ViewGene
Locus Name:
GeneID:
Location:

GeneID:1623
TrivialName: PA14_14010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14010
PAO1 Ortholog Locus:PA3863
Sequence Length:1128
Protein Length:375
Start: 1201879
Stop: 1200752
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07250.1|AE004803_6 (AE004803) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 374/375 (99%), Positives = 375/375 (100%)
Sequence:
ATGATCGAAGCGGATTACCTCGTCATCGGTGCCGGCATCGCCGGCGCATCCACCGGCTACTGGTTGTCGGCC
CACGGCCGGGTCGTGGTGCTGGAGCGCGAGGCGCAGCCCGGCTACCACTCCACCGGCCGCTCCGCCGCGCAC
TACACGGTGGCCTACGGCACACCCCAGGTGCGCGCGCTCACCGCCGCCAGCCGGGCCTTCTTCGACAACCCG
CCGGCCGGCTTCTGCGAGCATCCGCTGCTCAGCCCGCGTCCGGAAATGGTGGTCGACTTCAGCGACGATCCG
GAAGAACTCCGCCGTCAATACGAAAGCGGCAAGGCGCTGGTGCCGCAGATGCGCCTGCTGGACGCGGAACAG
GCCTGCTCGATCGTGCCGGTGCTGCGTCGCGACAAGGTCTTCGGCGCCACCTACGACCCCACCGGCGCCGAC
ATCGATACCGACGCCCTGCACCAGGGCTACCTGCGCGGCATCCGCCGCAACCAGGGGCAGGTCCTGTGCAAC
CACGAAGCGCTGGAGATCCGCCGGGTCGACGGCGCCTGGGAAGTCCGCTGCGACGCCGGCAGCTACCGCGCC
GCGGTGCTGGTCAACGCCGCAGGCGCCTGGTGCGACGCCATCGCCGGGCTGGCCGGCGTCCGCCCGCTGGGC
CTGCAGCCCAAGCGCCGCTCGGCCTTCATCTTCGCCCCGCCGCCGGGCATCGACTGCCACGACTGGCCGATG
CTGGTCAGCCTCGACGAATCCTTCTACCTGAAGCCGGACGCCGGCATGTTGCTCGGCTCGCCGGCCAACGCC
GATCCGGTCGAGGCCCACGACGTACAGCCCGAGCAACTGGACATCGCCACCGGCATGTACCTGATCgaAGAA
gccaCCACCCTCACCATTCGCCGCCCGGAACACACCTGGGCGGGGCTGCGCTCGTTCGTTGCCGACGGCGAC
CTGGTGGCCGGCTACGCCGCCGATGCGGAAGGCTTCTTCTGGGTCGCCGCCCAGGGCGGCTACGGTATCCAG
ACCTCGGCGGCGATGGGCGAGGCCAGCGCCGCGCTGATCCGCCACCAGCCGCTGCCGGCGCACCTGCGCGAG
CACGGCCTGGACGAGGCGATGCTGTCGCCGCGCCGCCTGTCTCCCTGA
Translation:
MIEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNP
PAGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGAD
IDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLG
LQPKRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEE
ATTLTIRRPEHTWAGLRSFVADGDLVAGYAADAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLRE
HGLDEAMLSPRRLSP*
AnnotationID:1632GeneID:1623
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 08:08:00
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid oxidase
Cell Localization:()
Synonyms:PA3863
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665,COG0579
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC49245.1| (AL603645) putative FAD-dependent glycerol-3-phosphate
           dehydrogenase protein [Sinorhizobium meliloti]
          Length = 391

 Score =  313 bits (803), Expect = 8e-85
 Identities = 165/369 (44%), Positives = 217/369 (58%)






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism] 
CD-Length = 387 residues,  97.7% aligned
Score =  162 bits (409), Expect = 2e-40
Identities = 102/378 (26%), Positives = 145/378 (38%), Gaps = 14/378 (3%)

COG0579, Predicted dehydrogenase 
CD-Length = 429 residues,  86.7% aligned
Score =  115 bits (289), Expect = 2e-26
Identities = 81/390 (20%), Positives = 145/390 (37%), Gaps = 59/390 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3249




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20396




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31701




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1623_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1623
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2866
                           PA3863_tr
                           translation of PA3863
                           375
                           99.73
                           99.99
                           0
                           1972.0
     

     
     
89514
                           gb|AAG07250.1|AE004803_6
                           (AE004803) hypothetical protein PA3863 [Pseudomonas aeruginosa PAO1]
                           375
                           99.73
                           99.99
                           0
                           1972.0
     

     
     
89515
                           gb|AAN67859.1|AE016417_7
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           383
                           52.21
                           65.01
                           13
                           993.0
     

     
     
89516
                           emb|CAC49245.1|
                           (AL603645) putative FAD-dependent glycerol-3-phosphate dehydrogenase protein [Sinorhizobium meliloti]
                           391
                           42.45
                           55.75
                           16
                           802.0
     

     
     
89517
                           dbj|BAB52915.1|
                           (AP003009) hypothetical protein [Mesorhizobium loti]
                           388
                           41.49
                           57.21
                           18
                           800.0
     

     






      

          
GC ORFID: 44625How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3863Glimmer Score: 

          
Start: 3752059Stop: 3753186

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3863 translation of PA3863Homolog Bit Score 764.0

          
Other Homologs:  t_PA3863 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAAGCGGATTACCTCGTCATCGGTGCCGGCATCGCCGGCGCATCCACCGGCTACTGGTTGTCGGCC 
CACGGCCGGGTCGTGGTGCTGGAGCGCGAGGCGCAGCCCGGCTACCACTCCACCGGCCGCTCCGCCGCGCAC 
TACACGGTGGCCTACGGCACACCCCAGGTGCGCGCGCTCACCGCCGCCAGCCGGGCCTTCTTCGACAACCCG 
CCGGCCGGCTTCTGCGAGCATCCGCTGCTCAGCCCGCGTCCGGAAATGGTGGTCGACTTCAGCGACGATCCG 
GAAGAACTCCGCCGTCAATACGAAAGCGGCAAGGCGCTGGTGCCGCAGATGCGCCTGCTGGACGCGGAACAG 
GCCTGCTCGATCGTGCCGGTGCTGCGTCGCGACAAGGTCTTCGGCGCCACCTACGACCCCACCGGCGCCGAC 
ATCGATACCGACGCCCTGCACCAGGGCTACCTGCGCGGCATCCGCCGCAACCAGGGGCAGGTCCTGTGCAAC 
CACGAAGCGCTGGAGATCCGCCGGGTCGACGGCGCCTGGGAAGTCCGCTGCGACGCCGGCAGCTACCGCGCC 
GCGGTGCTGGTCAACGCCGCAGGCGCCTGGTGCGACGCCATCGCCGGGCTGGCCGGCGTCCGCCCGCTGGGC 
CTGCAGCCCAAGCGCCGCTCGGCCTTCATCTTCGCCCCGCCGCCGGGCATCGACTGCCACGACTGGCCGATG 
CTGGTCAGCCTCGACGAATCCTTCTACCTGAAGCCGGACGCCGGCATGTTGCTCGGCTCGCCGGCCAACGCC 
GATCCGGTCGAGGCCCACGACGTACAGCCCGAGCAACTGGACATCGCCACCGGCATGTACCTGATCgaAGAA 
gccaCCACCCTCACCATTCGCCGCCCGGAACACACCTGGGCGGGGCTGCGCTCGTTCGTTGCCGACGGCGAC 
CTGGTGGCCGGCTACGCCGCCGATGCGGAAGGCTTCTTCTGGGTCGCCGCCCAGGGCGGCTACGGTATCCAG 
ACCTCGGCGGCGATGGGCGAGGCCAGCGCCGCGCTGATCCGCCACCAGCCGCTGCCGGCGCACCTGCGCGAG 
CACGGCCTGGACGAGGCGATGCTGTCGCCGCGCCGCCTGTCTCCCTGA