ViewGene
Locus Name:
GeneID:
Location:

GeneID:1627
TrivialName: PA14_42750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42750
PAO1 Ortholog Locus:PA1682
Sequence Length:1152
Protein Length:383
Start: 3802800
Stop: 3801649
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05071.1|AE004595_10 (AE004595) probable MFS metabolite transporter [Pseudomonas aeruginosa PAO1]
Identities = 380/383 (99%), Positives = 382/383 (99%)
Sequence:
GTGACCAGCGCGGTTCCCTACTGGCGCCTGTCCAGCTTCTATTTCTTCTATTTCAGCCTGCTCGGCGCCACG
GCGCCGTTCCTCGCCCTGTATTTCCATCACCTGGGCTTCCCCAGCCCGCGCATCGGCGAGCTGGTGGCGATT
CCCATGCTGATGCGTTGCGTCGCGCCCAACCTGTGGGGCTGGCTGGGCGACCGCAGCGGCCAGCGCCTGGCC
ATCGTGCGCTTCGGCGCGGTATGCACGGCGCTGGGCTTCTCGCTGATCTTCGTCAGCCACAGCTACGCCTGG
CTGGCCTTGGTGATGGCGTTGCATGCGTTCTTCTGGCATGCCGTGCTACCGCAGTTCGAGGTCATCACCCTG
GCCCACCTGCGCGAGCGCAGCGCCAGCTACAGCCGGATTCGCCTGTGGGGCTCGATCGGTTTCATCTGCACC
GTGGTCGGTCTCGGCGCGCTGTTCGAGCGCCTGAGCCTGGATGTCTACCCGGCGACGCTGCTGGGTATCATG
CTCGGCATCGTGCTGTGCAGCTGGTGGGTGCCCAATGCCCAGCCGGCCCATCGCGAACCGCGCGAAGGCGAG
GGCGGCTTCCTCTCCCAGTTGCGCCGGCCGGGCGTGCTGGCGTTCTACCTGTGCGTGTGCCTGATGCAGCTG
TCCCATGGGCCGTACTACACCTTCCTGACCCTGCACCTGGAATCGCTGGGCTACAGCCGGGCGCTGATCGGT
CTGCTCTGGGCGCTGGGGGTGGTCGCCGAGGTCATGTTGTTCCTCGCCATGCCACGCCTGCTGCAACGTTTC
AGCCTGCGCCAGGTGCTGGCCGCGAGCTTCCTGCTGGCGTCGTTGCGCTGGCTGCTTCTCGGCAACCTGGCC
GACAGCCTGGCGCTGCTGGTCTTTGCTCAGACGCTGCATGCCGCCACCTTCGGCAGTTTTCATGCGGCTGCC
ATCCATTTCGTGCAGCGTAGCTTCGGCCCGCGCCAGCAGGGCCAGGGCCAGGCCCTGTATGCTGCGCTGGCC
GGTACCGGCGGAGCCCTGGGCGCGCTGTATTCCGGCTATAGCTGGAACAGCCTGGGCCCTGCCTGGACCTTC
GCCATCGCCAGCCTGGCAGCCTTGCTGGCAGCCGCTATCATCAGTACCCGTTTGCAAGAGGTGCGGGCATGA
Translation:
MTSAVPYWRLSSFYFFYFSLLGATAPFLALYFHHLGFPSPRIGELVAIPMLMRCVAPNLWGWLGDRSGQRLA
IVRFGAVCTALGFSLIFVSHSYAWLALVMALHAFFWHAVLPQFEVITLAHLRERSASYSRIRLWGSIGFICT
VVGLGALFERLSLDVYPATLLGIMLGIVLCSWWVPNAQPAHREPREGEGGFLSQLRRPGVLAFYLCVCLMQL
SHGPYYTFLTLHLESLGYSRALIGLLWALGVVAEVMLFLAMPRLLQRFSLRQVLAASFLLASLRWLLLGNLA
DSLALLVFAQTLHAATFGSFHAAAIHFVQRSFGPRQQGQGQALYAALAGTGGALGALYSGYSWNSLGPAWTF
AIASLAALLAAAIISTRLQEVRA*
AnnotationID:1636GeneID:1627
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:57
Gene Name:
Confidence Code:3
GeneProduct:putative MFS metabolite transporter
Cell Localization:()
Synonyms:PA1682
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67450.1|AE016372_5 (AE016780) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 384

 Score =  575 bits (1483), Expect = e-163
 Identities = 283/378 (74%), Positives = 315/378 (83%)

>gb|AAO55562.1| (AE016863) transporter, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 389

 Score =  567 bits (1462), Expect = e-161
 Identities = 277/378 (73%), Positives = 316/378 (83%), Gaps = 2/378 (0%)

>gb|AAN56086.1|AE015744_7 (AE015744) major facilitator family protein, putative [Shewanella
           oneidensis MR-1]
          Length = 389

 Score =  265 bits (678), Expect = 3e-70
 Identities = 145/364 (39%), Positives = 217/364 (59%), Gaps = 8/364 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14399




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20404




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37175




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1627_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1627
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2870
                           PA1682_tr
                           translation of PA1682
                           383
                           99.21
                           99.73
                           0
                           1969.0
     

     
     
89558
                           gb|AAG05071.1|AE004595_10
                           (AE004595) probable MFS metabolite transporter [Pseudomonas aeruginosa PAO1]
                           383
                           98.95
                           99.73
                           0
                           1966.0
     

     
     
89559
                           gb|AAN67450.1|AE016372_5
                           (AE016780) membrane protein, putative [Pseudomonas putida KT2440]
                           385
                           73.50
                           81.81
                           3
                           1481.0
     

     
     
89560
                           gb|AAO55562.1|
                           (AE016863) transporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           389
                           71.46
                           81.74
                           6
                           1458.0
     

     






      

          
GC ORFID: 44629How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1682Glimmer Score: 

          
Start: 1151109Stop: 1152260

          
Length: 1152


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1682 translation of PA1682Homolog Bit Score 763.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene856 (ORF: BLASTX 568.0), t_PA1682 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCAGCGCGGTTCCCTACTGGCGCCTGTCCAGCTTCTATTTCTTCTATTTCAGCCTGCTCGGCGCCACG 
GCGCCGTTCCTCGCCCTGTATTTCCATCACCTGGGCTTCCCCAGCCCGCGCATCGGCGAGCTGGTGGCGATT 
CCCATGCTGATGCGTTGCGTCGCGCCCAACCTGTGGGGCTGGCTGGGCGACCGCAGCGGCCAGCGCCTGGCC 
ATCGTGCGCTTCGGCGCGGTATGCACGGCGCTGGGCTTCTCGCTGATCTTCGTCAGCCACAGCTACGCCTGG 
CTGGCCTTGGTGATGGCGTTGCATGCGTTCTTCTGGCATGCCGTGCTACCGCAGTTCGAGGTCATCACCCTG 
GCCCACCTGCGCGAGCGCAGCGCCAGCTACAGCCGGATTCGCCTGTGGGGCTCGATCGGTTTCATCTGCACC 
GTGGTCGGTCTCGGCGCGCTGTTCGAGCGCCTGAGCCTGGATGTCTACCCGGCGACGCTGCTGGGTATCATG 
CTCGGCATCGTGCTGTGCAGCTGGTGGGTGCCCAATGCCCAGCCGGCCCATCGCGAACCGCGCGAAGGCGAG 
GGCGGCTTCCTCTCCCAGTTGCGCCGGCCGGGCGTGCTGGCGTTCTACCTGTGCGTGTGCCTGATGCAGCTG 
TCCCATGGGCCGTACTACACCTTCCTGACCCTGCACCTGGAATCGCTGGGCTACAGCCGGGCGCTGATCGGT 
CTGCTCTGGGCGCTGGGGGTGGTCGCCGAGGTCATGTTGTTCCTCGCCATGCCACGCCTGCTGCAACGTTTC 
AGCCTGCGCCAGGTGCTGGCCGCGAGCTTCCTGCTGGCGTCGTTGCGCTGGCTGCTTCTCGGCAACCTGGCC 
GACAGCCTGGCGCTGCTGGTCTTTGCTCAGACGCTGCATGCCGCCACCTTCGGCAGTTTTCATGCGGCTGCC 
ATCCATTTCGTGCAGCGTAGCTTCGGCCCGCGCCAGCAGGGCCAGGGCCAGGCCCTGTATGCTGCGCTGGCC 
GGTACCGGCGGAGCCCTGGGCGCGCTGTATTCCGGCTATAGCTGGAACAGCCTGGGCCCTGCCTGGACCTTC 
GCCATCGCCAGCCTGGCAGCCTTGCTGGCAGCCGCTATCATCAGTACCCGTTTGCAAGAGGTGCGGGCATGA