ViewGene
Locus Name:
GeneID:
Location:

GeneID:1629
TrivialName: PA14_19560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19560
PAO1 Ortholog Locus:PA3444
Sequence Length:1149
Protein Length:382
Start: 1690298
Stop: 1691446
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06832.1|AE004765_5 (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 382/382 (100%), Positives = 382/382 (100%)
Sequence:
ATGAGCCTCGAGATTTTCTGGTTCCTTCCCACCCACGGCGACGGCCACTACCTGGGCACCACCCAGGGCGCC
CGTGCCGTCGACCACGGCTACCTGCAGCAGATCGCCCAGGCCGCCGACCGCCTGGGCTTCGGCGGCGTACTG
ATCCCCACCGGACGTTCCTGCGAGGACTCCTGGCTGGTCGCCGCCTCGCTGATCCCGGTAACCCAGCGCCTG
AAGTTCCTCGTCGCGCTGCGTCCCGGGATCATTTCGCCGACCGTCGCCGCGCGCCAGGCGGCGACCCTGGAC
CGGCTGTCCAACGGCCGCGCGCTGTTCAACCTGGTCACCGGCGGCGATCCCGACGAACTGGCTGGCGACGGC
CTGCACCTGAGCCACGCCGAACGCTACGAGGCGTCGGTCGAATTCACCCGCATCTGGCGTCGCGTGCTGGAG
GGCGAGACCGTCGACTACGCCGGCAAGCACATCCAGGTGAAGGGGGCCAAGCTCCTCTATCCGCCGTTGCAG
CAGCCGCGTCCGCCGCTGTACTTCGGCGGCTCCTCGGAGGCCGCCCAGGACCTCGCCGCCGAGCAGGTCGAG
CTGTACCTGACCTGGGGCGAGCCGCCGGCGGCGGTTGCCGAGAAGATCGCCCAGGTACGCGAGAAGGCCGCC
CGCCAGGGCCGCCAGGTGCGCTTCGGGATCCGCCTGCACGTGATCGTCCGCGAGACCAGCGAGGAAGCCTGG
CAGGCCGCCGATCGCCTGATCGCGCACCTCGACGACGACACCATCGCCCGCGCCCAGGCCTCCCTGGCGCGC
TTCGACTCGGTCGGCCAGCAACGCATGGCCGCGCTGCACGGCGGTTCGCGCGACAACCTGGAAGTCAGCCCC
AATCTCTGGGCCGGCGTCGGCCTGGTACGCGGCGGCGCCGGCACCGCGCTGGTCGGCGACGGACCGACGGTG
GCGGCGCGGGTCAGGGAGTACGCCGAGCTGGGCATCGATACCTTCATCTTCTCCGGCTACCCGCATCTGGAA
GAGTCCTACCGGGTCGCCGAACTGCTGTTCCCGCACCTCGACGTGCAGCGCCCGGCGCAGCCCGAGGGACGC
GGCTATGTCAGCCCGTTCGGCGAGATGGTGGCCAACGACATCCTGCCCCGGCAGGCCGCGCAGAGTTGA
Translation:
MSLEIFWFLPTHGDGHYLGTTQGARAVDHGYLQQIAQAADRLGFGGVLIPTGRSCEDSWLVAASLIPVTQRL
KFLVALRPGIISPTVAARQAATLDRLSNGRALFNLVTGGDPDELAGDGLHLSHAERYEASVEFTRIWRRVLE
GETVDYAGKHIQVKGAKLLYPPLQQPRPPLYFGGSSEAAQDLAAEQVELYLTWGEPPAAVAEKIAQVREKAA
RQGRQVRFGIRLHVIVRETSEEAWQAADRLIAHLDDDTIARAQASLARFDSVGQQRMAALHGGSRDNLEVSP
NLWAGVGLVRGGAGTALVGDGPTVAARVREYAELGIDTFIFSGYPHLEESYRVAELLFPHLDVQRPAQPEGR
GYVSPFGEMVANDILPRQAAQS*
AnnotationID:1638GeneID:1629
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 10:10:45
Gene Name:ssuD
Confidence Code:3
GeneProduct:putative sulfonate monooxygenase
Cell Localization:()
Synonyms:ycbN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative alkanesulfonate monooxygenase
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):
EC Number:1.14.14.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF81710.1|AF250869_2 (AF250869) sulfonate monooxygenase [Buttiauxella sp. PNBS]
          Length = 382

 Score =  717 bits (1852), Expect = 0.0
 Identities = 355/382 (92%), Positives = 369/382 (96%)

>gb|AAF81701.1|AF250866_2 (AF250866) sulfonate monooxygenase [Pseudomonas sp. Tar2A]
          Length = 382

 Score =  712 bits (1838), Expect = 0.0
 Identities = 353/382 (92%), Positives = 368/382 (96%)

>dbj|BAB34441.1| (AP002553) alkanesulfonate monooxygenase [Escherichia coli O157:H7]
          Length = 381

 Score =  618 bits (1594), Expect = e-176
 Identities = 300/382 (78%), Positives = 339/382 (88%), Gaps = 1/382 (0%)






 
Structural Features:
COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin 
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  98.8% aligned
Score =  196 bits (499), Expect = 4e-51
Identities = 133/355 (37%), Positives = 166/355 (46%), Gaps = 32/355 (9%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3261




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20408




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32124




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1629_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1629
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2873
                           PA3444_tr
                           translation of PA3444
                           382
                           99.99
                           99.99
                           0
                           1970.0
     

     
     
89600
                           gb|AAG06832.1|AE004765_5
                           (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           382
                           99.99
                           99.99
                           0
                           1970.0
     

     
     
89601
                           gb|AAF81710.1|AF250869_2
                           (AF250869) sulfonate monooxygenase [Buttiauxella sp. PNBS]
                           382
                           92.93
                           96.59
                           0
                           1852.0
     

     
     
89602
                           gb|AAN65870.1|AE016215_5
                           (AE016774) organosulfonate monooxygenase [Pseudomonas putida KT2440]
                           382
                           92.67
                           96.85
                           0
                           1851.0
     

     
     
89603
                           gb|AAC31905.1|
                           (AF075709) putative FMNH2-dependent monooxygenase [Pseudomonas putida]
                           382
                           92.67
                           96.59
                           0
                           1848.0
     

     






      

          
GC ORFID: 44631How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3444Glimmer Score: 

          
Start: 3263634Stop: 3262486

          
Length: 1149


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3444 translation of PA3444Homolog Bit Score 763.0

          
Other Homologs:  t_PA2356 (ORF: BLASTX 559.0), psyr_15may02_Scaffold1_revised_gene1289 (ORF: BLASTX 555.0), t_PA3444 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTCGAGATTTTCTGGTTCCTTCCCACCCACGGCGACGGCCACTACCTGGGCACCACCCAGGGCGCC 
CGTGCCGTCGACCACGGCTACCTGCAGCAGATCGCCCAGGCCGCCGACCGCCTGGGCTTCGGCGGCGTACTG 
ATCCCCACCGGACGTTCCTGCGAGGACTCCTGGCTGGTCGCCGCCTCGCTGATCCCGGTAACCCAGCGCCTG 
AAGTTCCTCGTCGCGCTGCGTCCCGGGATCATTTCGCCGACCGTCGCCGCGCGCCAGGCGGCGACCCTGGAC 
CGGCTGTCCAACGGCCGCGCGCTGTTCAACCTGGTCACCGGCGGCGATCCCGACGAACTGGCTGGCGACGGC 
CTGCACCTGAGCCACGCCGAACGCTACGAGGCGTCGGTCGAATTCACCCGCATCTGGCGTCGCGTGCTGGAG 
GGCGAGACCGTCGACTACGCCGGCAAGCACATCCAGGTGAAGGGGGCCAAGCTCCTCTATCCGCCGTTGCAG 
CAGCCGCGTCCGCCGCTGTACTTCGGCGGCTCCTCGGAGGCCGCCCAGGACCTCGCCGCCGAGCAGGTCGAG 
CTGTACCTGACCTGGGGCGAGCCGCCGGCGGCGGTTGCCGAGAAGATCGCCCAGGTACGCGAGAAGGCCGCC 
CGCCAGGGCCGCCAGGTGCGCTTCGGGATCCGCCTGCACGTGATCGTCCGCGAGACCAGCGAGGAAGCCTGG 
CAGGCCGCCGATCGCCTGATCGCGCACCTCGACGACGACACCATCGCCCGCGCCCAGGCCTCCCTGGCGCGC 
TTCGACTCGGTCGGCCAGCAACGCATGGCCGCGCTGCACGGCGGTTCGCGCGACAACCTGGAAGTCAGCCCC 
AATCTCTGGGCCGGCGTCGGCCTGGTACGCGGCGGCGCCGGCACCGCGCTGGTCGGCGACGGACCGACGGTG 
GCGGCGCGGGTCAGGGAGTACGCCGAGCTGGGCATCGATACCTTCATCTTCTCCGGCTACCCGCATCTGGAA 
GAGTCCTACCGGGTCGCCGAACTGCTGTTCCCGCACCTCGACGTGCAGCGCCCGGCGCAGCCCGAGGGACGC 
GGCTATGTCAGCCCGTTCGGCGAGATGGTGGCCAACGACATCCTGCCCCGGCAGGCCGCGCAGAGTTGA