ViewGene
Locus Name:
GeneID:
Location:

GeneID:1626
TrivialName: PA14_43130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43130
PAO1 Ortholog Locus:PA1654
Sequence Length:1167
Protein Length:388
Start: 3842844
Stop: 3841678
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05043.1|AE004593_5 (AE004593) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 386/388 (99%), Positives = 386/388 (99%)
Sequence:
ATGGCCTTCTCTGAACGCATCTCCCGCCTGAAAAGCTCCTTGATCCGCGAAATCCTTGCCGCGGCGCAGCGT
CCGGAGGTGATGTCGTTCGCCGGCGGGCTGCCGGCCGAGCCGATGCTGCCGAAGGTGCAGTGGGAGCAGATG
CCGGCCTCCATGGGCCAGTACGGCATGAGCGAAGGCGAGCCTGCCCTGCGCGAAGCCATCGCCGCCGAAGCG
CGCGCCCTCGGCGTCCCCTGCGAGGCGAGCCAGGTGCTGATCGTCAGCGGTTCGCAGCAGACCCTCGACCTG
GCCAGCAAGCTGTTCATCGATCCGGGCACCGAGGTGCTGCTCGAGGCGCCGACCTACCTCGCCGCGCTACAG
GCCTTCCAATTGTTCGGCGCCGATTGCGTGACCGTGCCGCTGGGTGCCGAGGGCCCCGACCTGGTTGCCCTG
CGGCAGCGCCTGGAGCGACACAAGCCGGCTTTCGCCTACCTGATCCCGACTTTCCAGAATCCGTCCGGCGTG
CGCTACAGCGAGGGACGCCGCGACGCGGTGGCGGCGCTGCTCGACGAATTCGGCGTGACCCTGATCGAAGAC
GAACCCTATCGCGAACTGGTGTTCGACGAGGGCCGCGCAACCCCGCTGGTCAGCCGCCTGCGCAAGTCCAGC
TGGATCTATACCGGCACGGTGTCGAAAACCCTGCTGCCGGGCCTGCGCGTCGGTTTCCTGATCGCCACCCCG
GACCTGTTCCCGCACCTGCTGCGGCTGAAACAGTCGGCCGACCTGCATACCAACCGGGTAGGGCAGTGGCAG
GCGCTGCAATGGTTCGGCAGCGAGGCCTATCGCCAGCACCTGGCCGAACTGCGCGAGTTCTACCGGGTCCGC
CGCGACGCCATGCAGGAGGCCCTGCTGGAGCACTTCGGCGAGCTGGCCGAATGGAATATCCCGGAGGGCGGG
CTGTTCTTCTGGCTGACTCTCAGGCAGCCGCTGGATACCCGCACCCTGCTCCAGCCGGCGCTGGCCGCCGAT
GTCGCATTCATGCCCGGCGAACCTTTCTTCGCCGAGCCGGAGCAGAACCTCGGGCGTCTGCGGCTGAACTTC
AGCCACGTCGCCCCGGAGCGCCTGCACGAAGGCCTGCGGCGCCTGGCCAAGGTCGTCCGCGATGCCCAGGCC
GCCGAAGCGGCCTGA
Translation:
MAFSERISRLKSSLIREILAAAQRPEVMSFAGGLPAEPMLPKVQWEQMPASMGQYGMSEGEPALREAIAAEA
RALGVPCEASQVLIVSGSQQTLDLASKLFIDPGTEVLLEAPTYLAALQAFQLFGADCVTVPLGAEGPDLVAL
RQRLERHKPAFAYLIPTFQNPSGVRYSEGRRDAVAALLDEFGVTLIEDEPYRELVFDEGRATPLVSRLRKSS
WIYTGTVSKTLLPGLRVGFLIATPDLFPHLLRLKQSADLHTNRVGQWQALQWFGSEAYRQHLAELREFYRVR
RDAMQEALLEHFGELAEWNIPEGGLFFWLTLRQPLDTRTLLQPALAADVAFMPGEPFFAEPEQNLGRLRLNF
SHVAPERLHEGLRRLAKVVRDAQAAEAA*
AnnotationID:1635GeneID:1626
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:15
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:()
Synonyms:PA1654
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1167,COG0436
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM85933.1|AE013840_5 (AE013840) putative aminotransferase [Yersinia pestis KIM]
          Length = 395

 Score =  360 bits (925), Expect = 6e-99
 Identities = 188/379 (49%), Positives = 248/379 (65%), Gaps = 6/379 (1%)

>gb|AAM36720.1| (AE011819) valine-pyruvate aminotransferase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 427

 Score =  265 bits (677), Expect = 4e-70
 Identities = 162/389 (41%), Positives = 217/389 (55%), Gaps = 11/389 (2%)






 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues,  85.6% aligned
Score =  333 bits (856), Expect = 2e-92
Identities = 163/393 (41%), Positives = 217/393 (55%), Gaps = 10/393 (2%)

COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  99.2% aligned
Score =  168 bits (427), Expect = 1e-42
Identities = 112/394 (28%), Positives = 181/394 (45%), Gaps = 22/394 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20402




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37204




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1626_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1626
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2869
                           PA1654_tr
                           translation of PA1654
                           388
                           99.48
                           99.48
                           0
                           1969.0
     

     
     
89549
                           gb|AAG05043.1|AE004593_5
                           (AE004593) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           388
                           99.48
                           99.48
                           0
                           1969.0
     

     
     
89551
                           emb|CAA21365.1|
                           (AL031866) yp23 [Yersinia pestis]
                           397
                           47.35
                           62.46
                           20
                           925.0
     

     
     
89552
                           emb|CAC90751.1|
                           (AJ414150) putative aminotransferase [Yersinia pestis CO92]
                           397
                           47.35
                           62.46
                           20
                           925.0
     

     
     
89550
                           gb|AAM85933.1|AE013840_5
                           (AE013840) putative aminotransferase [Yersinia pestis KIM]
                           406
                           46.30
                           61.08
                           29
                           925.0
     

     






      

          
GC ORFID: 44628How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1654Glimmer Score: 

          
Start: 1111065Stop: 1112231

          
Length: 1167


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1654 translation of PA1654Homolog Bit Score 763.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene845 (ORF: BLASTX 621.0), t_PA1654 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTTCTCTGAACGCATCTCCCGCCTGAAAAGCTCCTTGATCCGCGAAATCCTTGCCGCGGCGCAGCGT 
CCGGAGGTGATGTCGTTCGCCGGCGGGCTGCCGGCCGAGCCGATGCTGCCGAAGGTGCAGTGGGAGCAGATG 
CCGGCCTCCATGGGCCAGTACGGCATGAGCGAAGGCGAGCCTGCCCTGCGCGAAGCCATCGCCGCCGAAGCG 
CGCGCCCTCGGCGTCCCCTGCGAGGCGAGCCAGGTGCTGATCGTCAGCGGTTCGCAGCAGACCCTCGACCTG 
GCCAGCAAGCTGTTCATCGATCCGGGCACCGAGGTGCTGCTCGAGGCGCCGACCTACCTCGCCGCGCTACAG 
GCCTTCCAATTGTTCGGCGCCGATTGCGTGACCGTGCCGCTGGGTGCCGAGGGCCCCGACCTGGTTGCCCTG 
CGGCAGCGCCTGGAGCGACACAAGCCGGCTTTCGCCTACCTGATCCCGACTTTCCAGAATCCGTCCGGCGTG 
CGCTACAGCGAGGGACGCCGCGACGCGGTGGCGGCGCTGCTCGACGAATTCGGCGTGACCCTGATCGAAGAC 
GAACCCTATCGCGAACTGGTGTTCGACGAGGGCCGCGCAACCCCGCTGGTCAGCCGCCTGCGCAAGTCCAGC 
TGGATCTATACCGGCACGGTGTCGAAAACCCTGCTGCCGGGCCTGCGCGTCGGTTTCCTGATCGCCACCCCG 
GACCTGTTCCCGCACCTGCTGCGGCTGAAACAGTCGGCCGACCTGCATACCAACCGGGTAGGGCAGTGGCAG 
GCGCTGCAATGGTTCGGCAGCGAGGCCTATCGCCAGCACCTGGCCGAACTGCGCGAGTTCTACCGGGTCCGC 
CGCGACGCCATGCAGGAGGCCCTGCTGGAGCACTTCGGCGAGCTGGCCGAATGGAATATCCCGGAGGGCGGG 
CTGTTCTTCTGGCTGACTCTCAGGCAGCCGCTGGATACCCGCACCCTGCTCCAGCCGGCGCTGGCCGCCGAT 
GTCGCATTCATGCCCGGCGAACCTTTCTTCGCCGAGCCGGAGCAGAACCTCGGGCGTCTGCGGCTGAACTTC 
AGCCACGTCGCCCCGGAGCGCCTGCACGAAGGCCTGCGGCGCCTGGCCAAGGTCGTCCGCGATGCCCAGGCC 
GCCGAAGCGGCCTGA