ViewGene
Locus Name:
GeneID:
Location:

GeneID:1645
TrivialName: PA14_30630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30630
PAO1 Ortholog Locus:PA2587
Sequence Length:1149
Protein Length:382
Start: 2654014
Stop: 2655162
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05975.1|AE004687_4 (AE004687) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 381/382 (99%), Positives = 382/382 (100%)
Sequence:
ATGACCGTTCTTATCCAGGGGGCCGGGATCGCCGGCCTGGCGCTGGCGCGCGAATTCACCAAGGCAGGCATC
GACTGGCTGCTGGTCGAGCGGGCCAGCGAGATCAGGCCCATCGGTACCGGTATCACCCTGGCGAGCAATGCG
TTGACGGCGTTGTCCAGCACCCTGGATCTCGACCGGCTGTTCCGCCGTGGCATGCCGTTGGCCGGCATCAAC
GTATACGCCCACGACGGTTCGATGCTGATGTCGATGCCTTCCAGTCTGGGTGGGAGTTCCCGCGGCGGCCTG
GCGTTGCAGCGCCACGAGCTGCATGCGGCGCTACTGGAGGGGCTGGATGAGTCGCGCATTCGGGTCGGGGTC
TCCATCGTGCAGATCCTCGACGGACTCGACCACGAACGCGTGACCCTGAGCGACGGCACTGTCCACGACTGT
TCGCTGGTGGTCGGTGCGGATGGCATTCGTTCGAGCGTGCGACGTTATGTCTGGCCGGAGGCGACCTTGCGT
CATTCCGGCGAAACCTGCTGGCGCCTGGTCGTTCCCCATCGGCTGGAGGACGCCGAGCTGGCGGGAGAGGTC
TGGGGGCACGGCAAGCGCCTCGGCTTCATCCAGATCAGCCCGCGCGAGATGTATGTCTACGCGACCCTGAAG
GTGCGCCGGGAGGAGCCCGAGGACGAGGAGGGCTTCGTCACCCCGCAACGGCTGGCCGCCCACTACGCGGAC
TTCGACGGCATCGGCGCGAGCATCGCCCGGCTCATACCGAGCGCCACCACGCTGGTGCACAACGACCTCGAG
GAGTTGGCCGGCGCCTCCTGGTGCCGCGGACGGGTAGTGCTGATCGGCGACGCCGCACACGCCATGACGCCG
AACCTGGGGCAGGGCGCGGCCATGGCCCTGGAGGACGCCTTCCTGCTGGCGCGCCTGTGGTGCCTGGCGCCG
CGCGCCGAGACGCTGATCCTGTTCCAGCAGCAACGCGAGGCGCGGATCGAGTTCATCAGGAAGCAATCCTGG
ATCGTCGGCCGCCTTGGTCAGTGGGAATCGCCCTGGAGCGTCTGGCTGAGGAATACCCTCGTTCGCCTGGTG
CCGAATGCCAGTCGCAGGCGCCTGCACCAGCGTCTTTTCACCGGTGTCGGTGAGATGGCCGCACAGTAG
Translation:
MTVLIQGAGIAGLALAREFTKAGIDWLLVERASEIRPIGTGITLASNALTALSSTLDLDRLFRRGMPLAGIN
VYAHDGSMLMSMPSSLGGSSRGGLALQRHELHAALLEGLDESRIRVGVSIVQILDGLDHERVTLSDGTVHDC
SLVVGADGIRSSVRRYVWPEATLRHSGETCWRLVVPHRLEDAELAGEVWGHGKRLGFIQISPREMYVYATLK
VRREEPEDEEGFVTPQRLAAHYADFDGIGASIARLIPSATTLVHNDLEELAGASWCRGRVVLIGDAAHAMTP
NLGQGAAMALEDAFLLARLWCLAPRAETLILFQQQREARIEFIRKQSWIVGRLGQWESPWSVWLRNTLVRLV
PNASRRRLHQRLFTGVGEMAAQ*
AnnotationID:1654GeneID:1645
AnnotatorUID: diggins
Modification Date/Time: 2006-01-22 10:10:17
Gene Name:pqsH
Confidence Code:2
GeneProduct:putative FAD-dependent monooxygenase
Cell Localization:()
Synonyms:PA2587
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0654
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related 
FAD-dependent oxidoreductases 
[Coenzyme metabolism / Energy production and conversion].
CD-Length = 387 residues,  96.4% aligned
Score =  191 bits (487), Expect = 1e-49
Identities = 127/377 (33%), Positives = 170/377 (45%), Gaps = 14/377 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3293




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20440




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1645
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2907
                           PA2587_tr
                           translation of PA2587
                           382
                           99.73
                           99.99
                           0
                           1960.0
     

     
     
90760
                           gb|AAG05975.1|AE004687_4
                           (AE004687) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
                           382
                           99.73
                           99.99
                           0
                           1960.0
     

     
     
90761
                           gb|AAA73507.1|
                           (U29897) FAD binding protein homolog [Pseudomonas aeruginosa]
                           382
                           74.08
                           74.34
                           96
                           1468.0
     

     






      

          
GC ORFID: 44647How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2587Glimmer Score: 

          
Start: 2299912Stop: 2298764

          
Length: 1149


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2587 translation of PA2587Homolog Bit Score 759.0

          
Other Homologs:  t_PA2587 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTTCTTATCCAGGGGGCCGGGATCGCCGGCCTGGCGCTGGCGCGCGAATTCACCAAGGCAGGCATC 
GACTGGCTGCTGGTCGAGCGGGCCAGCGAGATCAGGCCCATCGGTACCGGTATCACCCTGGCGAGCAATGCG 
TTGACGGCGTTGTCCAGCACCCTGGATCTCGACCGGCTGTTCCGCCGTGGCATGCCGTTGGCCGGCATCAAC 
GTATACGCCCACGACGGTTCGATGCTGATGTCGATGCCTTCCAGTCTGGGTGGGAGTTCCCGCGGCGGCCTG 
GCGTTGCAGCGCCACGAGCTGCATGCGGCGCTACTGGAGGGGCTGGATGAGTCGCGCATTCGGGTCGGGGTC 
TCCATCGTGCAGATCCTCGACGGACTCGACCACGAACGCGTGACCCTGAGCGACGGCACTGTCCACGACTGT 
TCGCTGGTGGTCGGTGCGGATGGCATTCGTTCGAGCGTGCGACGTTATGTCTGGCCGGAGGCGACCTTGCGT 
CATTCCGGCGAAACCTGCTGGCGCCTGGTCGTTCCCCATCGGCTGGAGGACGCCGAGCTGGCGGGAGAGGTC 
TGGGGGCACGGCAAGCGCCTCGGCTTCATCCAGATCAGCCCGCGCGAGATGTATGTCTACGCGACCCTGAAG 
GTGCGCCGGGAGGAGCCCGAGGACGAGGAGGGCTTCGTCACCCCGCAACGGCTGGCCGCCCACTACGCGGAC 
TTCGACGGCATCGGCGCGAGCATCGCCCGGCTCATACCGAGCGCCACCACGCTGGTGCACAACGACCTCGAG 
GAGTTGGCCGGCGCCTCCTGGTGCCGCGGACGGGTAGTGCTGATCGGCGACGCCGCACACGCCATGACGCCG 
AACCTGGGGCAGGGCGCGGCCATGGCCCTGGAGGACGCCTTCCTGCTGGCGCGCCTGTGGTGCCTGGCGCCG 
CGCGCCGAGACGCTGATCCTGTTCCAGCAGCAACGCGAGGCGCGGATCGAGTTCATCAGGAAGCAATCCTGG 
ATCGTCGGCCGCCTTGGTCAGTGGGAATCGCCCTGGAGCGTCTGGCTGAGGAATACCCTCGTTCGCCTGGTG 
CCGAATGCCAGTCGCAGGCGCCTGCACCAGCGTCTTTTCACCGGTGTCGGTGAGATGGCCGCACAGTAG