ViewGene
Locus Name:
GeneID:
Location:

GeneID:1639
TrivialName: PA14_18550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18550
PAO1 Ortholog Locus:PA3542
Sequence Length:1170
Protein Length:389
Start: 1592291
Stop: 1591122
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06930.1|AE004775_1 (AE004775) alginate biosynthesis protein Alg44 [Pseudomonas aeruginosa PAO1]
Identities = 389/389 (100%), Positives = 389/389 (100%)
Sequence:
ATGAATACAGCCGTCAACGTCAACGTCGTGCACGAATCCGAAGCCCAGCGCCAGTTCGCCCGGGTCAAGCTG
CCGGCGCGCATCCGCTACATCGGCGCCAACCGCGAAGGCGTCGACGCACGCCTGCTGGATCTCTCCGCCGGC
GGCTTCGCCTTCACCGCGAGCGGCGCGCCGATCCAGCCAGGCGACCTGTACAAGGGCAAGCTGCTGTTCCAG
GTCGACAGCATCAGCTTTTCCCTCGAAGTGGAGTTCCAGGTGCGCTCGGTGGACCCCGCCAGCCGCCGCGTC
GGCTGCGAGTTCCAGAACCTCAAGCCGCGCGAGGTGGCGGCCCTGCGCTACCTGATCACCTCCTACCTGGCC
GGCGAGGTGATCGGCGTCGGCGACATGCTCAATACCCTCCAGCGCGAGAACTTCACCAAGGCCCGCAAGCAG
GGCGGCGGCAACGGCGGGATGGGCTTCTTCGGCCGGGTCCGGGCGGTGACCCTGAGCACCGCGATCTTCGTC
GTCGGGGTCGGCGCCTTCGCCTTCATCCTCAACCAGATGTACAACCTGTACTTCGTCACCCATGCCGATTCC
GGCGTGGTCAGCGTCCCCAACCAGCAGATCACCATGCCCCGCGAGGGCACCGTGCAGAGCCTTCTCGGGCCC
AACGCGGAAGTCGCCAAAGGCGCGCCGATCGCTACCTTCTCGGCCAACCTGCTGGACATGCTCAAGGGCAAC
CTGACCGAGGAGCAGCTCAACCCGGGCAACATCGAGAAGCTCTTCGGCCACCAGATGAAAGGGACCCTGACC
AGCCCCTGCGACTGCCGCGTAGTCCAGCAACTGGTAGCCGACGGGCAATACGCCAACAAGGGCCAGGTGATC
TTCACCCTCGCCCCGCGCGACAGCGTGGCCAGCATCGAGGCGCGCTTCCCCTACCGCAACGCCGCCGAGCTG
GCGCCGGGCACCCGGGTGAACTTCCAGGTCGCCGGCGACGGCGTCAACCGCAGCGGCCGCATCGTCAACACC
GCGCCGGTGGACGGCGACCTGTCCTCGGAAATCCGCGTGCAGATCCAGCCCGACCAGCCGCTCGACGCCCAG
TACGCCGGCCGCCCGGCCGAGGTCAGCATCGGCGGCCTGCCCGGCCGCACCCTGCTGAACAAGGCCGTGACC
CTGGCCACCGCTCGCTGA
Translation:
MNTAVNVNVVHESEAQRQFARVKLPARIRYIGANREGVDARLLDLSAGGFAFTASGAPIQPGDLYKGKLLFQ
VDSISFSLEVEFQVRSVDPASRRVGCEFQNLKPREVAALRYLITSYLAGEVIGVGDMLNTLQRENFTKARKQ
GGGNGGMGFFGRVRAVTLSTAIFVVGVGAFAFILNQMYNLYFVTHADSGVVSVPNQQITMPREGTVQSLLGP
NAEVAKGAPIATFSANLLDMLKGNLTEEQLNPGNIEKLFGHQMKGTLTSPCDCRVVQQLVADGQYANKGQVI
FTLAPRDSVASIEARFPYRNAAELAPGTRVNFQVAGDGVNRSGRIVNTAPVDGDLSSEIRVQIQPDQPLDAQ
YAGRPAEVSIGGLPGRTLLNKAVTLATAR*
AnnotationID:1648GeneID:1639
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:42
Gene Name:alg44
Confidence Code:1
GeneProduct:alginate biosynthesis protein Alg44
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Adaptation, protection; Cell wall / LPS / capsule
EC Number:6.3.1.2
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA70054.1| (Y08819) Alg44 protein [Azotobacter vinelandii]
          Length = 389

 Score =  459 bits (1180), Expect = e-128
 Identities = 235/387 (60%), Positives = 306/387 (79%), Gaps = 4/387 (1%)

>gb|AAN66910.1|AE016319_6 (AE016778) alginate biosynthesis protein Alg44 [Pseudomonas putida
           KT2440]
          Length = 388

 Score =  430 bits (1106), Expect = e-120
 Identities = 215/385 (55%), Positives = 292/385 (75%), Gaps = 3/385 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3281




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20428




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34128




  
Author/Investigator(s):
        Maharaj R, May TB, Wang SK, Chakrabarty AM.





  
Title:
        Sequence of the alg8 and alg44 genes involved in the synthesis of alginate by Pseudomonas aeruginosa.




  
PubMed:
        8294014


MedLine:
        




    
Source:
Gene. 1993 Dec 22;136(1-2):267-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8294014









           
Homologs By Global Alignment 

           

       



     
Gene ID:1639
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2898
                           PA3542_tr
                           translation of PA3542
                           389
                           99.99
                           99.99
                           0
                           1966.0
     

     
     
90431
                           gb|AAG06930.1|AE004775_1
                           (AE004775) alginate biosynthesis protein Alg44 [Pseudomonas aeruginosa PAO1]
                           389
                           99.99
                           99.99
                           0
                           1966.0
     

     
     
90432
                           gb|AAC36876.1|
                           (L22611) alginate synthesis-related protein [Pseudomonas aeruginosa]
                           395
                           72.40
                           73.41
                           85
                           1394.0
     

     
     
90433
                           emb|CAA70054.1|
                           (Y08819) Alg44 protein [Azotobacter vinelandii]
                           392
                           59.94
                           78.06
                           6
                           1186.0
     

     
     
90434
                           gb|AAN66910.1|AE016319_6
                           (AE016778) alginate biosynthesis protein Alg44 [Pseudomonas putida KT2440]
                           392
                           55.10
                           74.48
                           7
                           1112.0
     

     






      

          
GC ORFID: 44641How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3542Glimmer Score: 

          
Start: 3361644Stop: 3362813

          
Length: 1170


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3542 translation of PA3542Homolog Bit Score 761.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4993 (ORF: BLASTX 432.0), t_PA3542 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACAGCCGTCAACGTCAACGTCGTGCACGAATCCGAAGCCCAGCGCCAGTTCGCCCGGGTCAAGCTG 
CCGGCGCGCATCCGCTACATCGGCGCCAACCGCGAAGGCGTCGACGCACGCCTGCTGGATCTCTCCGCCGGC 
GGCTTCGCCTTCACCGCGAGCGGCGCGCCGATCCAGCCAGGCGACCTGTACAAGGGCAAGCTGCTGTTCCAG 
GTCGACAGCATCAGCTTTTCCCTCGAAGTGGAGTTCCAGGTGCGCTCGGTGGACCCCGCCAGCCGCCGCGTC 
GGCTGCGAGTTCCAGAACCTCAAGCCGCGCGAGGTGGCGGCCCTGCGCTACCTGATCACCTCCTACCTGGCC 
GGCGAGGTGATCGGCGTCGGCGACATGCTCAATACCCTCCAGCGCGAGAACTTCACCAAGGCCCGCAAGCAG 
GGCGGCGGCAACGGCGGGATGGGCTTCTTCGGCCGGGTCCGGGCGGTGACCCTGAGCACCGCGATCTTCGTC 
GTCGGGGTCGGCGCCTTCGCCTTCATCCTCAACCAGATGTACAACCTGTACTTCGTCACCCATGCCGATTCC 
GGCGTGGTCAGCGTCCCCAACCAGCAGATCACCATGCCCCGCGAGGGCACCGTGCAGAGCCTTCTCGGGCCC 
AACGCGGAAGTCGCCAAAGGCGCGCCGATCGCTACCTTCTCGGCCAACCTGCTGGACATGCTCAAGGGCAAC 
CTGACCGAGGAGCAGCTCAACCCGGGCAACATCGAGAAGCTCTTCGGCCACCAGATGAAAGGGACCCTGACC 
AGCCCCTGCGACTGCCGCGTAGTCCAGCAACTGGTAGCCGACGGGCAATACGCCAACAAGGGCCAGGTGATC 
TTCACCCTCGCCCCGCGCGACAGCGTGGCCAGCATCGAGGCGCGCTTCCCCTACCGCAACGCCGCCGAGCTG 
GCGCCGGGCACCCGGGTGAACTTCCAGGTCGCCGGCGACGGCGTCAACCGCAGCGGCCGCATCGTCAACACC 
GCGCCGGTGGACGGCGACCTGTCCTCGGAAATCCGCGTGCAGATCCAGCCCGACCAGCCGCTCGACGCCCAG 
TACGCCGGCCGCCCGGCCGAGGTCAGCATCGGCGGCCTGCCCGGCCGCACCCTGCTGAACAAGGCCGTGACC 
CTGGCCACCGCTCGCTGA