ViewGene

Locus Name:
GeneID:
Location:

GeneID:1633
TrivialName: PA14_07300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07300
PAO1 Ortholog Locus:PA0561
Sequence Length:1155
Protein Length:384
Start: 628151
Stop: 629305
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03950.1|AE004492_9 (AE004492) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 380/384 (98%), Positives = 380/384 (98%)
Sequence:
ATGGGAAGCGCTTCGCAACGTTCGGTGCAGGATCTTTATGAGGACGTGGGAGATCACTACCGGATCTTTATC
CGGGCGCCATTCTTTCAATTGCTGAAACACAGGGACTACTGGGTTCCCCTGCTGTATTTCTTCTTCGTGTTG
ATCACGATGTTCTGGGACTTGTATTGCCACTCCGGACAGTACCTCTACGAAGCCAGGAGTCTGCTCCCTTTC
TATCTGTTCCCGTTTCTGATCGCTGCGCTACGGATAGGCGATATCGTCGTCGATACGCGCTGTCGCAATGTG
GAGAACCTGGGAGGCTTCGAGCGCTCCGCCGAGAGCAGTCGCTACGTCCAGCTTTCCCTCTACGAACGGCAA
TGGTTCCGGCTGCGGTACCGGGCCTATGGCGGTAACCTCCGCTGCCTGGCGGGCGATCTGGTGGAGAACTGG
CGCCTCTGGAAGGAGGTGAATTCGAAGGCCGCGAAGGATATCGACGGCGCAGTGATGCTGCGATTCTTTCTG
CCTCCCCGGGACCTTGCTCGTCTGGTCACGCTGTTGGCTGCGCTCATTGCGGTCATCGCCACTCTCATCATT
ACCCTGGGGGCTGACAGGCAGGGCTATTTCGAGTTTGTCGACAACCTGCCCGCCTATCTGAAACTGTATTGG
GGCGTCGTTTTCATCATTGCCTTCAGCGGTCCATACATGATCTTCCTGGGGATGCAGGCGCGCCTGGTACTG
CGCGCAATGATCGACGCATTGTCCATTTCCCAACCAAGCGACAAGCTGTTCTATCAATTCATCCAGCGGCTC
ATCTGGGCGGACGGAGTGAAACCGGCGAACCCCAGTGCCAACAGCAGGGTGCTACGGGCGGTCGACTCCATG
GTCGACTTCTTCTACGAGGAGTGGAGAAGCGCCATCGGCAAGCTTGTGCTGTGGCTCGTTGCCCTGCTTGTG
CTGCTTCTTTGCACGCTTTTGCATTGCCTGCTCCGAGTCTTTTCCTCGGCGAGAACGTTGGGAGAGGCGCTG
ATGCGGATTCTCTTGGCTGTTCTGGGGGGCGTTTGCTGGATAGTCGCGGCGATCCAGCGCTTGAATCTTGCC
GTGCCCTTCCACTGGACCTTCTTCGTGCTGACGGGAACGGGAGCCTTGTTCGCAACCCTCTGCGGGCAGCCC
TGA
Translation:
MGSASQRSVQDLYEDVGDHYRIFIRAPFFQLLKHRDYWVPLLYFFFVLITMFWDLYCHSGQYLYEARSLLPF
YLFPFLIAALRIGDIVVDTRCRNVENLGGFERSAESSRYVQLSLYERQWFRLRYRAYGGNLRCLAGDLVENW
RLWKEVNSKAAKDIDGAVMLRFFLPPRDLARLVTLLAALIAVIATLIITLGADRQGYFEFVDNLPAYLKLYW
GVVFIIAFSGPYMIFLGMQARLVLRAMIDALSISQPSDKLFYQFIQRLIWADGVKPANPSANSRVLRAVDSM
VDFFYEEWRSAIGKLVLWLVALLVLLLCTLLHCLLRVFSSARTLGEALMRILLAVLGGVCWIVAAIQRLNLA
VPFHWTFFVLTGTGALFATLCGQP*
AnnotationID:1642GeneID:1633
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:46
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0561
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3269
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20416
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1633

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2891 PA0561_tr translation of PA0561 384 98.95 98.95 0 1970.0
90341 gb|AAG03950.1|AE004492_9 (AE004492) hypothetical protein PA0561 [Pseudomonas aeruginosa PAO1] 384 98.95 98.95 0 1970.0
GC ORFID: 44635How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0561Glimmer Score:
Start: 6429493Stop: 6430647
Length: 1155
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0561 translation of PA0561Homolog Bit Score 763.0
Other Homologs: t_PA0561 (ORF: GLIMMER)
GC ORF Sequence
ATGGGAAGCGCTTCGCAACGTTCGGTGCAGGATCTTTATGAGGACGTGGGAGATCACTACCGGATCTTTATC
CGGGCGCCATTCTTTCAATTGCTGAAACACAGGGACTACTGGGTTCCCCTGCTGTATTTCTTCTTCGTGTTG
ATCACGATGTTCTGGGACTTGTATTGCCACTCCGGACAGTACCTCTACGAAGCCAGGAGTCTGCTCCCTTTC
TATCTGTTCCCGTTTCTGATCGCTGCGCTACGGATAGGCGATATCGTCGTCGATACGCGCTGTCGCAATGTG
GAGAACCTGGGAGGCTTCGAGCGCTCCGCCGAGAGCAGTCGCTACGTCCAGCTTTCCCTCTACGAACGGCAA
TGGTTCCGGCTGCGGTACCGGGCCTATGGCGGTAACCTCCGCTGCCTGGCGGGCGATCTGGTGGAGAACTGG
CGCCTCTGGAAGGAGGTGAATTCGAAGGCCGCGAAGGATATCGACGGCGCAGTGATGCTGCGATTCTTTCTG
CCTCCCCGGGACCTTGCTCGTCTGGTCACGCTGTTGGCTGCGCTCATTGCGGTCATCGCCACTCTCATCATT
ACCCTGGGGGCTGACAGGCAGGGCTATTTCGAGTTTGTCGACAACCTGCCCGCCTATCTGAAACTGTATTGG
GGCGTCGTTTTCATCATTGCCTTCAGCGGTCCATACATGATCTTCCTGGGGATGCAGGCGCGCCTGGTACTG
CGCGCAATGATCGACGCATTGTCCATTTCCCAACCAAGCGACAAGCTGTTCTATCAATTCATCCAGCGGCTC
ATCTGGGCGGACGGAGTGAAACCGGCGAACCCCAGTGCCAACAGCAGGGTGCTACGGGCGGTCGACTCCATG
GTCGACTTCTTCTACGAGGAGTGGAGAAGCGCCATCGGCAAGCTTGTGCTGTGGCTCGTTGCCCTGCTTGTG
CTGCTTCTTTGCACGCTTTTGCATTGCCTGCTCCGAGTCTTTTCCTCGGCGAGAACGTTGGGAGAGGCGCTG
ATGCGGATTCTCTTGGCTGTTCTGGGGGGCGTTTGCTGGATAGTCGCGGCGATCCAGCGCTTGAATCTTGCC
GTGCCCTTCCACTGGACCTTCTTCGTGCTGACGGGAACGGGAGCCTTGTTCGCAACCCTCTGCGGGCAGCCC
TGA