDLRDNPRSRHLPRIERYVRLLAEHLAAQRAFADELTPEAVDLLSKS
ALLHDIGKVAVPDRVLLNPGQLDAADTALLQGHTRAGRDALASAERRLGQPSGFLRFARQIAYSHHERWDGR
GFPEGLAGERIPLAARIVALADRYDELTSRHAYRPPLAHAEAVLLIQAGADSEFDPRLVEAFVAVADAFAEV
AQRYADSAEALDVEMQRLEQAVAESIELTAPPA*
AnnotationID:1655GeneID:1646
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 07:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA4781
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3437,cd00156
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA17994.1| (D90910) regulatory components of sensory transduction system
           [Synechocystis sp. PCC 6803]
          Length = 368

 Score =  379 bits (972), Expect = e-104
 Identities = 187/366 (51%), Positives = 255/366 (69%)

>gb|AAO07054.1|AE016808_74 (AE016808) Response regulator [Vibrio vulnificus CMCP6]
          Length = 378

 Score =  334 bits (856), Expect = 6e-91
 Identities = 164/357 (45%), Positives = 240/357 (67%), Gaps = 1/357 (0%)

>gb|AAN53936.1|AE015531_2 (AE015531) response regulator [Shewanella oneidensis MR-1]
          Length = 339

 Score =  271 bits (694), Expect = 4e-72
 Identities = 150/356 (42%), Positives = 213/356 (59%), Gaps = 22/356 (6%)








 
Structural Features:
COG3437, COG3437, Response regulator containing a CheY-like receiver domain 
and an HD-GYP domain 
[Transcription / Signal transduction mechanisms]
CD-Length = 360 residues,  98.9% aligned
Score =  375 bits (964), Expect = 5e-105
Identities = 177/372 (47%), Positives = 241/372 (64%), Gaps = 22/372 (5%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  102 bits (256), Expect = 7e-23
Identities = 56/116 (48%), Positives = 71/116 (61%), Gaps = 4/116 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3295




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20442




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37702




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1646_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1646
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2908
                           PA4781_tr
                           translation of PA4781
                           393
                           99.49
                           99.74
                           0
                           1959.0
     

     
     
90762
                           gb|AAG08167.1|AE004891_9
                           (AE004891) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           393
                           99.49
                           99.74
                           0
                           1959.0
     

     
     
90764
                           gb|AAQ60168.1|
                           (AE016918) probable two component system, transcriptional regulatory protein [Chromobacterium violaceum ATCC 12472]
                           393
                           48.60
                           65.39
                           15
                           947.0
     

     
     
90763
                           dbj|BAA17994.1|
                           (D90910) regulatory components of sensory transduction system [Synechocystis sp. PCC 6803]
                           393
                           47.58
                           64.88
                           25
                           972.0
     

     
     
90765
                           gb|AAQ58557.1|
                           (AE016913) probable two component system, transcriptional regulatory protein [Chromobacterium violaceum ATCC 12472]
                           393
                           46.31
                           62.59
                           33
                           919.0
     

     






      

          
GC ORFID: 44648How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4781Glimmer Score: 

          
Start: 4905972Stop: 4904791

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4781 translation of PA4781Homolog Bit Score 759.0

          
Other Homologs:  t_PA4781 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGAGCATGCTGGACAGGCCCGAGCAGGAACTCGTGCTGGTGGTGGACGACACCCCGGACAACCTGCTG 
CTGATGCGCGAGCTGCTCGAGGAGCAGTACCGCGTGCGCACCGCCGGCAGCGGCCCGGCCGGGCTGCGGGCG 
GCCGTCGAAGAGCCGCGCCCGGACCTGATCCTGCTCGACGTGAACATGCCGGGCATGGACGGCTACGAGGTC 
TGCCGACGGCTCAAGGCCGATCCGCTGACCCGCGACATCCCGTTGATGTTTCTCACTGCCCGCGCCGATCGC 
GACGACGAGCAACAGGGCCTGGCCCTGGGCGCGGTGGATTACCTGGGCAAGCCGGTGAGCCCGCCGATCGTC 
CTGGCGCGGGTGCGCACCCACCTGCAACTGAAGGCCAATGCCGATTTCCTGCGCGACAAGAGCGAATACCTG 
GAACTCGAAGTGCGCCGTCGCACGCGCCAGCTGCAACAGTTGCAGGACGCCGTCATCGAAGCCCTGGCAACC 
CTTGGCGATCTTCGCGACAACCCGCGCAGCCGCCATCTTCCGCGTATCGAGCGCTATGTCAGGCTGCTCGCC 
GAGCACCTGGCGGCGCAGCGGGCGTTCGCCGACGAGCTGACTCCGGAGGCTGTCGACCTGCTGAGCAAGTCG 
GCGCTGTTGCATGACATCGGCAAGGTCGCGGTGCCCGACCGGGTCCTGCTCAACCCCGGGCAACTGGACGCC 
GCCGACACCGCCCTGCTACAGGGCCATACCCGCGCCGGACGCGACGCCCTGGCCAGCGCCGAGCGGCGGCTC 
GGCCAGCCTTCCGGGTTCCTCCGCTTCGCCCGGCAGATCGCCTACAGCCATCACGAACGCTGGGATGGCCGG 
GGCTTTCCGGAGGGCCTGGCGGGCGAGCGGATTCCCCTGGCGGCGCGGATCGTCGCCCTGGCCGACCGCTAC 
GATGAACTGACCAGCCGGCACGCCTACCGGCCGCCGCTGGCACACGCCGAGGCGGTGCTGTTGATCCAGGCC 
GGCGCCGACAGTGAATTCGACCCACGGCTGGTGGAGGCCTTCGTCGCCGTGGCCGACGCTTTCGCCGAGGTT 
GCCCAGCGCTACGCCGACAGCGCCGAGGCGCTGGACGTGGAGATGCAGCGGCTGGAACAGGCGGTGGCGGAA 
AGCATCGAACTCACCGCGCCACCAGCCTAG