ViewGene
Locus Name:
GeneID:
Location:

GeneID:1634
TrivialName: PA14_46810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46810
PAO1 Ortholog Locus:PA1351
Sequence Length:1224
Protein Length:407
Start: 4169769
Stop: 4168546
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04740.1|AE004564_9 (AE004564) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 398/407 (97%), Positives = 399/407 (98%)
Sequence:
TTGCGCAGCCGCATCGAGGCGCTGTACCGCGAGGAGTCGCGGCGCGTGCTGGCGACCCTGATCCGCCTGCTC
GGCGATTTCGAGCTGGCCGAGGAAGCCTTGCACGACGCCTTCATCGCCGCCGTCGAGCAGTGGCCGCGCGAC
GGTATCCCGCGTAACCCGCGCGCCTGGCTGGTTTCCGCCGGGCGCTTCAAGGCCATCGACAACCTGCGCCGG
CGAGCGCGCTTCGACGCCTCGCAGCGGCTGCTCGCCGAGCAACTGGAAGAGCAGGCCGAGGCGCCGGCGGAG
GAGGGCGATGCGGTGGAAGaCGACCGGCTACGCCTGATCTTCACCTGCTGCCACCCGGCGCTGACCCCCGAG
GCACAGGTGGCGCTGACCCTGCGCGAGGTCTGCGACCTGCGCACCGAGGAGATCGCCCGCGCCTTCCTCGCC
GCGCCCAGCGCCATCGCCCAACGCATCGTGCGGGCCAAGAACAAGATCCGCGAGGCCCGGATTCCCTACCAG
GTACCGACCCTGGAGGAACTCCCCGAGCGGCTGGGCAACGTCCTGCAAGTGATCTACCTGGTGTTCAACGAG
GGCTACTCGGCCTCCACCGGCACCAGCCTGACCCGCGCCGATCTCAGCGGCGAGGCGATCCGCGTCGGCCGC
CTGCTGGTCGAACTGCTGCCCGACCCCGAGGCCCTCGGCCTGCTCGCCCTGATGTTGCTGCACGACTCGCGG
CGCCAGGCGCGGACCTCGGCCAGCGGCGAACTGGTGCGGCTCGACGAGCAGGACCGCGCGCTGTGGGATCGT
GGACTGATCGTCGAGGGGCTCGGCCTGGTCGAGCGGGCCCTGGCCAGCCGCCGTTTCGGGGCCTACACCCTG
CAGGCGGCCATCGTCGCGGTGCACGCCCAGGCGCCGCGCGCCGAGGACACCGACTGGGCACGGATCGTCGCC
CTCTACGACGCGCTACTGCGCCTGGCGCCATCGCCGGTGATCGAACTCAACCGCGCCGTGGCCTTGGCCATG
TGCGATGGCGTCGAGGTCGGGCTGGCCGCGGTCGATGCGTTGCTGGCGCGGGGTGAACTGGCCGATTACCAC
CTGGTGCACTCGGCGCGCGCCGACTTCTGCCGCCGTCTCGGTCGCCGCCGCGAGGCCCGCGAGGCCTACCGC
GCGGCGCTGGCCCTGGCGCGCCAGGAGCCGGAGCGGCGCTTCATCGAGCAGCGCCTGCGCGAACTCGATTGA
Translation:
MRSRIEALYREESRRVLATLIRLLGDFELAEEALHDAFIAAVEQWPRDGIPRNPRAWLVSAGRFKAIDNLRR
RARFDASQRLLAEQLEEQAEAPAEEGDAVEDDRLRLIFTCCHPALTPEAQVALTLREVCDLRTEEIARAFLA
APSAIAQRIVRAKNKIREARIPYQVPTLEELPERLGNVLQVIYLVFNEGYSASTGTSLTRADLSGEAIRVGR
LLVELLPDPEALGLLALMLLHDSRRQARTSASGELVRLDEQDRALWDRGLIVEGLGLVERALASRRFGAYTL
QAAIVAVHAQAPRAEDTDWARIVALYDALLRLAPSPVIELNRAVALAMCDGVEVGLAAVDALLARGELADYH
LVHSARADFCRRLGRRREAREAYRAALALARQEPERRFIEQRLRELD*
AnnotationID:1643GeneID:1634
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:22
Gene Name:
Confidence Code:3
GeneProduct:putative sigma-70 factor, ECF subfamily
Cell Localization:()
Synonyms:PA1351
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4941
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70126.1|AE016652_7 (AE016791) RNA polymerase sigma-70 factor, ECF subfamily
           [Pseudomonas putida KT2440]
          Length = 406

 Score =  529 bits (1362), Expect = e-149
 Identities = 276/407 (67%), Positives = 327/407 (80%), Gaps = 1/407 (0%)

>emb|CAD71648.1| (BX294133) probable sigma-70 factor, ECF subfamily [Pirellula sp.]
          Length = 419

 Score =  482 bits (1241), Expect = e-135
 Identities = 245/406 (60%), Positives = 310/406 (76%), Gaps = 3/406 (0%)

>dbj|BAB54217.1| (AP003012) sigma-70 factor, ECF subfamily [Mesorhizobium loti]
          Length = 417

 Score =  462 bits (1189), Expect = e-129
 Identities = 245/403 (60%), Positives = 295/403 (73%), Gaps = 4/403 (0%)








 
Structural Features:
COG4941, COG4941, Predicted RNA polymerase sigma factor containing 
a TPR repeat domain [Transcription]
CD-Length = 415 residues,  98.8% aligned
Score =  464 bits (1195), Expect = 8e-132
Identities = 259/410 (63%), Positives = 299/410 (72%), Gaps = 3/410 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14401




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20418




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37474




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1634_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1634
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2892
                           PA1351_tr
                           translation of PA1351
                           407
                           97.78
                           98.03
                           0
                           1968.0
     

     
     
90342
                           gb|AAG04740.1|AE004564_9
                           (AE004564) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
                           407
                           97.54
                           98.03
                           0
                           1966.0
     

     
     
90344
                           gb|AAN70126.1|AE016652_7
                           (AE016791) RNA polymerase sigma-70 factor, ECF subfamily [Pseudomonas putida KT2440]
                           407
                           67.56
                           80.34
                           1
                           1361.0
     

     
     
90343
                           dbj|BAC91889.1|
                           (AP006581) gll3948 [Gloeobacter violaceus PCC 7421]
                           415
                           66.26
                           79.03
                           9
                           1387.0
     

     
     
90346
                           dbj|BAB54217.1|
                           (AP003012) sigma-70 factor, ECF subfamily [Mesorhizobium loti]
                           420
                           58.33
                           70.47
                           16
                           1190.0
     

     






      

          
GC ORFID: 44636How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1351Glimmer Score: 

          
Start: 784140Stop: 785363

          
Length: 1224


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1351 translation of PA1351Homolog Bit Score 762.0

          
Other Homologs:  t_PA1351 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCGCAGCCGCATCGAGGCGCTGTACCGCGAGGAGTCGCGGCGCGTGCTGGCGACCCTGATCCGCCTGCTC 
GGCGATTTCGAGCTGGCCGAGGAAGCCTTGCACGACGCCTTCATCGCCGCCGTCGAGCAGTGGCCGCGCGAC 
GGTATCCCGCGTAACCCGCGCGCCTGGCTGGTTTCCGCCGGGCGCTTCAAGGCCATCGACAACCTGCGCCGG 
CGAGCGCGCTTCGACGCCTCGCAGCGGCTGCTCGCCGAGCAACTGGAAGAGCAGGCCGAGGCGCCGGCGGAG 
GAGGGCGATGCGGTGGAAGaCGACCGGCTACGCCTGATCTTCACCTGCTGCCACCCGGCGCTGACCCCCGAG 
GCACAGGTGGCGCTGACCCTGCGCGAGGTCTGCGACCTGCGCACCGAGGAGATCGCCCGCGCCTTCCTCGCC 
GCGCCCAGCGCCATCGCCCAACGCATCGTGCGGGCCAAGAACAAGATCCGCGAGGCCCGGATTCCCTACCAG 
GTACCGACCCTGGAGGAACTCCCCGAGCGGCTGGGCAACGTCCTGCAAGTGATCTACCTGGTGTTCAACGAG 
GGCTACTCGGCCTCCACCGGCACCAGCCTGACCCGCGCCGATCTCAGCGGCGAGGCGATCCGCGTCGGCCGC 
CTGCTGGTCGAACTGCTGCCCGACCCCGAGGCCCTCGGCCTGCTCGCCCTGATGTTGCTGCACGACTCGCGG 
CGCCAGGCGCGGACCTCGGCCAGCGGCGAACTGGTGCGGCTCGACGAGCAGGACCGCGCGCTGTGGGATCGT 
GGACTGATCGTCGAGGGGCTCGGCCTGGTCGAGCGGGCCCTGGCCAGCCGCCGTTTCGGGGCCTACACCCTG 
CAGGCGGCCATCGTCGCGGTGCACGCCCAGGCGCCGCGCGCCGAGGACACCGACTGGGCACGGATCGTCGCC 
CTCTACGACGCGCTACTGCGCCTGGCGCCATCGCCGGTGATCGAACTCAACCGCGCCGTGGCCTTGGCCATG 
TGCGATGGCGTCGAGGTCGGGCTGGCCGCGGTCGATGCGTTGCTGGCGCGGGGTGAACTGGCCGATTACCAC 
CTGGTGCACTCGGCGCGCGCCGACTTCTGCCGCCGTCTCGGTCGCCGCCGCGAGGCCCGCGAGGCCTACCGC 
GCGGCGCTGGCCCTGGCGCGCCAGGAGCCGGAGCGGCGCTTCATCGAGCAGCGCCTGCGCGAACTCGATTGA