ViewGene

Locus Name:
GeneID:
Location:

GeneID:1630
TrivialName: PA14_12100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12100
PAO1 Ortholog Locus:PA3999
Sequence Length:1161
Protein Length:386
Start: 1046108
Stop: 1047268
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07386.1|AE004817_10 (AE004817) D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
Identities = 386/386 (100%), Positives = 386/386 (100%)
Sequence:
ATGAACATCACCACTATCGCGAAACGCTTGTCACTGCTTGTCCTGTTCATCGCCCCTACGGCTGGCTGGGCT
GCTGAATCCATGGTTCCGGCGCCGCCGCAACTGGCCGCCAAGTCGTACGTCCTGATGGACGGCGAGAGCGGC
CAGGTTCTGGTCGAGAACAACGGCGACCAGCGCCTGCCGCCGGCCAGCCTGACCAAACTGATGACCGCCTAC
ATCGCCACCAAGGAGATCGAGGCCGGCCGCATCGGCGAGAACGACCTGGTCACCGTCAGCGAACATGCCTGG
CGCACCGGCGGTTCGCGGATGTTCATCAAGGTCGGCAGCCAGGTCTCGGTGAGCGACCTGCTGCATGGCATC
ATCATCCAGTCCGGCAACGACGCCAGCGTCGCCCTGGCCGAGCATATCGCCGGCAGCGAAGACGCCTTCGCC
GACATGATGAACACCACCGCGCAGAAGCTGGGCCTGACCAACTCCCACTTCATGGACGCCACCGGCCTGCCC
AACCCGGACCACTATTCCTCCGCCCGCGACATGGCGGTGCTGGCCCGCGCGATCATCTACGGCGAGCCGAGC
CACTACGCGATCTACGCGCAGAAGGAATTCCTCTGGAACAACATCAAGCAGCCGAACCGCAACCTGCTGCTG
TGGCGCGACAAGACCGTCGACGGCCTGAAGACCGGCCACACCGACGAAGCCGGCTACTGCCTGGTGGCTTCC
GCGGTACGCGACGGCCAGCGCATGATCGCCGTGGTGTTCGGCACCAACAGCGAGCAGGCCCGCGCTGCCGAG
ACCCAGAAGCTGCTGACCTATGGCTTCCGCTTCTTCGAAAGCCGCAACTTCTACAAGAAGGGCACCGAGCTG
ACCAAGGGCCTGGTCTGGAAGGGTTCCGAGCATGAAGTGAAAGCCGGCCTCGCCGAAGACCTGACCATGACC
CTGCCGCGCGGCCAGATGCAGAAGCTGCAGGCCAGCATGGTCCTGGAGCCGCAGCTGATGGCGCCGATCCAG
CAGGGCCAGGTGATCGGCAAGGTGGAAGTGAAGCTGGACGACAAGGTCATCCGCAGCGCCGACCTGGTCGCC
CTCAACGCCGTCGAggAGGGTGGTTTCTTCCGCCGCCTGTGGGATAGCATCCGCCTGTTCTTCTACGGTTTG
TTCAACTGA
Translation:
MNITTIAKRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTKLMTAY
IATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFA
DMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLWNNIKQPNRNLLL
WRDKTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGTEL
TKGLVWKGSEHEVKAGLAEDLTMTLPRGQMQKLQASMVLEPQLMAPIQQGQVIGKVEVKLDDKVIRSADLVA
LNAVEEGGFFRRLWDSIRLFFYGLFN*
AnnotationID:1639GeneID:1630
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 01:01:55
Gene Name:dacC
Confidence Code:2
GeneProduct:D-ala-D-ala-carboxypeptidase
Cell Localization:(8) Periplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:penicillin-binding protein 6 precursor
Functional Category Confidence Code:5
COGs:COG1686,pfam00768
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70372.1|AE016679_4 (AE016792) D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida
           KT2440]
          Length = 386

 Score =  629 bits (1622), Expect = e-180
 Identities = 311/386 (80%), Positives = 348/386 (90%)

>gb|AAO58250.1| (AE016873) D-alanyl-D-alanine carboxypeptidase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 386

 Score =  626 bits (1615), Expect = e-179
 Identities = 308/386 (79%), Positives = 345/386 (89%)

>gb|AAN79397.1|AE016758_1 (AE016758) Penicillin-binding protein 6 precursor [Escherichia coli
           CFT073]
          Length = 407

 Score =  341 bits (875), Expect = 4e-93
 Identities = 183/383 (47%), Positives = 257/383 (67%), Gaps = 10/383 (2%)
Structural Features:
gnl|CDD|11397 COG1686, DacC, D-alanyl-D-alanine carboxypeptidase
[Cell envelope biogenesis, outer membrane]
Length = 389
Score =  427 bits (1100), Expect = e-120
Identities = 194/389 (49%), Positives = 264/389 (67%), Gaps = 5/389 (1%)
Genomic Context:
Comment:
ReferenceID:3263
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20410
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34108
Author/Investigator(s): Baquero MR, Bouzon M, Quintela JC, Ayala JA, Moreno F.
Title: dacD, an Escherichia coli gene encoding a novel penicillin-binding protein (PBP6b) with DD-carboxypeptidase activity.
PubMed: 8955390
MedLine:
Source:
J Bacteriol. 1996 Dec;178(24):7106-11.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8955390
Homologs By Global Alignment
Gene ID:1630

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2875 PA3999_tr translation of PA3999 386 99.99 99.99 0 1970.0
89639 gb|AAG07386.1|AE004817_10 (AE004817) D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1] 386 99.99 99.99 0 1970.0
89640 gb|AAD32234.1|AF147448_5 (AF147448) penicillin-binding protein 5 [Pseudomonas aeruginosa] 386 99.99 99.99 0 1970.0
89641 gb|AAN70372.1|AE016679_4 (AE016792) D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440] 386 80.56 90.15 0 1622.0
89642 gb|AAO58250.1| (AE016873) D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. tomato str. DC3000] 386 79.79 89.37 0 1615.0
GC ORFID: 44632How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3999Glimmer Score:
Start: 3907830Stop: 3906670
Length: 1161
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3999 translation of PA3999Homolog Bit Score 763.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5331 (ORF: BLASTX 628.0), t_PA3999 (ORF: GLIMMER)
GC ORF Sequence
ATGAACATCACCACTATCGCGAAACGCTTGTCACTGCTTGTCCTGTTCATCGCCCCTACGGCTGGCTGGGCT
GCTGAATCCATGGTTCCGGCGCCGCCGCAACTGGCCGCCAAGTCGTACGTCCTGATGGACGGCGAGAGCGGC
CAGGTTCTGGTCGAGAACAACGGCGACCAGCGCCTGCCGCCGGCCAGCCTGACCAAACTGATGACCGCCTAC
ATCGCCACCAAGGAGATCGAGGCCGGCCGCATCGGCGAGAACGACCTGGTCACCGTCAGCGAACATGCCTGG
CGCACCGGCGGTTCGCGGATGTTCATCAAGGTCGGCAGCCAGGTCTCGGTGAGCGACCTGCTGCATGGCATC
ATCATCCAGTCCGGCAACGACGCCAGCGTCGCCCTGGCCGAGCATATCGCCGGCAGCGAAGACGCCTTCGCC
GACATGATGAACACCACCGCGCAGAAGCTGGGCCTGACCAACTCCCACTTCATGGACGCCACCGGCCTGCCC
AACCCGGACCACTATTCCTCCGCCCGCGACATGGCGGTGCTGGCCCGCGCGATCATCTACGGCGAGCCGAGC
CACTACGCGATCTACGCGCAGAAGGAATTCCTCTGGAACAACATCAAGCAGCCGAACCGCAACCTGCTGCTG
TGGCGCGACAAGACCGTCGACGGCCTGAAGACCGGCCACACCGACGAAGCCGGCTACTGCCTGGTGGCTTCC
GCGGTACGCGACGGCCAGCGCATGATCGCCGTGGTGTTCGGCACCAACAGCGAGCAGGCCCGCGCTGCCGAG
ACCCAGAAGCTGCTGACCTATGGCTTCCGCTTCTTCGAAAGCCGCAACTTCTACAAGAAGGGCACCGAGCTG
ACCAAGGGCCTGGTCTGGAAGGGTTCCGAGCATGAAGTGAAAGCCGGCCTCGCCGAAGACCTGACCATGACC
CTGCCGCGCGGCCAGATGCAGAAGCTGCAGGCCAGCATGGTCCTGGAGCCGCAGCTGATGGCGCCGATCCAG
CAGGGCCAGGTGATCGGCAAGGTGGAAGTGAAGCTGGACGACAAGGTCATCCGCAGCGCCGACCTGGTCGCC
CTCAACGCCGTCGAggAGGGTGGTTTCTTCCGCCGCCTGTGGGATAGCATCCGCCTGTTCTTCTACGGTTTG
TTCAACTGA