ViewGene
Locus Name:
GeneID:
Location:

GeneID:1631
TrivialName: PA14_71920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71920
PAO1 Ortholog Locus:PA5448
Sequence Length:1128
Protein Length:375
Start: 6411161
Stop: 6410034
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08833.1|AE004958_3 (AE004958) glycosyltransferase WbpY [Pseudomonas aeruginosa PAO1]
Identities = 375/375 (100%), Positives = 375/375 (100%)
Sequence:
ATGCGGATTGCGGTTAACGCACGGATTCTCCAGGCGCCGCGGACCGGCATCGGACATTACCTGGTCGAGTTG
CTGGGCGCGTTGCAGGCGCACGCGGACTTCGAGTTTTCCCTGTTCCATGGCTGGGGCTGGAGCGGCGACCTG
CCGGCGGCGGCGCTGCCCGGCTATTCGCGTCTGTCGCCCTGGCTGCGCAACCTGCCCGGAGCCTACCGGGCC
CGACGCTGGCTGGAACAGCGGCGTTTCGATAGCGGTCGGCCGCCGGTCGATCTCTACCATGAGCCCAGTCTC
TGGCCGCTGGACTTCGACGGGCCGATGTTGATGACCCTGCACGACCTGACCCACCTGCATTATCCGGCGACG
CAACCCGCCGCCCGCTTGCGCGAAATAGAACGCCGGCTGGCGCGCGGGATGGAAAAGGCGCGGTTGATCCTG
ACCGACTCGCAGGCGATCGCCGACGAGGCGCAGGCGTATTTCGGCCTGCCGCGCGAGCGCTTCGTGGTGGCG
CCCCTCGGCCATGCCGCGCGGTTCCGTCCGCGGGACCGGGAGTCCCTGCGCGAGCCCTTGCGCGCGCATGGC
CTGGTGCCGCGCGGGTATTTCCTCTGCGTAGGAACCCTCGAACCGCGCAAGAACCTGTCGCTGGCCCTGCGC
GCCCATGGGCAACTGCCGGCGGCGGTCCGCCAGCGTTTTCCGCTGATGATCGTCGGCATGCCGGGATGGGAA
AGTCGCTCGCTTGACGACGAACTGCGCCAGGCGCTGGCTTCGGGGACGGTGCGGCTGCTCGGCTACCTGCCG
GACGAGCGGGTCGCCGAGTTGATGTCGGGCGCTCGGGCGCTGGTCTTCCCCTCGATCTACGAAGGCTTCGGC
CTGCCTGTGCTGGAAGCCATGGCCAGCGGCACGCCGGTATTGCTCACGCGACTCTCCGCAATGCCGGAGGTG
GCCGGCGAGGCGGGCAGCTATATTGACCCGGATGATGCCAATGGGCTATCTGACATGCTGGTCCGCATGACC
GAGGATACCGTCTACTGGGAGTGCTGCCGGGAAGCCGGCCTGCGACGGGCGGAGCAGTTTTCCTGGAAGCGT
TGCGCGAATCTCACCGCTGCAGCCTATCGTCGTGCCGTGGAGGGCTGA
Translation:
MRIAVNARILQAPRTGIGHYLVELLGALQAHADFEFSLFHGWGWSGDLPAAALPGYSRLSPWLRNLPGAYRA
RRWLEQRRFDSGRPPVDLYHEPSLWPLDFDGPMLMTLHDLTHLHYPATQPAARLREIERRLARGMEKARLIL
TDSQAIADEAQAYFGLPRERFVVAPLGHAARFRPRDRESLREPLRAHGLVPRGYFLCVGTLEPRKNLSLALR
AHGQLPAAVRQRFPLMIVGMPGWESRSLDDELRQALASGTVRLLGYLPDERVAELMSGARALVFPSIYEGFG
LPVLEAMASGTPVLLTRLSAMPEVAGEAGSYIDPDDANGLSDMLVRMTEDTVYWECCREAGLRRAEQFSWKR
CANLTAAAYRRAVEG*
AnnotationID:1640GeneID:1631
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 20:08:05
Gene Name:wbpY
Confidence Code:1
GeneProduct:glycosyltransferase WbpY
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0438,pfam00534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]
CD-Length = 381 residues,  99.7% aligned
Score =  124 bits (310), Expect = 2e-29
Identities = 109/393 (27%), Positives = 154/393 (39%), Gaps = 31/393 (7%)

pfam00534, Glycos_transf_1, Glycosyl transferases group 1
CD-Length = 172 residues,  90.7% aligned
Score =  112 bits (281), Expect = 7e-26
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 3/157 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3265




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20412




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34664




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1631_cdd.html


    		




 
URL:

















    ReferenceID:35626




  
Author/Investigator(s):
        Rocchetta HL, Burrows LL, Pacan JC, Lam JS.





  
Title:
        Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesis.




  
PubMed:
        9680202


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1103-19.

Erratum in:
    * Mol Microbiol 1998 Dec;30(5):1131.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9680202









           
Homologs By Global Alignment 

           

       



     
Gene ID:1631
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2876
                           PA5448_tr
                           translation of PA5448
                           375
                           99.99
                           99.99
                           0
                           1969.0
     

     
     
89712
                           gb|AAG08833.1|AE004958_3
                           (AE004958) glycosyltransferase WbpY [Pseudomonas aeruginosa PAO1]
                           375
                           99.99
                           99.99
                           0
                           1969.0
     

     
     
89713
                           gb|AAC38771.1|
                           (AF010182) glycosyltransferase WbpY [Pseudomonas aeruginosa]
                           375
                           98.93
                           98.93
                           4
                           1951.0
     

     
     
89714
                           gb|AAM34933.1|
                           (AE011627) mannosyltransferase B [Xanthomonas axonopodis pv. citri str. 306]
                           384
                           41.14
                           55.72
                           13
                           688.0
     

     






      

          
GC ORFID: 44633How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5448Glimmer Score: 

          
Start: 5674850Stop: 5673723

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5448 translation of PA5448Homolog Bit Score 763.0

          
Other Homologs:  t_PA5448 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGATTGCGGTTAACGCACGGATTCTCCAGGCGCCGCGGACCGGCATCGGACATTACCTGGTCGAGTTG 
CTGGGCGCGTTGCAGGCGCACGCGGACTTCGAGTTTTCCCTGTTCCATGGCTGGGGCTGGAGCGGCGACCTG 
CCGGCGGCGGCGCTGCCCGGCTATTCGCGTCTGTCGCCCTGGCTGCGCAACCTGCCCGGAGCCTACCGGGCC 
CGACGCTGGCTGGAACAGCGGCGTTTCGATAGCGGTCGGCCGCCGGTCGATCTCTACCATGAGCCCAGTCTC 
TGGCCGCTGGACTTCGACGGGCCGATGTTGATGACCCTGCACGACCTGACCCACCTGCATTATCCGGCGACG 
CAACCCGCCGCCCGCTTGCGCGAAATAGAACGCCGGCTGGCGCGCGGGATGGAAAAGGCGCGGTTGATCCTG 
ACCGACTCGCAGGCGATCGCCGACGAGGCGCAGGCGTATTTCGGCCTGCCGCGCGAGCGCTTCGTGGTGGCG 
CCCCTCGGCCATGCCGCGCGGTTCCGTCCGCGGGACCGGGAGTCCCTGCGCGAGCCCTTGCGCGCGCATGGC 
CTGGTGCCGCGCGGGTATTTCCTCTGCGTAGGAACCCTCGAACCGCGCAAGAACCTGTCGCTGGCCCTGCGC 
GCCCATGGGCAACTGCCGGCGGCGGTCCGCCAGCGTTTTCCGCTGATGATCGTCGGCATGCCGGGATGGGAA 
AGTCGCTCGCTTGACGACGAACTGCGCCAGGCGCTGGCTTCGGGGACGGTGCGGCTGCTCGGCTACCTGCCG 
GACGAGCGGGTCGCCGAGTTGATGTCGGGCGCTCGGGCGCTGGTCTTCCCCTCGATCTACGAAGGCTTCGGC 
CTGCCTGTGCTGGAAGCCATGGCCAGCGGCACGCCGGTATTGCTCACGCGACTCTCCGCAATGCCGGAGGTG 
GCCGGCGAGGCGGGCAGCTATATTGACCCGGATGATGCCAATGGGCTATCTGACATGCTGGTCCGCATGACC 
GAGGATACCGTCTACTGGGAGTGCTGCCGGGAAGCCGGCCTGCGACGGGCGGAGCAGTTTTCCTGGAAGCGT 
TGCGCGAATCTCACCGCTGCAGCCTATCGTCGTGCCGTGGAGGGCTGA