ViewGene
Locus Name:
GeneID:
Location:

GeneID:1621
TrivialName: PA14_15260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15260
PAO1 Ortholog Locus:PA3774
Sequence Length:1143
Protein Length:380
Start: 1294221
Stop: 1293079
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07161.1|AE004796_6 (AE004796) probable acetylpolyamine aminohydrolase [Pseudomonas aeruginosa PAO1]
Identities = 378/380 (99%), Positives = 378/380 (99%)
Sequence:
ATGACCCGACGTACCGCTTTCTTCTTCGACGAACTCTGCCTCTGGCACGCCGCCGGCCCGCACGCGCTGACC
CTGCCGGTCGGCGGCTGGGTGCAACCGCCTGCCGCCGCCGGACACGCCGAATCACCGGAAACCAAGCGCCGG
CTGAAAAGCCTGCTCGACGTGTCCGGCCTGACCGCCCGCCTGCAACTGCGCAGCGCACCGCCGGCGAGCGAC
GAGGACCTGCTGCGCGTGCATCCGGCGCACTATCTGGAACGCTTCAAGGCGTTGAGCGACGCCGGCGGCGGC
AGCCTCGGCCAGGACGCGCCGATCGGCCCGGGCAGCTACGAGATCGCCCGGCTCTCCGCCGGCCTGGCCATC
GCCGCGCTGGACGTGGTGCTCGCCGGCGAGGCGGACAACGCCTACTCGCTGTCGCGGCCGCCAGGTCACCAC
TGCCTGCCGGACCAGGCGATGGGCTTCTGTTTCTTCGCCAACATCGCCGTGGCCATCGAGGCGGCCAAGGCG
CGCCACGGCGTCGAGCGGGTCGCGGTGCTGGACTGGGACGTGCACCACGGTAACGGCACCCAGGCGATCTAC
TACCGGCGCGACGACGTGTTGAGCATTTCCCTGCATCAGGACGGCTGCTTCCCGCCTGGCTACAGCGGCGCC
GAAGACATCGGCGAGGATCGCGGTCGTGGCTTCAACCTCAACGTGCCGCTGCTTCCCGGCGGCGGTCACGAC
GCCTACATGCAGGCCATGCAACGCATCGTGTTGCCAGCGCTGGAGCGCTTCCGCCCGCAATTGATCGTGGTC
GCCAGTGGCTTCGACGCCAACGCGGTGGACCCGCTGGCACGCATGCAACTGCACAGCGACAGCTTCCGGGCG
ATGACCGCGATGGTCCGCGACGCGGCCGAGCGGCATGCCGACGGACGCCTGGTGGTGGTCCACGAAGGCGGC
TACTCGGAAGCCTACGTGCCGTTCTGCGGGCTGGCGGTGATCGAAGAACTCAGCGGCGTGCGCAGCGCGGTG
CGCGACCCGCTGCGCGACTTCATCGAGTTGCAGCAGCCCAACGCGGCGTTCCGCGACTTCCAGCGCCAGCGC
CTCGAAGAGCTGGCCGCACAGTTCGGCCTGTGCCCGGCGCAGCCGCTTCAGGCGGCCAGGTAG
Translation:
MTRRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASD
EDLLRVHPAHYLERFKALSDAGGGSLGQDAPIGPGSYEIARLSAGLAIAALDVVLAGEADNAYSLSRPPGHH
CLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDGCFPPGYSGA
EDIGEDRGRGFNLNVPLLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVDPLARMQLHSDSFRA
MTAMVRDAAERHADGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQR
LEELAAQFGLCPAQPLQAAR*
AnnotationID:1630GeneID:1621
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 21:09:44
Gene Name:
Confidence Code:3
GeneProduct:putative deacetylase
Cell Localization:()
Synonyms:PA3774
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0123,pfam00850
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM02268.1| (AE010394) Predicted deacetylase [Methanopyrus kandleri AV19]
          Length = 352

 Score =  218 bits (556), Expect = 4e-56
 Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 7/309 (2%)

>gb|AAB91099.1| (AE001097) acetylpolyamine aminohydrolase (aphA) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 359

 Score =  208 bits (530), Expect = 4e-53
 Identities = 119/304 (39%), Positives = 172/304 (56%), Gaps = 10/304 (3%)








 
Structural Features:
COG0123, AcuC, Deacetylases, including yeast histone deacetylase and 
acetoin utilization protein
CD-Length = 340 residues,  95.6% aligned
Score =  296 bits (758), Expect = 8e-81
Identities = 148/329 (44%), Positives = 214/329 (65%), Gaps = 7/329 (2%)

pfam00850, Hist_deacetyl, Histone deacetylase family
CD-Length = 316 residues,  94.6% aligned
Score =  242 bits (618), Expect = 1e-64
Identities = 118/305 (38%), Positives = 172/305 (56%), Gaps = 16/305 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3245




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20392




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31781




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1621_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1621
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2864
                           PA3774_tr
                           translation of PA3774
                           380
                           99.47
                           99.47
                           0
                           1974.0
     

     
     
89388
                           gb|AAG07161.1|AE004796_6
                           (AE004796) probable acetylpolyamine aminohydrolase [Pseudomonas aeruginosa PAO1]
                           380
                           99.47
                           99.47
                           0
                           1974.0
     

     
     
89389
                           emb|CAE14646.1|
                           (BX571866) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           380
                           64.73
                           80.26
                           10
                           1364.0
     

     
     
89390
                           emb|CAE45336.1|
                           (AJ580773) histone deacetylase-like amidohydrolase [Alcaligenaceae bacterium FB188]
                           406
                           43.10
                           53.69
                           63
                           753.0
     

     
     
89393
                           gb|AAN29373.1|AE014353_8
                           (AE014353) histone deacetylase family protein [Brucella suis 1330]
                           405
                           33.33
                           44.19
                           93
                           526.0
     

     






      

          
GC ORFID: 44623How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3774Glimmer Score: 

          
Start: 3659716Stop: 3660858

          
Length: 1143


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3774 translation of PA3774Homolog Bit Score 764.0

          
Other Homologs:  t_PA3774 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGACGTACCGCTTTCTTCTTCGACGAACTCTGCCTCTGGCACGCCGCCGGCCCGCACGCGCTGACC 
CTGCCGGTCGGCGGCTGGGTGCAACCGCCTGCCGCCGCCGGACACGCCGAATCACCGGAAACCAAGCGCCGG 
CTGAAAAGCCTGCTCGACGTGTCCGGCCTGACCGCCCGCCTGCAACTGCGCAGCGCACCGCCGGCGAGCGAC 
GAGGACCTGCTGCGCGTGCATCCGGCGCACTATCTGGAACGCTTCAAGGCGTTGAGCGACGCCGGCGGCGGC 
AGCCTCGGCCAGGACGCGCCGATCGGCCCGGGCAGCTACGAGATCGCCCGGCTCTCCGCCGGCCTGGCCATC 
GCCGCGCTGGACGTGGTGCTCGCCGGCGAGGCGGACAACGCCTACTCGCTGTCGCGGCCGCCAGGTCACCAC 
TGCCTGCCGGACCAGGCGATGGGCTTCTGTTTCTTCGCCAACATCGCCGTGGCCATCGAGGCGGCCAAGGCG 
CGCCACGGCGTCGAGCGGGTCGCGGTGCTGGACTGGGACGTGCACCACGGTAACGGCACCCAGGCGATCTAC 
TACCGGCGCGACGACGTGTTGAGCATTTCCCTGCATCAGGACGGCTGCTTCCCGCCTGGCTACAGCGGCGCC 
GAAGACATCGGCGAGGATCGCGGTCGTGGCTTCAACCTCAACGTGCCGCTGCTTCCCGGCGGCGGTCACGAC 
GCCTACATGCAGGCCATGCAACGCATCGTGTTGCCAGCGCTGGAGCGCTTCCGCCCGCAATTGATCGTGGTC 
GCCAGTGGCTTCGACGCCAACGCGGTGGACCCGCTGGCACGCATGCAACTGCACAGCGACAGCTTCCGGGCG 
ATGACCGCGATGGTCCGCGACGCGGCCGAGCGGCATGCCGACGGACGCCTGGTGGTGGTCCACGAAGGCGGC 
TACTCGGAAGCCTACGTGCCGTTCTGCGGGCTGGCGGTGATCGAAGAACTCAGCGGCGTGCGCAGCGCGGTG 
CGCGACCCGCTGCGCGACTTCATCGAGTTGCAGCAGCCCAACGCGGCGTTCCGCGACTTCCAGCGCCAGCGC 
CTCGAAGAGCTGGCCGCACAGTTCGGCCTGTGCCCGGCGCAGCCGCTTCAGGCGGCCAGGTAG