ViewGene
Locus Name:
GeneID:
Location:

GeneID:1635
TrivialName: PA14_40540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40540
PAO1 Ortholog Locus:PA1854
Sequence Length:1158
Protein Length:385
Start: 3619855
Stop: 3621012
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05243.1|AE004611_8 (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 382/385 (99%), Positives = 384/385 (99%)
Sequence:
ATGAACGACTCCCCCAGCACCGCCGTACGCACCTGGCTGAAAGGCTTCCGCCCCCTGACCCTGAACGCTCGA
CCGCGCGACTGCCTGCGCGCCGGACTCGGTGCCTGCATCGGCGCGCTCGCCGCGGTATTCGCCTGCCAGGCG
TTGTTCGGCAGCGAACTGGCGCTGCGCCTGGCAGCGCCGCTCGGCGCATCCGCCGTACTACTGTTCGCCCTC
GCCTCCAGCCCCCTGGCGCAACCCTGGTCGATGCTCGGCGGCAACCTGGTCGCCGCCCTGGCCGGCGGCCTC
AGCGCCTACTGGTTCGGGCACGAACTGGCCCCGGCCCTGGTCGGCATGGCCCTCGGCATGCTGCTGATGTTC
GCCCTGCGCTGCCTGCATCCGCCGAGCTGCGCGCTGGCCCTGAGCGTGGCCCTCAACCCGTCCCTGAGCGAA
CTCGGCATCGACGTGGTCTGGCCGATCCTGCTCTCCACCCTGGTGCTGATCGGCTGCGCGCTGCTCTACAAC
AACCTGATGCGCTCTCCCTACCCGCGCCCCTACCAGCCGCCGCGGGCCAATCTCCATGGCACCCGCGACCTG
GCGCCGAGCGCGCGAACGGACTTCTCCGCCCGGGACCTGGACCAGGCGCTGCAAGACTTCGGCGAATACGTC
GACATCACCCGCGACGACCTCGAGCGACTGATCCACCACACCGAGCGCTACGCCTTGCGCCGGCGCATGGGC
GAGCTGACCGCGGCACGGATCATGTCCCGCGACGTGCAGACCGCCAGCACCGAGACCTTCATCGACGACGCC
TGGAAGCAGTTGCAGGACCACCGCCTGAAGGCCCTGCCGGTGCTCGACGAGCATCGGCGGCTGGCCGGCATC
GTCACCCAGAGCGACCTGCTCAAGCACTTCCGCCCCGACGGCAGCCCGTTCAAGCGCCTGCGCTTCCTGCGC
GGGACCAAGCTGAAGACGATCATGACCACCCCGGTGGTCTGCGTACAGGCCGACACCCACGCCGTCGAGCTG
GTCTCGCTGCTATCCGACGAAGGCCTGCACTGCCTGCCGGTGCTCAACGAAGCTGGCTACCTGGTCGGCATC
GTCAGCCAGACCGACCTGATCGCCGCGCTCTACCGCAACTGGCTGCAGCACCTGGGCCAGGCCGATCAGATC
ACGTAG
Translation:
MNDSPSTAVRTWLKGFRPLTLNARPRDCLRAGLGACIGALAAVFACQALFGSELALRLAAPLGASAVLLFAL
ASSPLAQPWSMLGGNLVAALAGGLSAYWFGHELAPALVGMALGMLLMFALRCLHPPSCALALSVALNPSLSE
LGIDVVWPILLSTLVLIGCALLYNNLMRSPYPRPYQPPRANLHGTRDLAPSARTDFSARDLDQALQDFGEYV
DITRDDLERLIHHTERYALRRRMGELTAARIMSRDVQTASTETFIDDAWKQLQDHRLKALPVLDEHRRLAGI
VTQSDLLKHFRPDGSPFKRLRFLRGTKLKTIMTTPVVCVQADTHAVELVSLLSDEGLHCLPVLNEAGYLVGI
VSQTDLIAALYRNWLQHLGQADQIT*
AnnotationID:1644GeneID:1635
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 12:12:49
Gene Name:
Confidence Code:3
GeneProduct:putative CBS-domain-containing membrane protein
Cell Localization:()
Synonyms:PA1854
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3448
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
OG3448, COG3448, CBS-domain-containing membrane protein 
[Signal transduction mechanisms]
CD-Length = 382 residues, 100.0% aligned
Score =  519 bits (1339), Expect = 2e-148
Identities = 236/384 (61%), Positives = 276/384 (71%), Gaps = 5/384 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3273




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20420




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37049




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1635_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1635
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2893
                           PA1854_tr
                           translation of PA1854
                           385
                           99.22
                           99.74
                           0
                           1968.0
     

     
     
90365
                           gb|AAG05243.1|AE004611_8
                           (AE004611) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           385
                           99.22
                           99.74
                           0
                           1968.0
     

     
     
90366
                           emb|CAA98155.1|
                           (Z73914) ORF378 protein [Pseudomonas stutzeri]
                           395
                           53.16
                           68.86
                           27
                           992.0
     

     
     
90367
                           gb|AAN67962.1|AE016428_10
                           (AE016782) CBS domain protein [Pseudomonas putida KT2440]
                           396
                           41.66
                           59.09
                           23
                           716.0
     

     






      

          
GC ORFID: 44637How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1854Glimmer Score: 

          
Start: 1334055Stop: 1332898

          
Length: 1158


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1854 translation of PA1854Homolog Bit Score 762.0

          
Other Homologs:  t_PA1854 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACTCCCCCAGCACCGCCGTACGCACCTGGCTGAAAGGCTTCCGCCCCCTGACCCTGAACGCTCGA 
CCGCGCGACTGCCTGCGCGCCGGACTCGGTGCCTGCATCGGCGCGCTCGCCGCGGTATTCGCCTGCCAGGCG 
TTGTTCGGCAGCGAACTGGCGCTGCGCCTGGCAGCGCCGCTCGGCGCATCCGCCGTACTACTGTTCGCCCTC 
GCCTCCAGCCCCCTGGCGCAACCCTGGTCGATGCTCGGCGGCAACCTGGTCGCCGCCCTGGCCGGCGGCCTC 
AGCGCCTACTGGTTCGGGCACGAACTGGCCCCGGCCCTGGTCGGCATGGCCCTCGGCATGCTGCTGATGTTC 
GCCCTGCGCTGCCTGCATCCGCCGAGCTGCGCGCTGGCCCTGAGCGTGGCCCTCAACCCGTCCCTGAGCGAA 
CTCGGCATCGACGTGGTCTGGCCGATCCTGCTCTCCACCCTGGTGCTGATCGGCTGCGCGCTGCTCTACAAC 
AACCTGATGCGCTCTCCCTACCCGCGCCCCTACCAGCCGCCGCGGGCCAATCTCCATGGCACCCGCGACCTG 
GCGCCGAGCGCGCGAACGGACTTCTCCGCCCGGGACCTGGACCAGGCGCTGCAAGACTTCGGCGAATACGTC 
GACATCACCCGCGACGACCTCGAGCGACTGATCCACCACACCGAGCGCTACGCCTTGCGCCGGCGCATGGGC 
GAGCTGACCGCGGCACGGATCATGTCCCGCGACGTGCAGACCGCCAGCACCGAGACCTTCATCGACGACGCC 
TGGAAGCAGTTGCAGGACCACCGCCTGAAGGCCCTGCCGGTGCTCGACGAGCATCGGCGGCTGGCCGGCATC 
GTCACCCAGAGCGACCTGCTCAAGCACTTCCGCCCCGACGGCAGCCCGTTCAAGCGCCTGCGCTTCCTGCGC 
GGGACCAAGCTGAAGACGATCATGACCACCCCGGTGGTCTGCGTACAGGCCGACACCCACGCCGTCGAGCTG 
GTCTCGCTGCTATCCGACGAAGGCCTGCACTGCCTGCCGGTGCTCAACGAAGCTGGCTACCTGGTCGGCATC 
GTCAGCCAGACCGACCTGATCGCCGCGCTCTACCGCAACTGGCTGCAGCACCTGGGCCAGGCCGATCAGATC 
ACGTAG