ViewGene
Locus Name:
GeneID:
Location:

GeneID:1625
TrivialName: PA14_43160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43160
PAO1 Ortholog Locus:PA1651
Sequence Length:1203
Protein Length:400
Start: 3844318
Stop: 3845520
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05040.1|AE004593_2 (AE004593) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 397/400 (99%), Positives = 397/400 (99%), Gaps = 2/400 (0%)
Sequence:
ATGACCGAAACCACCCAGCCCCAGCCCCAGCCTCGTCTGCGTCCGTTCGCCGACTCCTCTCCCGCCGCCGTG
GTGGCCGGCTTCGTCGCCATGCTCACCGGCTACACCAGCTCGCTGGTACTGATGTTCCAGGCCGGGCAGAAC
GCCGGCCTCAGCAGCGCGCAGATTTCCTCGTGGATCTGGGCCCTGTCGATCGGCATGGGCCTGGCGACCATC
GGCCTGACCCTGCGCTACCGGGTGCCGATCGTGATCGCCTGGTCCACCCCCGGCGCGGCGCTGCTGATCAGC
AGCCTGCCCGGAGTGCCGTACAGCGAGGCGATCGGCGCCTTCATCGTCTGCGCCCTCCTGATCACCCTGTGC
GGCGTCACCGGCAGCTTCGAACGCCTGATGCGCCAGGTTCCCTCCTCGCTGGCCTCGGCGCTGCTGGCCGGG
GTGCTGTTCCGCATCGGCATCGAGATCTGCAACGCCGCCGAGCAACAGACCCTGCTGGTGCTGGCGATGTTC
TTCAGCTATCTGCTGTGCAAACGCTTCTCGCCGCGCTATGCGGTGTTCGCTGCGCTACTGGTGGGGGTGCTG
CTGGCCGGGATACTGGGCCAACTGGACTTCAGCAGGTTCCGCCTGGAACTGGCGGTACCGGAGTGGACCATG
CCGAGCTTCTCCCTGGCCGCCACCATCAGCATCGGCATCCCGTTGTTCATCGTCGCCATGGCGTCGCAGAAC
ATGCCCGGCATCGCCGTGCTGCGCGCCGACGGCTACCAGGTGCCGGCCTCGCCGCTGATCTCGAGCACCGGC
ATCGCCTCGATCCTGCTGGCGCCGTTCGGCTCCCACGGGATCAACCTGGCGGCGATCAGCGCGGCGATCTGC
ACCGGTCCCTCGGCCCACGAGGACCCGCACAAGCGCTATACCGCGGCGCTCTGGTGCGGCTTCTTCAACTGC
GTCGCGGGAACCTTCGGCGCCACCCTGGCAGCGTTGTTCGCGGCGTTCCCCAAGGCACTGGTGCTGTCCATC
GCCGCTATCGCCCTGCTCGGCTCGATCATGAACGGCCTGGCCAATTCGATGGCCGACGAGCGCCAGCGCGAG
GCCGCGCTGGTGACCTTCATGGTCACCGCCTCCGGCTTCACCCTGCTGTCCATCGGCTCGGCGTTCTGGGGC
CTGGTGGCCGGCCTGCTGACTCAGTTCGTGCTCAACTGGCGGCGCGGCTGA
Translation:
MTETTQPQPQPRLRPFADSSPAAVVAGFVAMLTGYTSSLVLMFQAGQNAGLSSAQISSWIWALSIGMGLATI
GLTLRYRVPIVIAWSTPGAALLISSLPGVPYSEAIGAFIVCALLITLCGVTGSFERLMRQVPSSLASALLAG
VLFRIGIEICNAAEQQTLLVLAMFFSYLLCKRFSPRYAVFAALLVGVLLAGILGQLDFSRFRLELAVPEWTM
PSFSLAATISIGIPLFIVAMASQNMPGIAVLRADGYQVPASPLISSTGIASILLAPFGSHGINLAAISAAIC
TGPSAHEDPHKRYTAALWCGFFNCVAGTFGATLAALFAAFPKALVLSIAAIALLGSIMNGLANSMADERQRE
AALVTFMVTASGFTLLSIGSAFWGLVAGLLTQFVLNWRRG*
AnnotationID:1634GeneID:1625
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:11
Gene Name:
Confidence Code:3
GeneProduct:putative benzoate transporter
Cell Localization:()
Synonyms:benE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03594,COG3135
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67439.1|AE016371_5 (AE016780) benzoate transport protein [Pseudomonas putida KT2440]
          Length = 398

 Score =  592 bits (1525), Expect = e-168
 Identities = 301/400 (75%), Positives = 344/400 (86%), Gaps = 4/400 (1%)

>gb|AAM43369.1| (AE012541) benzoate transporter [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 394

 Score =  410 bits (1055), Expect = e-114
 Identities = 209/384 (54%), Positives = 277/384 (72%)

>emb|CAE31209.1| (BX640439) benzoate membrane transport protein [Bordetella
           bronchiseptica]
          Length = 411

 Score =  379 bits (973), Expect = e-104
 Identities = 184/391 (47%), Positives = 265/391 (67%), Gaps = 2/391 (0%)






 
Structural Features:
pfam03594, BenE, Benzoate membrane transport protein.
CD-Length = 378 residues, 100.0% aligned
Score =  445 bits (1145), Expect = 5e-126
Identities = 229/378 (60%), Positives = 288/378 (76%)

COG3135, BenE, Uncharacterized protein involved in benzoate metabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 402 residues,  99.3% aligned
Score =  433 bits (1114), Expect = 2e-122
Identities = 225/400 (56%), Positives = 290/400 (72%), Gaps = 1/400 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3253




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20400




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37212




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1625_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1625
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2868
                           PA1651_tr
                           translation of PA1651
                           400
                           99.25
                           99.25
                           2
                           1971.0
     

     
     
89522
                           gb|AAG05040.1|AE004593_2
                           (AE004593) probable transporter [Pseudomonas aeruginosa PAO1]
                           400
                           99.25
                           99.25
                           2
                           1971.0
     

     
     
89523
                           gb|AAN67439.1|AE016371_5
                           (AE016780) benzoate transport protein [Pseudomonas putida KT2440]
                           402
                           74.87
                           85.57
                           6
                           1528.0
     

     
     
89525
                           gb|AAM39122.1|
                           (AE012082) benzoate transporter [Xanthomonas axonopodis pv. citri str. 306]
                           401
                           52.86
                           68.57
                           9
                           1044.0
     

     
     
89524
                           gb|AAM43369.1|
                           (AE012541) benzoate transporter [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           403
                           52.10
                           68.98
                           12
                           1044.0
     

     






      

          
GC ORFID: 44627How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1651Glimmer Score: 

          
Start: 1109591Stop: 1108389

          
Length: 1203


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1651 translation of PA1651Homolog Bit Score 763.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene565 (ORF: BLASTX 546.0), t_PA1651 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAAACCACCCAGCCCCAGCCCCAGCCTCGTCTGCGTCCGTTCGCCGACTCCTCTCCCGCCGCCGTG 
GTGGCCGGCTTCGTCGCCATGCTCACCGGCTACACCAGCTCGCTGGTACTGATGTTCCAGGCCGGGCAGAAC 
GCCGGCCTCAGCAGCGCGCAGATTTCCTCGTGGATCTGGGCCCTGTCGATCGGCATGGGCCTGGCGACCATC 
GGCCTGACCCTGCGCTACCGGGTGCCGATCGTGATCGCCTGGTCCACCCCCGGCGCGGCGCTGCTGATCAGC 
AGCCTGCCCGGAGTGCCGTACAGCGAGGCGATCGGCGCCTTCATCGTCTGCGCCCTCCTGATCACCCTGTGC 
GGCGTCACCGGCAGCTTCGAACGCCTGATGCGCCAGGTTCCCTCCTCGCTGGCCTCGGCGCTGCTGGCCGGG 
GTGCTGTTCCGCATCGGCATCGAGATCTGCAACGCCGCCGAGCAACAGACCCTGCTGGTGCTGGCGATGTTC 
TTCAGCTATCTGCTGTGCAAACGCTTCTCGCCGCGCTATGCGGTGTTCGCTGCGCTACTGGTGGGGGTGCTG 
CTGGCCGGGATACTGGGCCAACTGGACTTCAGCAGGTTCCGCCTGGAACTGGCGGTACCGGAGTGGACCATG 
CCGAGCTTCTCCCTGGCCGCCACCATCAGCATCGGCATCCCGTTGTTCATCGTCGCCATGGCGTCGCAGAAC 
ATGCCCGGCATCGCCGTGCTGCGCGCCGACGGCTACCAGGTGCCGGCCTCGCCGCTGATCTCGAGCACCGGC 
ATCGCCTCGATCCTGCTGGCGCCGTTCGGCTCCCACGGGATCAACCTGGCGGCGATCAGCGCGGCGATCTGC 
ACCGGTCCCTCGGCCCACGAGGACCCGCACAAGCGCTATACCGCGGCGCTCTGGTGCGGCTTCTTCAACTGC 
GTCGCGGGAACCTTCGGCGCCACCCTGGCAGCGTTGTTCGCGGCGTTCCCCAAGGCACTGGTGCTGTCCATC 
GCCGCTATCGCCCTGCTCGGCTCGATCATGAACGGCCTGGCCAATTCGATGGCCGACGAGCGCCAGCGCGAG 
GCCGCGCTGGTGACCTTCATGGTCACCGCCTCCGGCTTCACCCTGCTGTCCATCGGCTCGGCGTTCTGGGGC 
CTGGTGGCCGGCCTGCTGACTCAGTTCGTGCTCAACTGGCGGCGCGGCTGA