ViewGene
Locus Name:
GeneID:
Location:

GeneID:1640
TrivialName: PA14_34230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34230
PAO1 Ortholog Locus:PA2353
Sequence Length:1155
Protein Length:384
Start: 3043554
Stop: 3044708
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05741.1|AE004661_8 (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 374/384 (97%), Positives = 374/384 (97%)
Sequence:
ATGCCCGATACCTCTCCCGATCTGCCGGCCATGTCGCCGCTCGCCGCCTATCGTCAGGCCGTGGAACAGCGC
GGTTTCGCTCCCGACGAGGCGCAGCGGCGCGCCGCCGAGGCGCTGGAGCGTTGTTTCCAGGCCCTGCACGAG
CCGCACCGCCACGGCGCGATCCAGGGCGTCTACCTGTGGGGACCGGTAGGACGCGGCAAGACCTGGCTGATG
GATCACTTCTACCAGTGCCTGCGCGTGCCCGCGCGGCGCCAGCACTTCCACCACTTCATGCAATGGGTGCAC
CAGCGCCAGTTCGAACTGACCGGTACAGCCGACCCGTTGCGCGCCCTGGCCCGCGAGTTGGCGCGGGACGTG
CGGGTGCTGTGCTTCGACGAGCTGTTCGTCAGCGATATCGGCGACGCCATCCTGCTCGGCAGCCTGCTGCGC
ATCATGTTCGAGGAGGGCGTGGTGCTGGTCGCCACTTCCAATCAGCCGCCGGAGCAGTTGTACGCCGACGGC
TTCAACCGCGAACGCTTCCTCCCGGCGATCGAGGCGATCCAGCGGCACATGACGGTGGTCGCGGTGGATGGC
GACCAGGACCACCGCCTGCATCCCGGCCGGGCCGAGCAACGCTACTGGGTGGTGGAGGCGGGGCAGGCGGGC
GGTTTCGCCGAACTCTTCGCGCGCCTGAGCGCCGGCGAAGTGGTGTCCGCGCAGCCCATCGAGCTGGGGCAC
CGCCCGCTGGCGGTGCGCCGGCACAGCGAGTCGGTGCTCTGGTGCAGCTATGCGCAGCTCTGCGAGGTACCG
CTGTCGGCGCTGGACTTCATCGGCCTTTGCGACCGCTACCGGGCGATCCTGATGGACGACCTGCCGTGCCTG
AGCGCCAGCCAGCGCGAAGGCCGCATAGCCCGTGGCACCGAGGACGGCGCGCAACTGGTGGAGGCGGGGGAT
CGCGAATTGCCGCAGTTGTCGGTGCACGACGACGGCGTGCGGCGCTTCATCGCCCTGGTGGACGAATGCTAC
GACCGCAAGGTGCCGCTCTACCTGGAGGCCAGGGTACCGTTGGAGGCACTTTATACCGAGGGCTACCTGGCC
TTCGCCTTCCGTCGCACCCTCAGCCGGCTGCGCGAGATGCAGTTGGCGCGCTTCGGCAGCGACAGCGCCGGC
TAG
Translation:
MPDTSPDLPAMSPLAAYRQAVEQRGFAPDEAQRRAAEALERCFQALHEPHRHGAIQGVYLWGPVGRGKTWLM
DHFYQCLRVPARRQHFHHFMQWVHQRQFELTGTADPLRALARELARDVRVLCFDELFVSDIGDAILLGSLLR
IMFEEGVVLVATSNQPPEQLYADGFNRERFLPAIEAIQRHMTVVAVDGDQDHRLHPGRAEQRYWVVEAGQAG
GFAELFARLSAGEVVSAQPIELGHRPLAVRRHSESVLWCSYAQLCEVPLSALDFIGLCDRYRAILMDDLPCL
SASQREGRIARGTEDGAQLVEAGDRELPQLSVHDDGVRRFIALVDECYDRKVPLYLEARVPLEALYTEGYLA
FAFRRTLSRLREMQLARFGSDSAG*
AnnotationID:1649GeneID:1640
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:27
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase
Cell Localization:()
Synonyms:PA2353
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1485,pfam03969
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57066.1| (AE016868) ATPase, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 371

 Score =  510 bits (1313), Expect = e-144
 Identities = 243/371 (65%), Positives = 297/371 (80%), Gaps = 3/371 (0%)








 
Structural Features:
COG1485, COG1485, Predicted ATPase
CD-Length = 367 residues,  98.9% aligned
Score =  408 bits (1050), Expect = 6e-115
Identities = 170/394 (43%), Positives = 208/394 (52%), Gaps = 45/394 (11%)

pfam03969, AFG1_ATPase, AFG1-like ATPase
CD-Length = 360 residues,  97.8% aligned
Score =  282 bits (724), Expect = 3e-77
Identities = 149/381 (39%), Positives = 195/381 (51%), Gaps = 46/381 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3283




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20430




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32901




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1640_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1640
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2899
                           PA2353_tr
                           translation of PA2353
                           384
                           97.39
                           97.39
                           0
                           1962.0
     

     
     
90436
                           gb|AAG05741.1|AE004661_8
                           (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           384
                           97.39
                           97.39
                           0
                           1962.0
     

     
     
90437
                           gb|AAO57066.1|
                           (AE016868) ATPase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           384
                           63.28
                           77.34
                           13
                           1315.0
     

     
     
90438
                           gb|AAN67812.1|AE016412_5
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           384
                           63.28
                           75.26
                           16
                           1304.0
     

     
     
90439
                           gb|AAN56737.1|AE015809_4
                           (AE015809) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           408
                           37.74
                           50.73
                           71
                           648.0
     

     






      

          
GC ORFID: 44642How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2353Glimmer Score: 

          
Start: 1910362Stop: 1909208

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2353 translation of PA2353Homolog Bit Score 760.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene7988 (ORF: BLASTX 508.0), t_PA2353 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGATACCTCTCCCGATCTGCCGGCCATGTCGCCGCTCGCCGCCTATCGTCAGGCCGTGGAACAGCGC 
GGTTTCGCTCCCGACGAGGCGCAGCGGCGCGCCGCCGAGGCGCTGGAGCGTTGTTTCCAGGCCCTGCACGAG 
CCGCACCGCCACGGCGCGATCCAGGGCGTCTACCTGTGGGGACCGGTAGGACGCGGCAAGACCTGGCTGATG 
GATCACTTCTACCAGTGCCTGCGCGTGCCCGCGCGGCGCCAGCACTTCCACCACTTCATGCAATGGGTGCAC 
CAGCGCCAGTTCGAACTGACCGGTACAGCCGACCCGTTGCGCGCCCTGGCCCGCGAGTTGGCGCGGGACGTG 
CGGGTGCTGTGCTTCGACGAGCTGTTCGTCAGCGATATCGGCGACGCCATCCTGCTCGGCAGCCTGCTGCGC 
ATCATGTTCGAGGAGGGCGTGGTGCTGGTCGCCACTTCCAATCAGCCGCCGGAGCAGTTGTACGCCGACGGC 
TTCAACCGCGAACGCTTCCTCCCGGCGATCGAGGCGATCCAGCGGCACATGACGGTGGTCGCGGTGGATGGC 
GACCAGGACCACCGCCTGCATCCCGGCCGGGCCGAGCAACGCTACTGGGTGGTGGAGGCGGGGCAGGCGGGC 
GGTTTCGCCGAACTCTTCGCGCGCCTGAGCGCCGGCGAAGTGGTGTCCGCGCAGCCCATCGAGCTGGGGCAC 
CGCCCGCTGGCGGTGCGCCGGCACAGCGAGTCGGTGCTCTGGTGCAGCTATGCGCAGCTCTGCGAGGTACCG 
CTGTCGGCGCTGGACTTCATCGGCCTTTGCGACCGCTACCGGGCGATCCTGATGGACGACCTGCCGTGCCTG 
AGCGCCAGCCAGCGCGAAGGCCGCATAGCCCGTGGCACCGAGGACGGCGCGCAACTGGTGGAGGCGGGGGAT 
CGCGAATTGCCGCAGTTGTCGGTGCACGACGACGGCGTGCGGCGCTTCATCGCCCTGGTGGACGAATGCTAC 
GACCGCAAGGTGCCGCTCTACCTGGAGGCCAGGGTACCGTTGGAGGCACTTTATACCGAGGGCTACCTGGCC 
TTCGCCTTCCGTCGCACCCTCAGCCGGCTGCGCGAGATGCAGTTGGCGCGCTTCGGCAGCGACAGCGCCGGC 
TAG