ViewGene
Locus Name:
GeneID:
Location:

GeneID:1644
TrivialName: PA14_04550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04550
PAO1 Ortholog Locus:PA0347
Sequence Length:1152
Protein Length:383
Start: 405057
Stop: 403906
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03736.1|AE004472_8 (AE004472) glycerophosphoryl diester phosphodiesterase, periplasmic [Pseudomonas aeruginosa PAO1]
Identities = 380/383 (99%), Positives = 381/383 (99%)
Sequence:
ATGCAACCAGCCTTCCTGCGCCGCCACCTCGGCGCCGCCTGCCTGATGCTCGCCGCTGGCCTGGCCAGCGCC
GCCCACGCCGACACCGGCAACGTACAACGCGCCATCGACTGGGCCCAGGGCCAGGCCTCCGTTCGCCACCCG
GCCGGCCACGAACGCTCGCCTCTGGTCATCGCCCACCGTGGCGCCAGCGGTTACGTACCGGAACACACCCTG
GGCGCCTACGCCCTGGCGGTGATGATGGGCGCCGACTACGTCGAGCCGGACCTGGTGATGACCCGCGACGGC
AAGCTGGTCGCCCGCCACGACAACGAGCTGGGCCTGACCACCGATGTCGCCCAGCACCCGGAATTCGCCGAC
CGCAAGCGCACGCAGAAAGTCGACGGAGTGGAACTCACCGGCTGGTTCAGCGAAGACTTCACCCTCGCCGAA
CTGAAGACCCTGCGCGCCATCGAGCGCATCCCCACGATCCGCCCGGGCAATGCGCGCCTGGACGGCACCTTC
GAGATCCCCACCCTGCAGGAGATCATCGACCTGGTGAAAAGCCTGCAAATCAGCCAGCAACGCACCATCGGC
CTGTACCCCGAGATCAAGCACGGCACCCACTTCCAGCGCCTCGGCCTGGCCATGGAACGCCCGCTGGTGAAG
ACCCTGCACCGCAACGGCTACCTCGGTCCGCGCGCGCCGGTATTCATCCAGTCCTTCGAGGTGAACAACCTG
AAGGAACTCAAGCGCCTCACCGGCATCCGCCTGGTCCAGCTCTACGGCAGCGGCCAGCCCTACGACCAGCAG
GCCAGCGGCGGCAGCCTGACCTACGCCGAGATGGCCACCGCCAAGGGCCTGCGCCAGGTGGCGCGCTACGCC
TACGGGGTCGGTCCGGACAAGAGCTACGTGATTCCTCGCGATGCCAACGGCAACCTCGGCCAGCCGACCCGC
TTCGTCGGCGACGCCCACGCCGCCGGGCTGAAGGTGCATCCCTACACCTTCCGCGCGGAAAACAGCTTCCTT
CCGGCGGAGTTCCGCAGCGCCGACGGCAACCCGCAGTCGCGCGGCGACCTGGCCGGCGAGATCAGGGCCTAC
CTCGACGCCGGCATCGACGGCCTGTTCAGCGACCAGCCGGACGTCGCCGTGCGCCTGCGCGAGCAGCGCTGA
Translation:
MQPAFLRRHLGAACLMLAAGLASAAHADTGNVQRAIDWAQGQASVRHPAGHERSPLVIAHRGASGYVPEHTL
GAYALAVMMGADYVEPDLVMTRDGKLVARHDNELGLTTDVAQHPEFADRKRTQKVDGVELTGWFSEDFTLAE
LKTLRAIERIPTIRPGNARLDGTFEIPTLQEIIDLVKSLQISQQRTIGLYPEIKHGTHFQRLGLAMERPLVK
TLHRNGYLGPRAPVFIQSFEVNNLKELKRLTGIRLVQLYGSGQPYDQQASGGSLTYAEMATAKGLRQVARYA
YGVGPDKSYVIPRDANGNLGQPTRFVGDAHAAGLKVHPYTFRAENSFLPAEFRSADGNPQSRGDLAGEIRAY
LDAGIDGLFSDQPDVAVRLREQR*
AnnotationID:1653GeneID:1644
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:31
Gene Name:glpQ
Confidence Code:2
GeneProduct:glycerophosphoryl diester phosphodiesterase, periplasmic
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0584,pfam03009
Secondary Functional Category(ies):
EC Number:3.1.4.2
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB73008.1| (AP003584) glycerophosphoryl diester phosphodiesterase [Nostoc sp.
           PCC 7120]
          Length = 389

 Score =  363 bits (931), Expect = 1e-99
 Identities = 190/339 (56%), Positives = 233/339 (68%), Gaps = 22/339 (6%)

>emb|CAD14030.1| (AL646059) PUTATIVE GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE,
           PERIPLASMIC PRECURSOR PROTEIN [Ralstonia solanacearum]
          Length = 378

 Score =  320 bits (821), Expect = 7e-87
 Identities = 170/326 (52%), Positives = 216/326 (66%), Gaps = 7/326 (2%)








 
Structural Features:
COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase 
[Energy production and conversion]
CD-Length = 257 residues,  99.2% aligned
Score =  163 bits (412), Expect = 4e-41
Identities = 115/333 (34%), Positives = 148/333 (44%), Gaps = 79/333 (23%)

pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family.
CD-Length = 240 residues, 100.0% aligned
Score =  123 bits (311), Expect = 2e-29
Identities = 84/317 (26%), Positives = 118/317 (37%), Gaps = 78/317 (24%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3291




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20438




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33689




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1644_cdd.html


    		




 
URL:

















    ReferenceID:35412




  
Author/Investigator(s):
        Tommassen J, Eiglmeier K, Cole ST, Overduin P, Larson TJ, Boos W.





  
Title:
        Characterization of two genes, glpQ and ugpQ, encoding glycerophosphoryl diester phosphodiesterases of Escherichia coli.




  
PubMed:
        1851953


MedLine:
        




    
Source:
Mol Gen Genet. 1991 Apr;226(1-2):321-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1851953

















    ReferenceID:35413




  
Author/Investigator(s):
        Nilsson RP, Beijer L, Rutberg B.





  
Title:
        The glpT and glpQ genes of the glycerol regulon in Bacillus subtilis.




  
PubMed:
        8012593


MedLine:
        




    
Source:
Microbiology. 1994 Apr;140 ( Pt 4):723-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8012593









           
Homologs By Global Alignment 

           

       



     
Gene ID:1644
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2906
                           PA0347_tr
                           translation of PA0347
                           383
                           99.21
                           99.47
                           0
                           1963.0
     

     
     
90750
                           gb|AAG03736.1|AE004472_8
                           (AE004472) glycerophosphoryl diester phosphodiesterase, periplasmic [Pseudomonas aeruginosa PAO1]
                           383
                           99.21
                           99.47
                           0
                           1963.0
     

     
     
90754
                           gb|AAM43450.1|
                           (AE012551) glycerophosphoryl diester phosphodiesterase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           400
                           48.50
                           59.50
                           47
                           823.0
     

     
     
90751
                           dbj|BAB73008.1|
                           (AP003584) glycerophosphoryl diester phosphodiesterase [Nostoc sp. PCC 7120]
                           420
                           47.61
                           58.57
                           68
                           943.0
     

     
     
90755
                           gb|AAK25234.1|
                           (AE005990) glycerophosphoryl diester phosphodiesterase [Caulobacter crescentus CB15]
                           390
                           46.92
                           59.48
                           41
                           816.0
     

     






      

          
GC ORFID: 44646How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0347Glimmer Score: 

          
Start: 6206399Stop: 6205248

          
Length: 1152


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0347 translation of PA0347Homolog Bit Score 760.0

          
Other Homologs:  t_PA0347 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACCAGCCTTCCTGCGCCGCCACCTCGGCGCCGCCTGCCTGATGCTCGCCGCTGGCCTGGCCAGCGCC 
GCCCACGCCGACACCGGCAACGTACAACGCGCCATCGACTGGGCCCAGGGCCAGGCCTCCGTTCGCCACCCG 
GCCGGCCACGAACGCTCGCCTCTGGTCATCGCCCACCGTGGCGCCAGCGGTTACGTACCGGAACACACCCTG 
GGCGCCTACGCCCTGGCGGTGATGATGGGCGCCGACTACGTCGAGCCGGACCTGGTGATGACCCGCGACGGC 
AAGCTGGTCGCCCGCCACGACAACGAGCTGGGCCTGACCACCGATGTCGCCCAGCACCCGGAATTCGCCGAC 
CGCAAGCGCACGCAGAAAGTCGACGGAGTGGAACTCACCGGCTGGTTCAGCGAAGACTTCACCCTCGCCGAA 
CTGAAGACCCTGCGCGCCATCGAGCGCATCCCCACGATCCGCCCGGGCAATGCGCGCCTGGACGGCACCTTC 
GAGATCCCCACCCTGCAGGAGATCATCGACCTGGTGAAAAGCCTGCAAATCAGCCAGCAACGCACCATCGGC 
CTGTACCCCGAGATCAAGCACGGCACCCACTTCCAGCGCCTCGGCCTGGCCATGGAACGCCCGCTGGTGAAG 
ACCCTGCACCGCAACGGCTACCTCGGTCCGCGCGCGCCGGTATTCATCCAGTCCTTCGAGGTGAACAACCTG 
AAGGAACTCAAGCGCCTCACCGGCATCCGCCTGGTCCAGCTCTACGGCAGCGGCCAGCCCTACGACCAGCAG 
GCCAGCGGCGGCAGCCTGACCTACGCCGAGATGGCCACCGCCAAGGGCCTGCGCCAGGTGGCGCGCTACGCC 
TACGGGGTCGGTCCGGACAAGAGCTACGTGATTCCTCGCGATGCCAACGGCAACCTCGGCCAGCCGACCCGC 
TTCGTCGGCGACGCCCACGCCGCCGGGCTGAAGGTGCATCCCTACACCTTCCGCGCGGAAAACAGCTTCCTT 
CCGGCGGAGTTCCGCAGCGCCGACGGCAACCCGCAGTCGCGCGGCGACCTGGCCGGCGAGATCAGGGCCTAC 
CTCGACGCCGGCATCGACGGCCTGTTCAGCGACCAGCCGGACGTCGCCGTGCGCCTGCGCGAGCAGCGCTGA