ViewGene
Locus Name:
GeneID:
Location:

GeneID:1628
TrivialName: PA14_24010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24010
PAO1 Ortholog Locus:PA3102
Sequence Length:1218
Protein Length:405
Start: 2086376
Stop: 2087593
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06490.1|AE004734_8 (AE004734) general secretion pathway protein F [Pseudomonas aeruginosa PAO1]
Identities = 405/405 (100%), Positives = 405/405 (100%)
Sequence:
ATGGCCGCCTTCGAATACCTCGCCCTCGACCCCAGCGGTCGCCAGCAGAAGGGCGTGCTGGAGGCGGACAGC
GCGCGCCAGGTCCGCCAATTGCTGCGCGAGCGCCAATTGGCGCCGCTCGATGTGAAGCCCACCCGTACCCGC
GAGCAGAGCGGGCAGGGCGGGCGCCTGACGTTCGCCCGCGGACTGTCCGCGCGCGACCTGGCATTGGTGACC
CGGCAACTGGCGACCCTGGTCCAGGCCGCGTTGCCGATCGAGGAGGCGCTGCGCGCCGCCGCGGCGCAGTCC
ACCTCGCAGCGCATCCAGTCGATGCTTCTCGCCGTGCGCGCCAAGGTCCTCGAGGGCCATAGCCTGGCCGGC
AGCCTGCGCGAGTTTCCCACCGCCTTTCCCGAGCTGTACCGGGCGACTGTGGCTGCCGGCGAGCATGCCGGG
CACCTCGGCCCGGTGCTGGAGCAACTTGCCGACTACACCGAGCAGCGCCAGCAGTCGCGGCAGAAGATCCAG
CTGGCGCTGCTCTATCCGGTGATCCTGATGGTCGCTTCGCTGGCCATCGTCGGCTTCCTGCTGGGCTACGTG
GTGCCCGACGTGGTCCGGGTGTTCATCGACAGCGGGCAGACGCTGCCGCTGTTGACCCGCGTGCTGATCGGC
GTTAGCGACTGGGTCAAGGCCTGGGGCGCGCTGGCCTTCGTCGCGGCGATCGGCGGGGTGATCGGCTTCCGC
TACGCGCTACGCAAGGATGCCTTTCGCGAGCGCTGGCATGGCTTCCTGCTGCGCGTGCCGCTGGTCGGTCGG
CTGGTGCGTTCCACCGACACCGCGCGCTTCGCCTCGACCCTGGCGATCCTCACCCGCAGCGGCGTGCCGCTG
GTGGAGGCGCTGGCGATCGCCGCCGAGGTGATCGCCAACCGGATCATCCGCAACGAAGTGGTCAAGGCCGCG
CAGAAGGTCCGCGAGGGCGCCAGCCTGACCCGCTCGCTGGAAGCCACCGGACAGTTCCCGCCGATGATGCTG
CACATGATCGCCAGCGGCGAGCGCTCCGGCGAGCTGGACCAGATGCTGGCGCGCACCGCGCGCAACCAGGAG
AACGACCTGGCGGCGCAGATCGGCCTGATGGTCGGCCTGTTCGAACCGTTCATGCTGATATTCATGGGCGCG
GTGGTGCTGGTCATCGTCCTTGCCATTCTTCTTCCGATCCTTTCTCTCAACCAACTCGTGGGGTAA
Translation:
MAAFEYLALDPSGRQQKGVLEADSARQVRQLLRERQLAPLDVKPTRTREQSGQGGRLTFARGLSARDLALVT
RQLATLVQAALPIEEALRAAAAQSTSQRIQSMLLAVRAKVLEGHSLAGSLREFPTAFPELYRATVAAGEHAG
HLGPVLEQLADYTEQRQQSRQKIQLALLYPVILMVASLAIVGFLLGYVVPDVVRVFIDSGQTLPLLTRVLIG
VSDWVKAWGALAFVAAIGGVIGFRYALRKDAFRERWHGFLLRVPLVGRLVRSTDTARFASTLAILTRSGVPL
VEALAIAAEVIANRIIRNEVVKAAQKVREGASLTRSLEATGQFPPMMLHMIASGERSGELDQMLARTARNQE
NDLAAQIGLMVGLFEPFMLIFMGAVVLVIVLAILLPILSLNQLVG*
AnnotationID:1637GeneID:1628
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:27
Gene Name:xcpS
Confidence Code:1
GeneProduct:general secretion pathway protein F
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:Type II secretory pathway, component PulF
Functional Category Confidence Code:5
COGs:COG1459
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC83357.1| (AF092918) outer membrane secretion protein S [Pseudomonas
           alcaligenes]
          Length = 404

 Score =  613 bits (1581), Expect = e-175
 Identities = 325/405 (80%), Positives = 358/405 (88%), Gaps = 1/405 (0%)

>gb|AAF95871.1| (AE004338) general secretion pathway protein F [Vibrio cholerae]
          Length = 406

 Score =  392 bits (1007), Expect = e-108
 Identities = 196/404 (48%), Positives = 282/404 (69%)








 
Structural Features:
COG1459, PulF, Type II secretory pathway, component PulF 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 397 residues, 100.0% aligned
Score =  379 bits (974), Expect = 4e-106
Identities = 181/405 (44%), Positives = 260/405 (64%), Gaps = 8/405 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3259




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20406




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32422




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1628_cdd.html


    		




 
URL:

















    ReferenceID:33465




  
Author/Investigator(s):
        Tommassen J, Filloux A, Bally M, Murgier M, Lazdunski A.





  
Title:
        Protein secretion in Pseudomonas aeruginosa.




  
PubMed:
        1389315


MedLine:
        




    
Source:
FEMS Microbiol Rev. 1992 Sep;9(1):73-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1389315

















    ReferenceID:33466




  
Author/Investigator(s):
        Bally M, Filloux A, Akrim M, Ball G, Lazdunski A, Tommassen J.





  
Title:
        Protein secretion in Pseudomonas aeruginosa: characterization of seven xcp genes and processing of secretory apparatus components by prepilin peptidase.




  
PubMed:
        1588814


MedLine:
        




    
Source:
Mol Microbiol. 1992 May;6(9):1121-31.
Erratum in:
    * Mol Microbiol 1992 Sep;6(18):2745.








    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1588814









           
Homologs By Global Alignment 

           

       



     
Gene ID:1628
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2871
                           PA3102_tr
                           translation of PA3102
                           405
                           99.99
                           99.99
                           0
                           1970.0
     

     
     
89561
                           gb|AAG06490.1|AE004734_8
                           (AE004734) general secretion pathway protein F [Pseudomonas aeruginosa PAO1]
                           405
                           99.99
                           99.99
                           0
                           1970.0
     

     
     
89562
                           emb|CAA44534.1|
                           (X62666) secretion protein XcpS [Pseudomonas aeruginosa]
                           405
                           99.99
                           99.99
                           0
                           1970.0
     

     
     
89563
                           gb|AAC83357.1|
                           (AF092918) outer membrane secretion protein S [Pseudomonas alcaligenes]
                           405
                           80.24
                           88.39
                           1
                           1583.0
     

     
     
89566
                           emb|CAA49647.1|
                           (X70049) outF [Pectobacterium carotovorum]
                           408
                           52.20
                           68.13
                           3
                           1003.0
     

     






      

          
GC ORFID: 44630How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3102Glimmer Score: 

          
Start: 2867555Stop: 2866338

          
Length: 1218


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3102 translation of PA3102Homolog Bit Score 763.0

          
Other Homologs:  t_PA0687 (ORF: BLASTX 328.0), t_PA3102 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGCCTTCGAATACCTCGCCCTCGACCCCAGCGGTCGCCAGCAGAAGGGCGTGCTGGAGGCGGACAGC 
GCGCGCCAGGTCCGCCAATTGCTGCGCGAGCGCCAATTGGCGCCGCTCGATGTGAAGCCCACCCGTACCCGC 
GAGCAGAGCGGGCAGGGCGGGCGCCTGACGTTCGCCCGCGGACTGTCCGCGCGCGACCTGGCATTGGTGACC 
CGGCAACTGGCGACCCTGGTCCAGGCCGCGTTGCCGATCGAGGAGGCGCTGCGCGCCGCCGCGGCGCAGTCC 
ACCTCGCAGCGCATCCAGTCGATGCTTCTCGCCGTGCGCGCCAAGGTCCTCGAGGGCCATAGCCTGGCCGGC 
AGCCTGCGCGAGTTTCCCACCGCCTTTCCCGAGCTGTACCGGGCGACTGTGGCTGCCGGCGAGCATGCCGGG 
CACCTCGGCCCGGTGCTGGAGCAACTTGCCGACTACACCGAGCAGCGCCAGCAGTCGCGGCAGAAGATCCAG 
CTGGCGCTGCTCTATCCGGTGATCCTGATGGTCGCTTCGCTGGCCATCGTCGGCTTCCTGCTGGGCTACGTG 
GTGCCCGACGTGGTCCGGGTGTTCATCGACAGCGGGCAGACGCTGCCGCTGTTGACCCGCGTGCTGATCGGC 
GTTAGCGACTGGGTCAAGGCCTGGGGCGCGCTGGCCTTCGTCGCGGCGATCGGCGGGGTGATCGGCTTCCGC 
TACGCGCTACGCAAGGATGCCTTTCGCGAGCGCTGGCATGGCTTCCTGCTGCGCGTGCCGCTGGTCGGTCGG 
CTGGTGCGTTCCACCGACACCGCGCGCTTCGCCTCGACCCTGGCGATCCTCACCCGCAGCGGCGTGCCGCTG 
GTGGAGGCGCTGGCGATCGCCGCCGAGGTGATCGCCAACCGGATCATCCGCAACGAAGTGGTCAAGGCCGCG 
CAGAAGGTCCGCGAGGGCGCCAGCCTGACCCGCTCGCTGGAAGCCACCGGACAGTTCCCGCCGATGATGCTG 
CACATGATCGCCAGCGGCGAGCGCTCCGGCGAGCTGGACCAGATGCTGGCGCGCACCGCGCGCAACCAGGAG 
AACGACCTGGCGGCGCAGATCGGCCTGATGGTCGGCCTGTTCGAACCGTTCATGCTGATATTCATGGGCGCG 
GTGGTGCTGGTCATCGTCCTTGCCATTCTTCTTCCGATCCTTTCTCTCAACCAACTCGTGGGGTAA