ViewGene
Locus Name:
GeneID:
Location:

GeneID:1642
TrivialName: PA14_13580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13580
PAO1 Ortholog Locus:PA3891
Sequence Length:1164
Protein Length:387
Start: 1168780
Stop: 1167617
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07278.1|AE004806_5 (AE004806) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 385/387 (99%), Positives = 386/387 (99%)
Sequence:
ATGATCGAACTGGACAAGCTCAGCAAGACCTTCACCCAGAAGAACGGCAAGGAGTTCCGCGCCGTCGATTCC
GTCAGCCTGACCGTGGAGAAAGGCGAGATCTGCGTCTTCCTCGGCCCCTCCGGCTGCGGCAAGACCACCACC
CTGAAGATGATCAACCGGATCATCCCGCCGACCTCCGGCCGCGTGCTGATCGACGGCCAGGACACCGCGGAC
CTCGACGAAGTCACCCTGCGCCGCCACATCGGCTACGTGATCCAGCAGATCGGCCTGTTCCCGAACATGACC
ATCGAGGAAAACATCATGGTCGTGCCGCGCCTGCTCGGCTGGGACAAGGCGCGCTGCAAGGAGAAGGCCCGC
GAGCTGATGAGCATGGTCAAGCTGGAGCCCAAGCAGTACCTGCAACGCTACCCGCGCGAACTCTCCGGCGGC
CAGCAGCAGCGCGTCGGGGTGATCCGCGCGCTGGCGGCGGACGCGCCGCTGCTGCTGATGGACGAGCCGTTC
GGCGCGGTCGATCCGATCAACCGCGAGTCGATCCAGAACGAGTTCTTCGAGATGCAGCGCAAGCTCGGCATG
ACCGTGATCATGGTCAGCCACGACATCGACGAAGCCATCAAGCTGGGCGACAAGGTGGCGGTGTTCAAGAGC
GGCCGGCTGCTCCAGTACGACCACCCGGATACCCTGCTGGCGCACCCGGCGGACGAGTTCGTCAGCGCCTTC
ACCGGCCAGGACAGCACGCTCAAGCGCCTGCTCCTGGTGCGCGCCGAGGACGCCGCCGACAGCAGCCTGGTC
ACCGCCCGGCCGCAGACCCCGGTGGCCGAGGCGCTGGAACTGATGGACGAGAACGACCGGCGCTATCTGATC
GTGGTGGATGACCAGGGCAAGGGCCTGGGCTACGTGCGACGCAAGGACCTGCGCCGCCAGGAAGGCACCTGC
GAACCGTTCGTCACCCCGTTCCGGGTCACCGCCAGCCACGACGAGCACCTGCGCATCCTGTTGTCGCGGATG
TACGAGTTCAACAGCTCCTGGCTGCCGGTGCTCGACCCCGACCAGCAGTTCCTCGGCGAGGTCACCCAGGAG
TCCATCGCCGACTACCTCAGCTCCGGCCGCTCGCGCGGCGGCAGGGGCCTGATCGTGTCGCCGGCCGAACAG
GTCGGAGCCTAG
Translation:
MIELDKLSKTFTQKNGKEFRAVDSVSLTVEKGEICVFLGPSGCGKTTTLKMINRIIPPTSGRVLIDGQDTAD
LDEVTLRRHIGYVIQQIGLFPNMTIEENIMVVPRLLGWDKARCKEKARELMSMVKLEPKQYLQRYPRELSGG
QQQRVGVIRALAADAPLLLMDEPFGAVDPINRESIQNEFFEMQRKLGMTVIMVSHDIDEAIKLGDKVAVFKS
GRLLQYDHPDTLLAHPADEFVSAFTGQDSTLKRLLLVRAEDAADSSLVTARPQTPVAEALELMDENDRRYLI
VVDDQGKGLGYVRRKDLRRQEGTCEPFVTPFRVTASHDEHLRILLSRMYEFNSSWLPVLDPDQQFLGEVTQE
SIADYLSSGRSRGGRGLIVSPAEQVGA*
AnnotationID:1651GeneID:1642
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 19:07:57
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type proline/glycine betaine transpor
Cell Localization:()
Synonyms:PA3891
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1125,COG4175
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58021.1| (AE016872) glycine betaine/carnitine/choline ABC transporter,
           ATP-binding protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 385

 Score =  612 bits (1579), Expect = e-175
 Identities = 305/387 (78%), Positives = 345/387 (89%), Gaps = 2/387 (0%)

>gb|AAK65458.1| (AE007266) Probable ABC transporter ATP binding protein
           [Sinorhizobium meliloti]
          Length = 371

 Score =  362 bits (928), Expect = 3e-99
 Identities = 186/369 (50%), Positives = 248/369 (67%), Gaps = 1/369 (0%)






 
Structural Features:
COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, 
ATPase components 
[Amino acid transport and metabolism]
CD-Length = 309 residues, 100.0% aligned
Score =  404 bits (1040), Expect = 2e-113
Identities = 172/367 (46%), Positives = 223/367 (60%), Gaps = 59/367 (16%)

COG4175, ProV, ABC-type proline/glycine betaine transport system, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 386 residues,  88.6% aligned
Score =  259 bits (663), Expect = 9e-70
Identities = 124/354 (35%), Positives = 198/354 (55%), Gaps = 18/354 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3287




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20434




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31675




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1642_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1642
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2901
                           PA3891_tr
                           translation of PA3891
                           387
                           99.48
                           99.74
                           0
                           1963.0
     

     
     
90446
                           gb|AAG07278.1|AE004806_5
                           (AE004806) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           387
                           99.48
                           99.74
                           0
                           1963.0
     

     
     
90448
                           gb|AAN66493.1|AE016278_4
                           (AE016777) glycine betaine/carnitine/choline ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           387
                           78.81
                           88.11
                           2
                           1575.0
     

     
     
90447
                           gb|AAO58021.1|
                           (AE016872) glycine betaine/carnitine/choline ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           387
                           78.81
                           89.14
                           2
                           1583.0
     

     
     
90449
                           gb|AAL20410.1|
                           (AE008765) ABC-type proline/glycine betaine transport systems [Salmonella typhimurium LT2]
                           388
                           61.59
                           79.63
                           7
                           1273.0
     

     






      

          
GC ORFID: 44644How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3891Glimmer Score: 

          
Start: 3785158Stop: 3786321

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3891 translation of PA3891Homolog Bit Score 760.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5423 (ORF: BLASTX 606.0), t_PA0603 (ORF: BLASTX 174.0), t_PA3891 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAACTGGACAAGCTCAGCAAGACCTTCACCCAGAAGAACGGCAAGGAGTTCCGCGCCGTCGATTCC 
GTCAGCCTGACCGTGGAGAAAGGCGAGATCTGCGTCTTCCTCGGCCCCTCCGGCTGCGGCAAGACCACCACC 
CTGAAGATGATCAACCGGATCATCCCGCCGACCTCCGGCCGCGTGCTGATCGACGGCCAGGACACCGCGGAC 
CTCGACGAAGTCACCCTGCGCCGCCACATCGGCTACGTGATCCAGCAGATCGGCCTGTTCCCGAACATGACC 
ATCGAGGAAAACATCATGGTCGTGCCGCGCCTGCTCGGCTGGGACAAGGCGCGCTGCAAGGAGAAGGCCCGC 
GAGCTGATGAGCATGGTCAAGCTGGAGCCCAAGCAGTACCTGCAACGCTACCCGCGCGAACTCTCCGGCGGC 
CAGCAGCAGCGCGTCGGGGTGATCCGCGCGCTGGCGGCGGACGCGCCGCTGCTGCTGATGGACGAGCCGTTC 
GGCGCGGTCGATCCGATCAACCGCGAGTCGATCCAGAACGAGTTCTTCGAGATGCAGCGCAAGCTCGGCATG 
ACCGTGATCATGGTCAGCCACGACATCGACGAAGCCATCAAGCTGGGCGACAAGGTGGCGGTGTTCAAGAGC 
GGCCGGCTGCTCCAGTACGACCACCCGGATACCCTGCTGGCGCACCCGGCGGACGAGTTCGTCAGCGCCTTC 
ACCGGCCAGGACAGCACGCTCAAGCGCCTGCTCCTGGTGCGCGCCGAGGACGCCGCCGACAGCAGCCTGGTC 
ACCGCCCGGCCGCAGACCCCGGTGGCCGAGGCGCTGGAACTGATGGACGAGAACGACCGGCGCTATCTGATC 
GTGGTGGATGACCAGGGCAAGGGCCTGGGCTACGTGCGACGCAAGGACCTGCGCCGCCAGGAAGGCACCTGC 
GAACCGTTCGTCACCCCGTTCCGGGTCACCGCCAGCCACGACGAGCACCTGCGCATCCTGTTGTCGCGGATG 
TACGAGTTCAACAGCTCCTGGCTGCCGGTGCTCGACCCCGACCAGCAGTTCCTCGGCGAGGTCACCCAGGAG 
TCCATCGCCGACTACCTCAGCTCCGGCCGCTCGCGCGGCGGCAGGGGCCTGATCGTGTCGCCGGCCGAACAG 
GTCGGAGCCTAG