ViewGene

Locus Name:
GeneID:
Location:

GeneID: 164

TrivialName: PA14_40040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40040

PAO1 Ortholog Locus: PA1893

Sequence Length: 2430

Protein Length: 809

Start: 3567590

Stop: 3570019

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05282.1|AE004615_5 (AE004615) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 796/809 (98%), Positives = 801/809 (99%)

Sequence:

ATGTCGAAGAACGCACGTTACGCCTGGCGCCTGTCCCTCGGCGGCCTGCTGCTGGGGCTACTGGCCTGCGCG
GTCTACCTGCTGGCCGTCCCGCTGGGCTTCAAGTACGGCGAGATCCAGGTCGGCCATGGCCTGGAACACGAG
GGGCGGATCGCCTGGGACGCCGCCGGCGTCCCGCATATCCGCGCGCAGAACCTGGAGGACGGCTATTTCCTG
CTCGGCTACAGCCACGCCAGGGATCGCCTGTGGCAGATGGAGTTCGCCCGCCGCTATGCCGGCGGGACGCTC
TCCGAAGTGTTCGGCGCCAAGACCCTGCCGATGGACAGGTTCGCCCGCACCCTGGGCTTCCGACGCACCGCC
GAGGGCATCTACGCCAACCTGGACGCGCCCACGCGCGTCCTGCTGCAACGCTACAGCGCCGGGATCAACGCC
TACCTGGAGCGGGCCCCGGCGGCGCTGCCACTGGAATTCAGCCTGGTGCGCCACGAACGGCCGGGGCCTTGG
GGGCCGGTGGACAGCCTGTCCCTGCACCTGCTCTATTCCTGGACCCTGAGCGCCAACCTGGGCATGCAGTTG
CAGCGCCTGGCGCTGGCCGAGCACCTGGACCTGGCGCGGATCAACGAGGTGTTCGCCCCCTATCCGGGCGAG
CGGCCGCCGGCCACCCGCGACTACGCCAGCCTGTACCGCTCCCTGCGCGGCACGCCGGACGCCGGCAAGCTG
CTGGGGCAACTGCCCGGTTCCAACGTCGAAGGCATCGGTTCGAACAACTGGGTGGTCTCCGCCAACCGCAGC
GCCACCGGCAAGCCGCTGCTGGCCAACGATCCGCACCTGCGCCTGACCAACCCGGCGGCCTTCTACCTGGCC
AGCCTGAAGATCCCCGGCCTGAGCCTCACCGGCGCCAACTTCGCCGGCGCCCCGCTGTTCGTCATCGGCCAT
AACCAGCGCATCGCCTGGGGCTACACCAATACCGGCTCGCACATCCAGGACGCCTACCTGGAGCGCGTCGAT
CCCCAGGACCCGCGGCGCTACCTGACCCCGGACGGCTACCGGCCCTTCGAGACGCGCCTGGAACGCATCGCC
GTGCGCGACGGCGAGACGGTCTCGCTGGAGGTCCGCAGCACCCGCCACGGCCCGGTGATCAGCGACATCTAC
GAACCGGCGCGGCTGCCGCAGGCGCAGCGCGACCGGCTGGTGATCGCCCTCGCCTGGACCGGCCTCGACCTT
CACGACAAGACCTTCCCGAGCCTGCTGGCGATCAACCGGGCCGAAGGCTGGGAACAGTTCCTCGACGCCGCC
GCCGACTTCGGCGTACCGCCGCAGAACATGGTCTATGCCGACGTCGAGGGCAACATCGGCTACGTCTCCGCC
GGTCGCGTACCGCTCCGCGGCGCCGACGACGACCTCCATGGCCTGGCCCCCTCGCCCGGCTGGGAGAGCCGC
TACGACTGGGTCGGCTACGTTCCGGAAAGCGCCAAGCCACGCAGCCTCAACCCGCGCGAAGGGTTCATCGCC
ACGGCGAACCAGCGCATCGTGCCGCCCGACAATGCCTTCGACTTCGGCCACGACTGGGTCCTGCCCTACCGC
TACGACCGCATCCGCGAGTGGCTCGGCGGCCCCGGCCAGCGCACCCTGGAAGACAGCCTGGAGTTGCAGAAC
GACGAGTTCTCCAGCGTGATGGCGAGCCTGTTGCCGAAGATGCTGGAGCAGGTCAGCGACCCCGAACTGCGC
GCCAGCGAGGCCTTCGCCCTGCTCCAGGGCTGGAACCACCAGGCCGCCGCCGAGCTGGCCGCGCCACTGGTC
GCCGGCTACTGGGTACGCGCCTTCACCCGCGAGCTGCTGCAACCGAGGATCGGCACGCAGTTGCTGGCCAGC
GGCTGGAACCAGCGCAACTACGACGGATTCCTCCGGCTGATCCTCGACGGCCAGGCCGACCTGCGCTTCTGG
TGCGGCCAGGAACAAGGCTGCGACCTCAAGCTGAACCAGTCGCTGCGCAGCGCCCTCGACGAACTGCGAGCC
GCCCACGGAAGCGCGCCGGACGGCTGGAAGTGGGGCGAGGCGCACGCCGCCCTCGCCGAGCACGTGCCCTTC
CACAAGACCCCGTTGCGCACGCTGTTCGACCTGAAGAACAACAAGGGCGGCGACAACTTCAGCGTCAACGTC
GGGCGCTTCGACTACAGCGACCCGGCCAACCCGTTCAACACCCGGATCGCCGCGACCCTGCGGATGGTCATC
GACCTGGCGGACTTCGACAACTCGCGCTACGCGCTGTCCACCCGCAACTCCGGCCTGCCGTTCGACGGCGCC
ACCGACCTCAACGAACTCTGGGCCCGCGGCGCGTACATCCGTATCGCCGACGACGCCCCCGACGCGACGGAC
CGCCAGTTGGTCCTGCGCCCTTCAGCCCCTTCCTCCGGCGAGCCACGACCATGA

Translation:

MSKNARYAWRLSLGGLLLGLLACAVYLLAVPLGFKYGEIQVGHGLEHEGRIAWDAAGVPHIRAQNLEDGYFL
LGYSHARDRLWQMEFARRYAGGTLSEVFGAKTLPMDRFARTLGFRRTAEGIYANLDAPTRVLLQRYSAGINA
YLERAPAALPLEFSLVRHERPGPWGPVDSLSLHLLYSWTLSANLGMQLQRLALAEHLDLARINEVFAPYPGE
RPPATRDYASLYRSLRGTPDAGKLLGQLPGSNVEGIGSNNWVVSANRSATGKPLLANDPHLRLTNPAAFYLA
SLKIPGLSLTGANFAGAPLFVIGHNQRIAWGYTNTGSHIQDAYLERVDPQDPRRYLTPDGYRPFETRLERIA
VRDGETVSLEVRSTRHGPVISDIYEPARLPQAQRDRLVIALAWTGLDLHDKTFPSLLAINRAEGWEQFLDAA
ADFGVPPQNMVYADVEGNIGYVSAGRVPLRGADDDLHGLAPSPGWESRYDWVGYVPESAKPRSLNPREGFIA
TANQRIVPPDNAFDFGHDWVLPYRYDRIREWLGGPGQRTLEDSLELQNDEFSSVMASLLPKMLEQVSDPELR
ASEAFALLQGWNHQAAAELAAPLVAGYWVRAFTRELLQPRIGTQLLASGWNQRNYDGFLRLILDGQADLRFW
CGQEQGCDLKLNQSLRSALDELRAAHGSAPDGWKWGEAHAALAEHVPFHKTPLRTLFDLKNNKGGDNFSVNV
GRFDYSDPANPFNTRIAATLRMVIDLADFDNSRYALSTRNSGLPFDGATDLNELWARGAYIRIADDAPDATD
RQLVLRPSAPSSGEPRP*

AnnotationID:174 GeneID:164

AnnotatorUID: diggins

Modification Date/Time: 2005-06-05 10:10:02

Gene Name:

Confidence Code: 3

GeneProduct: putative penicillin acylase

Cell Localization: ()

Synonyms: PA1893

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (8) Central intermediary metabolism

Alternate Gene Product Name: putative penicillin amidase

Functional Category Confidence Code: 5

COGs: pfam01804

Secondary Functional Category(ies): putative enzyme

EC Number: 3.5.1.11

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam01804, Penicil_amidase, Penicillin amidase.
CD-Length = 734 residues,  99.9% aligned
Score =  649 bits (1676), Expect = 0.0
Identities = 294/754 (38%), Positives = 380/754 (50%), Gaps = 25/754 (3%)

Genomic Context:

Comment:

ReferenceID:331

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17473

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37035

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 164_cdd.html

URL:

Homologs By Global Alignment

Gene ID:164

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

298 PA1893_tr translation of PA1893 809 98.39 99.01 0 4219.0

19191 gb|AAG05282.1|AE004615_5 (AE004615) hypothetical protein PA1893 [Pseudomonas aeruginosa PAO1] 809 98.39 99.01 0 4219.0

GC ORFID: `43166`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1893`	Glimmer Score:
Start: `1386320`	Stop: `1383891`
Length: `2430`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1893 translation of PA1893`	Homolog Bit Score `1629.0`
Other Homologs: `t_PA1893 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCGAAGAACGCACGTTACGCCTGGCGCCTGTCCCTCGGCGGCCTGCTGCTGGGGCTACTGGCCTGCGCG GTCTACCTGCTGGCCGTCCCGCTGGGCTTCAAGTACGGCGAGATCCAGGTCGGCCATGGCCTGGAACACGAG GGGCGGATCGCCTGGGACGCCGCCGGCGTCCCGCATATCCGCGCGCAGAACCTGGAGGACGGCTATTTCCTG CTCGGCTACAGCCACGCCAGGGATCGCCTGTGGCAGATGGAGTTCGCCCGCCGCTATGCCGGCGGGACGCTC TCCGAAGTGTTCGGCGCCAAGACCCTGCCGATGGACAGGTTCGCCCGCACCCTGGGCTTCCGACGCACCGCC GAGGGCATCTACGCCAACCTGGACGCGCCCACGCGCGTCCTGCTGCAACGCTACAGCGCCGGGATCAACGCC TACCTGGAGCGGGCCCCGGCGGCGCTGCCACTGGAATTCAGCCTGGTGCGCCACGAACGGCCGGGGCCTTGG GGGCCGGTGGACAGCCTGTCCCTGCACCTGCTCTATTCCTGGACCCTGAGCGCCAACCTGGGCATGCAGTTG CAGCGCCTGGCGCTGGCCGAGCACCTGGACCTGGCGCGGATCAACGAGGTGTTCGCCCCCTATCCGGGCGAG CGGCCGCCGGCCACCCGCGACTACGCCAGCCTGTACCGCTCCCTGCGCGGCACGCCGGACGCCGGCAAGCTG CTGGGGCAACTGCCCGGTTCCAACGTCGAAGGCATCGGTTCGAACAACTGGGTGGTCTCCGCCAACCGCAGC GCCACCGGCAAGCCGCTGCTGGCCAACGATCCGCACCTGCGCCTGACCAACCCGGCGGCCTTCTACCTGGCC AGCCTGAAGATCCCCGGCCTGAGCCTCACCGGCGCCAACTTCGCCGGCGCCCCGCTGTTCGTCATCGGCCAT AACCAGCGCATCGCCTGGGGCTACACCAATACCGGCTCGCACATCCAGGACGCCTACCTGGAGCGCGTCGAT CCCCAGGACCCGCGGCGCTACCTGACCCCGGACGGCTACCGGCCCTTCGAGACGCGCCTGGAACGCATCGCC GTGCGCGACGGCGAGACGGTCTCGCTGGAGGTCCGCAGCACCCGCCACGGCCCGGTGATCAGCGACATCTAC GAACCGGCGCGGCTGCCGCAGGCGCAGCGCGACCGGCTGGTGATCGCCCTCGCCTGGACCGGCCTCGACCTT CACGACAAGACCTTCCCGAGCCTGCTGGCGATCAACCGGGCCGAAGGCTGGGAACAGTTCCTCGACGCCGCC GCCGACTTCGGCGTACCGCCGCAGAACATGGTCTATGCCGACGTCGAGGGCAACATCGGCTACGTCTCCGCC GGTCGCGTACCGCTCCGCGGCGCCGACGACGACCTCCATGGCCTGGCCCCCTCGCCCGGCTGGGAGAGCCGC TACGACTGGGTCGGCTACGTTCCGGAAAGCGCCAAGCCACGCAGCCTCAACCCGCGCGAAGGGTTCATCGCC ACGGCGAACCAGCGCATCGTGCCGCCCGACAATGCCTTCGACTTCGGCCACGACTGGGTCCTGCCCTACCGC TACGACCGCATCCGCGAGTGGCTCGGCGGCCCCGGCCAGCGCACCCTGGAAGACAGCCTGGAGTTGCAGAAC GACGAGTTCTCCAGCGTGATGGCGAGCCTGTTGCCGAAGATGCTGGAGCAGGTCAGCGACCCCGAACTGCGC GCCAGCGAGGCCTTCGCCCTGCTCCAGGGCTGGAACCACCAGGCCGCCGCCGAGCTGGCCGCGCCACTGGTC GCCGGCTACTGGGTACGCGCCTTCACCCGCGAGCTGCTGCAACCGAGGATCGGCACGCAGTTGCTGGCCAGC GGCTGGAACCAGCGCAACTACGACGGATTCCTCCGGCTGATCCTCGACGGCCAGGCCGACCTGCGCTTCTGG TGCGGCCAGGAACAAGGCTGCGACCTCAAGCTGAACCAGTCGCTGCGCAGCGCCCTCGACGAACTGCGAGCC GCCCACGGAAGCGCGCCGGACGGCTGGAAGTGGGGCGAGGCGCACGCCGCCCTCGCCGAGCACGTGCCCTTC CACAAGACCCCGTTGCGCACGCTGTTCGACCTGAAGAACAACAAGGGCGGCGACAACTTCAGCGTCAACGTC GGGCGCTTCGACTACAGCGACCCGGCCAACCCGTTCAACACCCGGATCGCCGCGACCCTGCGGATGGTCATC GACCTGGCGGACTTCGACAACTCGCGCTACGCGCTGTCCACCCGCAACTCCGGCCTGCCGTTCGACGGCGCC ACCGACCTCAACGAACTCTGGGCCCGCGGCGCGTACATCCGTATCGCCGACGACGCCCCCGACGCGACGGAC CGCCAGTTGGTCCTGCGCCCTTCAGCCCCTTCCTCCGGCGAGCCACGACCATGA