ViewGene
Locus Name:
GeneID:
Location:

GeneID:163
TrivialName: PA14_06000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06000
PAO1 Ortholog Locus:PA0459
Sequence Length:2553
Protein Length:850
Start: 531095
Stop: 533647
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03848.1|AE004483_6 (AE004483) probable ClpA/B protease ATP binding subunit [Pseudomonas aeruginosa PAO1]
Identities = 847/850 (99%), Positives = 848/850 (99%)
Sequence:
GTGGACATCGCCGAGTACTTCAGCAAGCAGACCACCGAGTACCTGCAACGCGCCGCGCAGGTCGCCGCCGAA
TTCGGCAAGCGCGAAGTGGACACCGAGCACCTGCTCTACGCCCTGGCCGACGCCGATGTGGTGCAGGCGGTG
CTCAAGCAGTTCGGCCTGTCGCCGGCCGACCTCAAGCAGTACATCGAGGCCAACGCTGTGCGCGGCGCCAGC
AAGGGCGAGGCGAGCGAGGACATGACCATCTCGCCGCGGGTGAAGAGCGCCTTGCAGCACGCCTTCGCCCTG
TCCCGCGAACTCGGCCACAGCTATGTCGGCCCCGAGCACCTGTTGCTCGGCCTGGCGGCGGTGCCGGACAGC
TTCGCCGGGACGCTCCTGAAGAAGTACGGCCTGACCGAGCAGGCGCTACGGCAGAAAGCGGTCAAGGTGGTC
GGCAAGGGCGCCGAGGACGGCCGCGTGGACGGCCCGAGCAACACTCCGCAACTGGACAAGTTCAGCCGCGAC
CTGACCCGGCTGGCCCGCGAAGGCAAGCTCGATCCGGTGATCGGCCGCTCGAAGGAAGTCGAGACCACCATC
GAGGTGCTCGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGAGTCGGCAAGACCGCCATC
GTCGAAGGCCTGGCCCAGCGCATGGTCCAGGGCGAGGTGCCGGAGGTGCTGCGCGACAAGCGTCTGGTCGAA
CTGAACATCAACGCCATGGTCGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAACGCCTCAAGCAGGTGATG
GACGAACTGCAGGCGGCGCAGAGCGAGATCATCCTGTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGC
CAGGGCGGCGGCGAAGGCGGGCTGGACGTGGCCAACGTGCTGAAGCCGGCGATGGCGCGCGGCGAGATGAAC
CTGATCGGCGCCACCACCCTCAACGAGTACCAGAAGTACATCGAGAAGGACGCCGCGCTGGAGCGGCGCTTC
CAGCCGGTGTTCGTCCCCGAGCCGACGGTGGAGCAGACCATCTCCATCCTCCGTGGCCTGCGCGACAAGCTC
GAAGGCCACCACAAGGTGACCATCCGCGACGAGGCCTTCGTCGCCGCCGCCGAGCTGTCCGACCGCTATATC
GGCAACCGCTTCCTGCCGGACAAGGCCATCGACCTGATCGACCAGGCCGCCGCCCGCGTGCGCATCGCCAGC
ACCTCGCGGCCGGCCGAGATCCAGGAACTGGAGGCCGAGCTGGCGCAGCTCAAGCGCGAGCAGGACTACGCC
GCCAGCCGCAAGTGGTACGACGAGGCGAAGGTCTTCGAGAAACGCATCCAGGAACGCAAGGAACACCTCGAG
CAGATCACCGAGCGCTGGCAGCAGACCCAGGGGTCGAAGACCGAGGAGGTGCGGGTCGAGGACATCGCCGAG
ATCATCTCCAAGCTCACCGGCATCCCGGTCACCGAACTGACCGCCGAGGAGCGCGAGAAGCTCCTGCAGATG
GAAGAGCGCCTGCACCAGCGGGTGATCGGCCAGCAGGAAGCGATCACCGCGGTCAGCGACGCCGTGCGCCTG
GCCCGCGCCGGGCTGCGCCAGGGCAGCCGGCCGATCGCCACCTTCCTGTTCCTCGGCCCGACCGGGGTGGGC
AAGACCGAGCTGGCCAAGGCCCTGGCCGAGGTGGTGTTCGGCGACGAAGACGCGATGATCCGCATCGACATG
AGCGAATACATGGAGCGCCACGCGGTGTCCCGGCTGATCGGTGCGCCGCCGGGCTACGTCGGCTACGACGAG
GGCGGCCAGCTCACCGAGCGGGTGCGCCGGCGGCCGTACAGCGTGATCCTGCTCGACGAGATCGAGAAGGCC
CACGCCGACGTCAACAACATCCTCCTGCAGGTGTTCGACGACGGCCGCCTGACCGACGGCAAGGGGCGCGTG
GTGGACTTCACCAACACCATCATCATCGCCACCAGCAACCTCGGCTCCGAGCTGATCATGAAGAACGCCCAG
GCCGGCGAGTTCGCCCAGCCGCCGGAGAAGCTCAAGCGCGAACTGATGACTACCCTGCGCGGGCATTTCCGC
CCGGAATTCCTCAACCGCCTCGACGAGGTGATCGTCTTCGAGTCGTTGAGCAAGGCGCAGATCGAGGACATC
GTCCGCCTGCAACTGGAGCGGGTGAAGCGCGCCGCGCACGCCCAGGACATCTACCTGCACATCGACGACAGC
CTGGTCGGCCACCTCGCCGAAGAGGCCTACCAGCCGGAGTTCGGCGCCCGCGAACTGAAGCGGCAGATCCGC
CAGCAACTGGAGACGCGCCTGGCCACGGCGATGCTCAAGGGCGAGGTGAAGGAGGGCGAGACGGTCACCTTC
TTCTACGACGCCAAGGACGGCGTCGGCTACCGCAAGGGCGCCGCGCCGAAGCCGGCGGCACGCAAGAAGTCC
GGTGCCGGCGAGACACCCAAGGGCCGCGCGACGGCGGCGAGGAAGCCGGCGGCGAAGAAAGGCGCCGCCGCC
AAGGGCAAGGCCGACAAGCCGAAGACCAAGTGA
Translation:
MDIAEYFSKQTTEYLQRAAQVAAEFGKREVDTEHLLYALADADVVQAVLKQFGLSPADLKQYIEANAVRGAS
KGEASEDMTISPRVKSALQHAFALSRELGHSYVGPEHLLLGLAAVPDSFAGTLLKKYGLTEQALRQKAVKVV
GKGAEDGRVDGPSNTPQLDKFSRDLTRLAREGKLDPVIGRSKEVETTIEVLARRKKNNPVLIGEPGVGKTAI
VEGLAQRMVQGEVPEVLRDKRLVELNINAMVAGAKYRGEFEERLKQVMDELQAAQSEIILFIDEVHTIVGAG
QGGGEGGLDVANVLKPAMARGEMNLIGATTLNEYQKYIEKDAALERRFQPVFVPEPTVEQTISILRGLRDKL
EGHHKVTIRDEAFVAAAELSDRYIGNRFLPDKAIDLIDQAAARVRIASTSRPAEIQELEAELAQLKREQDYA
ASRKWYDEAKVFEKRIQERKEHLEQITERWQQTQGSKTEEVRVEDIAEIISKLTGIPVTELTAEEREKLLQM
EERLHQRVIGQQEAITAVSDAVRLARAGLRQGSRPIATFLFLGPTGVGKTELAKALAEVVFGDEDAMIRIDM
SEYMERHAVSRLIGAPPGYVGYDEGGQLTERVRRRPYSVILLDEIEKAHADVNNILLQVFDDGRLTDGKGRV
VDFTNTIIIATSNLGSELIMKNAQAGEFAQPPEKLKRELMTTLRGHFRPEFLNRLDEVIVFESLSKAQIEDI
VRLQLERVKRAAHAQDIYLHIDDSLVGHLAEEAYQPEFGARELKRQIRQQLETRLATAMLKGEVKEGETVTF
FYDAKDGVGYRKGAAPKPAARKKSGAGETPKGRATAARKPAAKKGAAAKGKADKPKTK*
AnnotationID:173GeneID:163
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:03
Gene Name:
Confidence Code:3
GeneProduct:putative ClpA/B protease ATP binding subunit
Cell Localization:()
Synonyms:clpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0542
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68923.1|AE016523_12 (AE016786) chaperone-associated ATPase, putative [Pseudomonas
           putida KT2440]
          Length = 940

 Score = 1075 bits (2781), Expect = 0.0
 Identities = 551/809 (68%), Positives = 661/809 (81%), Gaps = 5/809 (0%)

>gb|AAP07184.1| (AE016998) Negative regulator of genetic competence clpC/mecB
           [Bacillus cereus ATCC 14579]
          Length = 811

 Score =  806 bits (2082), Expect = 0.0
 Identities = 416/796 (52%), Positives = 568/796 (71%), Gaps = 16/796 (2%)








 
Structural Features:
COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 786 residues,  98.0% aligned
Score =  911 bits (2357), Expect = 0.0
Identities = 428/785 (54%), Positives = 558/785 (71%), Gaps = 15/785 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14071




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17471




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38076




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:163_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:163
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
296
                           PA0459_tr
                           translation of PA0459
                           850
                           99.64
                           99.76
                           0
                           4229.0
     

     
     
18900
                           gb|AAG03848.1|AE004483_6
                           (AE004483) probable ClpA/B protease ATP binding subunit [Pseudomonas aeruginosa PAO1]
                           850
                           99.52
                           99.76
                           0
                           4226.0
     

     
     
18901
                           gb|AAN68923.1|AE016523_12
                           (AE016786) chaperone-associated ATPase, putative [Pseudomonas putida KT2440]
                           975
                           56.51
                           68.00
                           160
                           2782.0
     

     
     
18910
                           gb|AAM25468.1|
                           (AE013175) ATPases with chaperone activity, ATP-binding subunit [Thermoanaerobacter tengcongensis]
                           869
                           48.56
                           66.05
                           72
                           2044.0
     

     
     
18903
                           gb|AAP24135.1|
                           (AE017024) negative regulator of genetic competence ClpC/MecB [Bacillus anthracis str. Ames]
                           860
                           48.48
                           66.86
                           59
                           2078.0
     

     






      

          
GC ORFID: 43165How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0459Glimmer Score: 

          
Start: 6332437Stop: 6334989

          
Length: 2553


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0459 translation of PA0459Homolog Bit Score 1633.0

          
Other Homologs:  t_PA0459 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGACATCGCCGAGTACTTCAGCAAGCAGACCACCGAGTACCTGCAACGCGCCGCGCAGGTCGCCGCCGAA 
TTCGGCAAGCGCGAAGTGGACACCGAGCACCTGCTCTACGCCCTGGCCGACGCCGATGTGGTGCAGGCGGTG 
CTCAAGCAGTTCGGCCTGTCGCCGGCCGACCTCAAGCAGTACATCGAGGCCAACGCTGTGCGCGGCGCCAGC 
AAGGGCGAGGCGAGCGAGGACATGACCATCTCGCCGCGGGTGAAGAGCGCCTTGCAGCACGCCTTCGCCCTG 
TCCCGCGAACTCGGCCACAGCTATGTCGGCCCCGAGCACCTGTTGCTCGGCCTGGCGGCGGTGCCGGACAGC 
TTCGCCGGGACGCTCCTGAAGAAGTACGGCCTGACCGAGCAGGCGCTACGGCAGAAAGCGGTCAAGGTGGTC 
GGCAAGGGCGCCGAGGACGGCCGCGTGGACGGCCCGAGCAACACTCCGCAACTGGACAAGTTCAGCCGCGAC 
CTGACCCGGCTGGCCCGCGAAGGCAAGCTCGATCCGGTGATCGGCCGCTCGAAGGAAGTCGAGACCACCATC 
GAGGTGCTCGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGAGTCGGCAAGACCGCCATC 
GTCGAAGGCCTGGCCCAGCGCATGGTCCAGGGCGAGGTGCCGGAGGTGCTGCGCGACAAGCGTCTGGTCGAA 
CTGAACATCAACGCCATGGTCGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAACGCCTCAAGCAGGTGATG 
GACGAACTGCAGGCGGCGCAGAGCGAGATCATCCTGTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGC 
CAGGGCGGCGGCGAAGGCGGGCTGGACGTGGCCAACGTGCTGAAGCCGGCGATGGCGCGCGGCGAGATGAAC 
CTGATCGGCGCCACCACCCTCAACGAGTACCAGAAGTACATCGAGAAGGACGCCGCGCTGGAGCGGCGCTTC 
CAGCCGGTGTTCGTCCCCGAGCCGACGGTGGAGCAGACCATCTCCATCCTCCGTGGCCTGCGCGACAAGCTC 
GAAGGCCACCACAAGGTGACCATCCGCGACGAGGCCTTCGTCGCCGCCGCCGAGCTGTCCGACCGCTATATC 
GGCAACCGCTTCCTGCCGGACAAGGCCATCGACCTGATCGACCAGGCCGCCGCCCGCGTGCGCATCGCCAGC 
ACCTCGCGGCCGGCCGAGATCCAGGAACTGGAGGCCGAGCTGGCGCAGCTCAAGCGCGAGCAGGACTACGCC 
GCCAGCCGCAAGTGGTACGACGAGGCGAAGGTCTTCGAGAAACGCATCCAGGAACGCAAGGAACACCTCGAG 
CAGATCACCGAGCGCTGGCAGCAGACCCAGGGGTCGAAGACCGAGGAGGTGCGGGTCGAGGACATCGCCGAG 
ATCATCTCCAAGCTCACCGGCATCCCGGTCACCGAACTGACCGCCGAGGAGCGCGAGAAGCTCCTGCAGATG 
GAAGAGCGCCTGCACCAGCGGGTGATCGGCCAGCAGGAAGCGATCACCGCGGTCAGCGACGCCGTGCGCCTG 
GCCCGCGCCGGGCTGCGCCAGGGCAGCCGGCCGATCGCCACCTTCCTGTTCCTCGGCCCGACCGGGGTGGGC 
AAGACCGAGCTGGCCAAGGCCCTGGCCGAGGTGGTGTTCGGCGACGAAGACGCGATGATCCGCATCGACATG 
AGCGAATACATGGAGCGCCACGCGGTGTCCCGGCTGATCGGTGCGCCGCCGGGCTACGTCGGCTACGACGAG 
GGCGGCCAGCTCACCGAGCGGGTGCGCCGGCGGCCGTACAGCGTGATCCTGCTCGACGAGATCGAGAAGGCC 
CACGCCGACGTCAACAACATCCTCCTGCAGGTGTTCGACGACGGCCGCCTGACCGACGGCAAGGGGCGCGTG 
GTGGACTTCACCAACACCATCATCATCGCCACCAGCAACCTCGGCTCCGAGCTGATCATGAAGAACGCCCAG 
GCCGGCGAGTTCGCCCAGCCGCCGGAGAAGCTCAAGCGCGAACTGATGACTACCCTGCGCGGGCATTTCCGC 
CCGGAATTCCTCAACCGCCTCGACGAGGTGATCGTCTTCGAGTCGTTGAGCAAGGCGCAGATCGAGGACATC 
GTCCGCCTGCAACTGGAGCGGGTGAAGCGCGCCGCGCACGCCCAGGACATCTACCTGCACATCGACGACAGC 
CTGGTCGGCCACCTCGCCGAAGAGGCCTACCAGCCGGAGTTCGGCGCCCGCGAACTGAAGCGGCAGATCCGC 
CAGCAACTGGAGACGCGCCTGGCCACGGCGATGCTCAAGGGCGAGGTGAAGGAGGGCGAGACGGTCACCTTC 
TTCTACGACGCCAAGGACGGCGTCGGCTACCGCAAGGGCGCCGCGCCGAAGCCGGCGGCACGCAAGAAGTCC 
GGTGCCGGCGAGACACCCAAGGGCCGCGCGACGGCGGCGAGGAAGCCGGCGGCGAAGAAAGGCGCCGCCGCC 
AAGGGCAAGGCCGACAAGCCGAAGACCAAGTGA