ViewGene

Locus Name:
GeneID:
Location:

GeneID:1624
TrivialName: PA14_12670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12670
PAO1 Ortholog Locus:PA3958
Sequence Length:1140
Protein Length:379
Start: 1087616
Stop: 1086477
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07345.1|AE004813_12 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 378/379 (99%), Positives = 379/379 (100%)
Sequence:
ATGCGCGGCGGCAAGCTCTATGCTCTGGTCCTTTcCAGCATAGTCTCGATTGCGATGTCACTGCCCCGTCTA
CGCAACCTGCTGTTCGTCGGCCTGCTCCTGCTGGTCGGCGGTGCCCTGCTCGCCAGCTACCTGCTGAGCTGG
CAACCCGCCGATCGCGAAGCCGCGCCCCTGCATTGCCAGGGCGCCGCGCCGGCGCTGAAGCCGGGGCAGGCC
CTGAAGGTGATGACCTGGAACATCCAGTACCTGGCCGGCAAGCGCTACGTCTTCTGGGACGACCTGCCGGAT
GCCACCGGCCCGGACCAGCGCCCCACCGCCGAAGACCTGGCGTTCACCCTCGACGAGGTGGTCCGGGTGATC
CGCGACGAGCAGCCGGACCTGGTCCTGCTCCAGGAGATCGACGACGGCTCCAGCGCCACCGACGATCAGGAC
CAACTGGCGCTGATCCAGGAGCGCATCAACGATCTCTACCATTGCAGCGCCCAGGCCTACGAGTGGAAGTCG
GCCTTCGTGCCGACGCCGCACATCTTCGGCAGCGTCGGCCGCAAGCAGGCCACCCTGAGCCGCTATCGCATC
GATAGCGCCGAGCGGCGCCAGTTGCCGCCACGCGATGGCGGGCTGTTCGACCGCCTGTTCGGGCCGCGCCCG
GCGATCCTGGTCAGCCACCTGCCGATCGACGGCGGCGGCGAGCTGGCCGTGCTCAACGCCCGCTTCGACCGC
CCGCAGGCGAACGACGACACCCTCGAGCGCCAGGTCGAGACCACCCGTACGCTGCTCGACGAACTGCAGGCC
AGGCGCACGCCCTGGCTGCTCGGCGGCGACCTCAACCTGCTGCCGCCCGGCCAGTATCCCTACCTGCTGGCG
CCGCTGCGCGCGCCCTACCGGGAAGACAGCGAGCTGGCCGTCCTGAGCGGGCGCTTCCCGATGGTGCCGTCG
CTGGAAGAGGCCAGTGGCGTCGACCAGGTTCGCTGGTACACGCACTTCCCCAACGACCCACGGGTCCAGGGG
CCGGATCGGACCCTCGACTACCTGTTCCACAGCCCCTCGCTGACCCGTCTCGATGCCCGGGTCCGGCGCAGC
GATACGCTGCAGATCTCCAACCACCTGCCGCTCGCCGCGCGCTTCCTGCTGCCCCATTGA
Translation:
MRGGKLYALVLSSIVSIAMSLPRLRNLLFVGLLLLVGGALLASYLLSWQPADREAAPLHCQGAAPALKPGQA
LKVMTWNIQYLAGKRYVFWDDLPDATGPDQRPTAEDLAFTLDEVVRVIRDEQPDLVLLQEIDDGSSATDDQD
QLALIQERINDLYHCSAQAYEWKSAFVPTPHIFGSVGRKQATLSRYRIDSAERRQLPPRDGGLFDRLFGPRP
AILVSHLPIDGGGELAVLNARFDRPQANDDTLERQVETTRTLLDELQARRTPWLLGGDLNLLPPGQYPYLLA
PLRAPYREDSELAVLSGRFPMVPSLEEASGVDQVRWYTHFPNDPRVQGPDRTLDYLFHSPSLTRLDARVRRS
DTLQISNHLPLAARFLLPH*
AnnotationID:1633GeneID:1624
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 17:05:47
Gene Name:
Confidence Code:3
GeneProduct:possible nuclease or phosphatase
Cell Localization:()
Synonyms:PA3958
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03372, COG3568
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|26060 pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family.
This large family of proteins includes magnesium dependent endonucleases and a large number
of phosphatases involved in intracellular signalling.
Genomic Context:
Comment:
ReferenceID:3251
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20398
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1624

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2867 PA3958_tr translation of PA3958 379 99.73 99.99 0 1974.0
89519 gb|AAG07345.1|AE004813_12 (AE004813) hypothetical protein PA3958 [Pseudomonas aeruginosa PAO1] 379 99.73 99.99 0 1974.0
89520 gb|AAO58115.1| (AE016872) endonuclease/exonuclease/phosphatase family protein [Pseudomonas syringae pv. tomato str. DC3000] 383 54.56 67.36 24 1077.0
89521 gb|AAN48613.1|AE011321_4 (AE011321) conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601] 381 36.74 53.28 23 660.0
GC ORFID: 44626How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3958Glimmer Score:
Start: 3866322Stop: 3867461
Length: 1140
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3958 translation of PA3958Homolog Bit Score 764.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5671 (ORF: BLASTX 420.0), t_PA3958 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCGGCGGCAAGCTCTATGCTCTGGTCCTTTcCAGCATAGTCTCGATTGCGATGTCACTGCCCCGTCTA
CGCAACCTGCTGTTCGTCGGCCTGCTCCTGCTGGTCGGCGGTGCCCTGCTCGCCAGCTACCTGCTGAGCTGG
CAACCCGCCGATCGCGAAGCCGCGCCCCTGCATTGCCAGGGCGCCGCGCCGGCGCTGAAGCCGGGGCAGGCC
CTGAAGGTGATGACCTGGAACATCCAGTACCTGGCCGGCAAGCGCTACGTCTTCTGGGACGACCTGCCGGAT
GCCACCGGCCCGGACCAGCGCCCCACCGCCGAAGACCTGGCGTTCACCCTCGACGAGGTGGTCCGGGTGATC
CGCGACGAGCAGCCGGACCTGGTCCTGCTCCAGGAGATCGACGACGGCTCCAGCGCCACCGACGATCAGGAC
CAACTGGCGCTGATCCAGGAGCGCATCAACGATCTCTACCATTGCAGCGCCCAGGCCTACGAGTGGAAGTCG
GCCTTCGTGCCGACGCCGCACATCTTCGGCAGCGTCGGCCGCAAGCAGGCCACCCTGAGCCGCTATCGCATC
GATAGCGCCGAGCGGCGCCAGTTGCCGCCACGCGATGGCGGGCTGTTCGACCGCCTGTTCGGGCCGCGCCCG
GCGATCCTGGTCAGCCACCTGCCGATCGACGGCGGCGGCGAGCTGGCCGTGCTCAACGCCCGCTTCGACCGC
CCGCAGGCGAACGACGACACCCTCGAGCGCCAGGTCGAGACCACCCGTACGCTGCTCGACGAACTGCAGGCC
AGGCGCACGCCCTGGCTGCTCGGCGGCGACCTCAACCTGCTGCCGCCCGGCCAGTATCCCTACCTGCTGGCG
CCGCTGCGCGCGCCCTACCGGGAAGACAGCGAGCTGGCCGTCCTGAGCGGGCGCTTCCCGATGGTGCCGTCG
CTGGAAGAGGCCAGTGGCGTCGACCAGGTTCGCTGGTACACGCACTTCCCCAACGACCCACGGGTCCAGGGG
CCGGATCGGACCCTCGACTACCTGTTCCACAGCCCCTCGCTGACCCGTCTCGATGCCCGGGTCCGGCGCAGC
GATACGCTGCAGATCTCCAACCACCTGCCGCTCGCCGCGCGCTTCCTGCTGCCCCATTGA