ViewGene
Locus Name:
GeneID:
Location:

GeneID:1641
TrivialName: PA14_30500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30500
PAO1 Ortholog Locus:PA2597
Sequence Length:1152
Protein Length:383
Start: 2641114
Stop: 2642265
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05985.1|AE004688_7 (AE004688) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 379/383 (98%), Positives = 380/383 (99%)
Sequence:
ATGGCCGTCCTGCAGACTCCCTCGGCGGCGTTCGACGAATGGCTGCCGGAACTGACCCGGCAACTGGCGGAA
AGCGCCGATGCCCATGACCGCAGCGGAGATTTTCCCCATGCCAACCTGGCCCTGCTGCGACACCACGGGCTG
CTCGCCCTAGCCTTGCCGCCTGCGCTCGGCGGTCCCGGCGCCAGCCTCGGCGAGCTGCGCAGGGTAATCGGC
GCGGTGGCTCGCGGCGAACCCTCCACGGCCCTGGTGCTGTGCATGCAGTACCTGCATTTGCGGCGCCTGGCC
GATAACCCCGATTGGCCCGGCGCGCTCAAGCGGCGCGTGGCGCGCGAGGTGCTGGAGCAGGGGGCGTTGATC
AATAGCCTGCGCGTGGAGCCCGAGCTGGGTTCGCCGTCACGCGGCGGTCTGCCGGGTACGCTGGCGCGGCGT
GTCGGCGACGGCTGGCGGCTGTCCGGGCACAAGCTCTACACCACCGGCATTCCCGGGCTGACCTGGCTGGCG
GTATGGGCGTGCAGCGACGAGCCGATCCCACGCGTGGGTACCTGGCTGGTGCGCCGCGACAGCCCAGGCATC
CGTATCGTGGAGAGCTGGGACCATCTGGGCATGCGCGCCAGCGGCAGCCACGAGGTGCTCTTCGAAGAGGTG
GCGGTGCCTCTGGAAAACGCCATCGGCCTGCATCCCCACGACCAGCCTCCGGCGCCGGACCAGGCCGTGCTG
CGCGACTTCGCCCAGGCTAGCGCGGTGTTGCTTGGCGCTCTCTACGACGGTATCGCCGGGAGCGCCCGCGAG
TGGCTCGTCGGCTGGCTGCGCGAGCGCGTGCCGGCCAGTCTCGGCGCGCCGTTGGCGAGCCTGCCGAGGATG
CAGGAGGCGCTCGGCGAGATCGACGGCCTGCTCCTGCAGAACCGCCTGCTGCTCGATGCCGCGTGCTGCGGA
CAGTTGCCCGCCAGCGACTCCGGGCTGCTCAAGGTCGCGGTCATCGACAACGCGTTGGCAGTGGTCGAGAAG
GCCCTGGAACTGAGCGGCAACCACGGCCTCAGCCGGCACAATCCGCTACAGCGGCACTACCGCGACGTGCTT
TGCGGACGTGTCCACACGCCACAGAAAGATAGCGTCTGGAGCGCGGCGGGGAGGGCGGCACTGAGTCTTTGA
Translation:
MAVLQTPSAAFDEWLPELTRQLAESADAHDRSGDFPHANLALLRHHGLLALALPPALGGPGASLGELRRVIG
AVARGEPSTALVLCMQYLHLRRLADNPDWPGALKRRVAREVLEQGALINSLRVEPELGSPSRGGLPGTLARR
VGDGWRLSGHKLYTTGIPGLTWLAVWACSDEPIPRVGTWLVRRDSPGIRIVESWDHLGMRASGSHEVLFEEV
AVPLENAIGLHPHDQPPAPDQAVLRDFAQASAVLLGALYDGIAGSAREWLVGWLRERVPASLGAPLASLPRM
QEALGEIDGLLLQNRLLLDAACCGQLPASDSGLLKVAVIDNALAVVEKALELSGNHGLSRHNPLQRHYRDVL
CGRVHTPQKDSVWSAAGRAALSL*
AnnotationID:1650GeneID:1641
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:38
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA2597
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00567,cd01163,cd01158
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55310.1| (AE016862) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 397

 Score =  421 bits (1081), Expect = e-117
 Identities = 213/381 (55%), Positives = 272/381 (71%), Gaps = 7/381 (1%)

>gb|AAN68833.1|AE016516_3 (AE016786) acyl-CoA dehydrogenase-related protein [Pseudomonas
           putida KT2440]
          Length = 380

 Score =  405 bits (1041), Expect = e-112
 Identities = 208/382 (54%), Positives = 264/382 (69%), Gaps = 6/382 (1%)

>dbj|BAC51717.1| (AP005958) acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA
           110]
          Length = 390

 Score =  373 bits (957), Expect = e-102
 Identities = 193/371 (52%), Positives = 250/371 (67%), Gaps = 9/371 (2%)






 
Structural Features:
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  94.3% aligned
Score =  155 bits (392), Expect = 1e-38

cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C (DszC).
CD-Length = 377 residues,  93.6% aligned
Score =  126 bits (318), Expect = 5e-30

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  89.8% aligned
Score =  123 bits (309), Expect = 5e-29






   
Genomic Context:






   
Comment:


















    ReferenceID:3285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20432




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33167




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1641_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1641
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2900
                           PA2597_tr
                           translation of PA2597
                           383
                           98.95
                           99.21
                           0
                           1963.0
     

     
     
90441
                           gb|AAG05985.1|AE004688_7
                           (AE004688) hypothetical protein PA2597 [Pseudomonas aeruginosa PAO1]
                           383
                           98.95
                           99.21
                           0
                           1963.0
     

     
     
90443
                           gb|AAN68833.1|AE016516_3
                           (AE016786) acyl-CoA dehydrogenase-related protein [Pseudomonas putida KT2440]
                           388
                           53.86
                           68.55
                           13
                           1046.0
     

     
     
90442
                           gb|AAO55310.1|
                           (AE016862) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           401
                           53.11
                           67.83
                           22
                           1083.0
     

     
     
90444
                           dbj|BAC51717.1|
                           (AP005958) acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110]
                           402
                           49.25
                           64.17
                           31
                           958.0
     

     






      

          
GC ORFID: 44643How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2597Glimmer Score: 

          
Start: 2312812Stop: 2311661

          
Length: 1152


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2597 translation of PA2597Homolog Bit Score 760.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7658 (ORF: BLASTX 419.0), t_PA2597 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGTCCTGCAGACTCCCTCGGCGGCGTTCGACGAATGGCTGCCGGAACTGACCCGGCAACTGGCGGAA 
AGCGCCGATGCCCATGACCGCAGCGGAGATTTTCCCCATGCCAACCTGGCCCTGCTGCGACACCACGGGCTG 
CTCGCCCTAGCCTTGCCGCCTGCGCTCGGCGGTCCCGGCGCCAGCCTCGGCGAGCTGCGCAGGGTAATCGGC 
GCGGTGGCTCGCGGCGAACCCTCCACGGCCCTGGTGCTGTGCATGCAGTACCTGCATTTGCGGCGCCTGGCC 
GATAACCCCGATTGGCCCGGCGCGCTCAAGCGGCGCGTGGCGCGCGAGGTGCTGGAGCAGGGGGCGTTGATC 
AATAGCCTGCGCGTGGAGCCCGAGCTGGGTTCGCCGTCACGCGGCGGTCTGCCGGGTACGCTGGCGCGGCGT 
GTCGGCGACGGCTGGCGGCTGTCCGGGCACAAGCTCTACACCACCGGCATTCCCGGGCTGACCTGGCTGGCG 
GTATGGGCGTGCAGCGACGAGCCGATCCCACGCGTGGGTACCTGGCTGGTGCGCCGCGACAGCCCAGGCATC 
CGTATCGTGGAGAGCTGGGACCATCTGGGCATGCGCGCCAGCGGCAGCCACGAGGTGCTCTTCGAAGAGGTG 
GCGGTGCCTCTGGAAAACGCCATCGGCCTGCATCCCCACGACCAGCCTCCGGCGCCGGACCAGGCCGTGCTG 
CGCGACTTCGCCCAGGCTAGCGCGGTGTTGCTTGGCGCTCTCTACGACGGTATCGCCGGGAGCGCCCGCGAG 
TGGCTCGTCGGCTGGCTGCGCGAGCGCGTGCCGGCCAGTCTCGGCGCGCCGTTGGCGAGCCTGCCGAGGATG 
CAGGAGGCGCTCGGCGAGATCGACGGCCTGCTCCTGCAGAACCGCCTGCTGCTCGATGCCGCGTGCTGCGGA 
CAGTTGCCCGCCAGCGACTCCGGGCTGCTCAAGGTCGCGGTCATCGACAACGCGTTGGCAGTGGTCGAGAAG 
GCCCTGGAACTGAGCGGCAACCACGGCCTCAGCCGGCACAATCCGCTACAGCGGCACTACCGCGACGTGCTT 
TGCGGACGTGTCCACACGCCACAGAAAGATAGCGTCTGGAGCGCGGCGGGGAGGGCGGCACTGAGTCTTTGA