ViewGene
Locus Name:
GeneID:
Location:

GeneID:1637
TrivialName: PA14_40230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40230
PAO1 Ortholog Locus:PA1877
Sequence Length:1188
Protein Length:395
Start: 3585142
Stop: 3583955
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05266.1|AE004613_11 (AE004613) probable secretion protein [Pseudomonas aeruginosa PAO1]
Identities = 394/395 (99%), Positives = 395/395 (100%)
Sequence:
ATGGACTCTGAACGCGACGCCGCCGCCCTGCGCCGGCAACTGGCCGACCCGTTGCTGGCGGCTACCCACCCG
GTCTACCGGCCGCTGCTCTGGACCCTGCTCGGTTGCGTGCTGCTGTTCATCGGCTGGGCGGCCTGGGCGCAA
CTGGACGAGGTGACCCGCGGCGACGGCCGGGTCGTGCCGTTCAGTCGCATCCAGAAGATCCAGAGCCTGGAG
GGCGGCATCCTCGACCGCCTGCTGGTGAAGGAGGGCGACCTGGTGGAAGTCGGCCAGCCGCTGGTGCGCCTC
GACGAGACGCGCTTCCTCACCAACTTCCAGGAGTCGGCGAACCAGGCCAGCGTGCTGCGCGCGGCCATTGCC
CGGCTCGACGCCGAGGTGCTCGGCAAGAAGAGCATCGAGTTCCCGCCGGACGTCGATCCCGAGGGGCCGCTG
GCGCGTTCCGAACGCGAGCTGTTCAAGTCGCGCCGCGACAAACTGGTGGAGGGCACCCAGGCGATCCAGCGG
CAGATCCACCTGGCGCAGAGCCAGCTCGACCTGGTTCGCCCGCTGGTGGCCAAGCGTGCGGTGAGCCAGATG
GAGGCGCTCAAGCTGAGCCAGGACATCGCCACCCTCAGCGGCAAGCTGACCGAGCTGAAAAGCACCTATTTC
CAGGATGCCTATACCGAGCGCGCCCAGCGCAAGGCCGATCTCAGCGCCCTGGAACCGATCGTCCAGCAGCGC
CAGGACCAGTTGCGCCGCACCGAGATCCTGTCGCCGGTGCGCGGGCGGGTGAACACCGTGCTGATCAACACC
CGCGGCGGGGTGATCCAGCCCGGCGAGCCGATCATGGAAGTGATCCCGGTAGAGGAGCGCCTGCTGGTGGAG
GCGAAGATCAAGCCGCGCGACGTGGCCTTCCTGGTTCCCGGCATGCCGGCCAAGGTGAAGATCACCGCCTAC
GACTACACCATCTACGGCGACCTCAAGGGCACCCTGGAGCAGATCAGCGCCGACACCATCGAGGAGGACACC
CCGCATGGCAAGGAGTCCTACTACCAGGTGCTGATCAAGACCGATGGCAGCCAACTGAAGCGCGGCGAGGAG
GTATTGCCGATCATTCCGGGGATGGTCGCCGAGGTGGACATCCTCAGCGGCAAGCGCAGCGTGCTCAACTAC
CTGCTGCGGCCGCTGATCAAGGCGCGCCTTTACTGA
Translation:
MDSERDAAALRRQLADPLLAATHPVYRPLLWTLLGCVLLFIGWAAWAQLDEVTRGDGRVVPFSRIQKIQSLE
GGILDRLLVKEGDLVEVGQPLVRLDETRFLTNFQESANQASVLRAAIARLDAEVLGKKSIEFPPDVDPEGPL
ARSERELFKSRRDKLVEGTQAIQRQIHLAQSQLDLVRPLVAKRAVSQMEALKLSQDIATLSGKLTELKSTYF
QDAYTERAQRKADLSALEPIVQQRQDQLRRTEILSPVRGRVNTVLINTRGGVIQPGEPIMEVIPVEERLLVE
AKIKPRDVAFLVPGMPAKVKITAYDYTIYGDLKGTLEQISADTIEEDTPHGKESYYQVLIKTDGSQLKRGEE
VLPIIPGMVAEVDILSGKRSVLNYLLRPLIKARLY*
AnnotationID:1646GeneID:1637
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:33
Gene Name:
Confidence Code:3
GeneProduct:putative secretion protein
Cell Localization:()
Synonyms:PA1877
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65799.1|AE016207_6 (AE016774) HlyD family secretion protein [Pseudomonas putida
           KT2440]
          Length = 458

 Score =  283 bits (723), Expect = 2e-75
 Identities = 162/411 (39%), Positives = 240/411 (58%), Gaps = 44/411 (10%)

>gb|AAG54840.1|AE005229_3 (AE005229) putative membrane spanning export protein [Escherichia
           coli O157:H7 EDL933]
          Length = 391

 Score =  280 bits (716), Expect = 1e-74
 Identities = 155/358 (43%), Positives = 227/358 (63%), Gaps = 3/358 (0%)

>emb|CAD84069.1| (BX321856) putative hemolysin-type secretion transmembrane protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 390

 Score =  276 bits (706), Expect = 2e-73
 Identities = 154/365 (42%), Positives = 229/365 (62%), Gaps = 2/365 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3277




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20424




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37052




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1637_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1637
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2896
                           PA1877_tr
                           translation of PA1877
                           395
                           99.74
                           99.99
                           0
                           1965.0
     

     
     
90418
                           gb|AAG05266.1|AE004613_11
                           (AE004613) probable secretion protein [Pseudomonas aeruginosa PAO1]
                           395
                           99.74
                           99.99
                           0
                           1965.0
     

     
     
90423
                           dbj|BAB33967.1|
                           (AP002552) putative membrane fusion protein of a transport system [Escherichia coli O157:H7]
                           402
                           40.54
                           59.45
                           18
                           712.0
     

     
     
90422
                           gb|AAG54840.1|AE005229_3
                           (AE005229) putative membrane spanning export protein [Escherichia coli O157:H7 EDL933]
                           402
                           40.54
                           59.45
                           18
                           712.0
     

     
     
90424
                           emb|CAD84069.1|
                           (BX321856) putative hemolysin-type secretion transmembrane protein [Nitrosomonas europaea ATCC 19718]
                           410
                           38.78
                           56.82
                           35
                           698.0
     

     






      

          
GC ORFID: 44639How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1877Glimmer Score: 

          
Start: 1368768Stop: 1369955

          
Length: 1188


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1877 translation of PA1877Homolog Bit Score 761.0

          
Other Homologs:  t_PA1877 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTCTGAACGCGACGCCGCCGCCCTGCGCCGGCAACTGGCCGACCCGTTGCTGGCGGCTACCCACCCG 
GTCTACCGGCCGCTGCTCTGGACCCTGCTCGGTTGCGTGCTGCTGTTCATCGGCTGGGCGGCCTGGGCGCAA 
CTGGACGAGGTGACCCGCGGCGACGGCCGGGTCGTGCCGTTCAGTCGCATCCAGAAGATCCAGAGCCTGGAG 
GGCGGCATCCTCGACCGCCTGCTGGTGAAGGAGGGCGACCTGGTGGAAGTCGGCCAGCCGCTGGTGCGCCTC 
GACGAGACGCGCTTCCTCACCAACTTCCAGGAGTCGGCGAACCAGGCCAGCGTGCTGCGCGCGGCCATTGCC 
CGGCTCGACGCCGAGGTGCTCGGCAAGAAGAGCATCGAGTTCCCGCCGGACGTCGATCCCGAGGGGCCGCTG 
GCGCGTTCCGAACGCGAGCTGTTCAAGTCGCGCCGCGACAAACTGGTGGAGGGCACCCAGGCGATCCAGCGG 
CAGATCCACCTGGCGCAGAGCCAGCTCGACCTGGTTCGCCCGCTGGTGGCCAAGCGTGCGGTGAGCCAGATG 
GAGGCGCTCAAGCTGAGCCAGGACATCGCCACCCTCAGCGGCAAGCTGACCGAGCTGAAAAGCACCTATTTC 
CAGGATGCCTATACCGAGCGCGCCCAGCGCAAGGCCGATCTCAGCGCCCTGGAACCGATCGTCCAGCAGCGC 
CAGGACCAGTTGCGCCGCACCGAGATCCTGTCGCCGGTGCGCGGGCGGGTGAACACCGTGCTGATCAACACC 
CGCGGCGGGGTGATCCAGCCCGGCGAGCCGATCATGGAAGTGATCCCGGTAGAGGAGCGCCTGCTGGTGGAG 
GCGAAGATCAAGCCGCGCGACGTGGCCTTCCTGGTTCCCGGCATGCCGGCCAAGGTGAAGATCACCGCCTAC 
GACTACACCATCTACGGCGACCTCAAGGGCACCCTGGAGCAGATCAGCGCCGACACCATCGAGGAGGACACC 
CCGCATGGCAAGGAGTCCTACTACCAGGTGCTGATCAAGACCGATGGCAGCCAACTGAAGCGCGGCGAGGAG 
GTATTGCCGATCATTCCGGGGATGGTCGCCGAGGTGGACATCCTCAGCGGCAAGCGCAGCGTGCTCAACTAC 
CTGCTGCGGCCGCTGATCAAGGCGCGCCTTTACTGA