ViewGene
Locus Name:
GeneID:
Location:

GeneID:162
TrivialName: PA14_33990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33990
PAO1 Ortholog Locus:PA2371
Sequence Length:2550
Protein Length:849
Start: 3023889
Stop: 3021340
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05759.1|AE004663_5 (AE004663) probable ClpA/B-type protease [Pseudomonas aeruginosa PAO1]
Identities = 846/849 (99%), Positives = 846/849 (99%)
Sequence:
ATGGAACTCGCCGCCCTGATCGGCCGCCTCAACCCGGACTGTCGCCGCGCCTTGGAGCGCGCCGCGCAACGC
TGCCTGCAACGCACCCATCATTACGTAGAGATCGAGCACCTGCTGCTGGAGCTGCTGGACATCGACGGCGGC
GACTTCGCCTGCCTGCTGCCGCGCTTCGGCCTGGAGCGCGACGCCCTGGTCGCCGAGATCAACCTGTCGCTG
GAGCTGTTCAAGGCCGGCAATACCCGCACTCCGGCGCTGTCCGCGCACACCATCGGCCTGCTCGAGGACGCC
GTGGTCCACGCCAGCGTGCTCGGCCAGGCGCAGATCCGTTCCGGCCTGCTGCTGCTCGCCCTGCTCGACCGC
GAGGAGCGCCGCGCCCTGCTGCTGAACAGCGCGTCGTCGCTACTGCGGATTCCCCACGAGGCCTTGCAGGCC
AACCTGCTGGAGTGGATCCAGACCTCCCGCGAACAGCCGCCCGCGCCGAACCGCCCGGCGGCAGGCGGCGAC
AAGCCGGAAAGCGCCCCGGACCCGCTGCTCGACCAGTACACCCAGGACCTCACCGCCGAAGCCCGCGCCGGG
CGCATCGACCCCATAGTCGGGCGCGACGGGGAGATCCGCCAGTGCGTCGACATCCTCCTGCGCCGGCGGCAG
AACAACCCGATCCTGGTCGGCGCGCCGGGCGTCGGCAAGACCGCGGTGGTCGAGGGCCTGGCCCTGCGCATC
GCCGCCGGCGAAGTGCCGCCGTCGTTGCAGGAGGTGATCCTGCGGGTGCTCGACCTCGGCCTGTTGCAGGCC
GGCGCCAGCATGAAGGGCGAGTTCGAGCAGCGCCTCAAGGGCGTGATCGACGCCGTGCGCAACAGCGCGCAG
CCGATCATCCTGTTCATCGACGAGGCGCACACGCTGATCGGCGCCGGCGGCGCAGAAGGCGGCAGCGACGCC
GCCAACCTGCTCAAGCCGGCCCTGGCGCGCGGCGAGTTGCGCACCCTGGCGGCCACCACCTGGCTGGAATAC
AAGAAATACTTCGAGAAGGACCCGGCGCTGACCCGGCGCTTCCAACTGGTCCAGGTCGAGGAGCCGGACGAG
GCCACCGCCGTGGAGATGCTGCGCGGCGTCGCCGGCAAGCTGGAACAGCATCACGGCGTGCAGATCATGGAC
GCGGCCATCGTCGATGCGGTGAAGCTGTCGCACCGCTACATCTCCGGCCGCCAGTTGCCGGACAAGGCGATC
AGCGTGCTCGACACCGCCTGCGCGCGGGTCGCCCTCGGCCAGCACGACGTGCCGCCGCCGCTGGAAAGCCTG
CGCCACCGCGAGCAGGCGCTGGAAGAGGAATTGCAGCGGCTGCGCCGGGAACAGGCCACCGGCCTCGACCAC
AGCGCGCGTATCACCGCCCTGGAAAGCGAGTCGGGCGATAACCGCCGGACCATCCGCGAGCTGGAGACCCGC
TGGGACGAGGAACGCGAAGCGGTGCGCGAACTGCTCGACACCCGCCGCGAATTGCTGGCCCTCAGCGAAAGC
GCCGACGCGGCCAAGCCCGACGAGGAACTGGACGGTCGCATCGACCACCTGGCCGCCGAACTGGCGCGCCTG
GCGGCCGGCCTCGAAGCCATCCGCCAGGACGACCCGCTGGTTCCCGAGCAGGTGGACTCGCGTACCGTGGCC
GCGGTGATCGCCGGCTGGACCGGCATCCCGGTGGGCAAGATGCTCGCCGACGAAGCCCACGCCATCCGTTCC
CTGGCGCAACGAATGGGCCAGCGGGTGATGGGCCAGGAGGCCGCCCTGGGCGCCATCGCCCAGCGCATCCAG
GCCTATCGCGCCGGACTCAGCGACCCGGCCAAGCCGGTCGGCGTATTCCTCCTGCCCGGCCCCACCGGCGTG
GGCAAGACCGAGACCGCCTACGCCCTGGCCGACGCCCTCTACGGCGGCGAACGCAACCTGATCAGCATCAAC
CTCTCCGAGTACCAGGAGGCCCACACCGTCAGCCAGCTCAAGGGCGCCCCGCCCGGCTACGTCGGCTACGGC
AGTGGCGGCGTGCTCACCGAAGCGGTGCGCCGCAAGCCCTATTCGGTGGTGCTGCTGGACGAGATCGAGAAA
GCCCATCCGGACGTGCTGGAAGCCTTCTACAACGTGTTCGACAAGGGTGTGATGGAAGACGGCACCGGCCTG
GTGGTGGACTTCAGGAACACCGTGATCCTCGCCACCAGCAACGTCGGCGCCGAACTGCTGCTGGACAGCCCG
GCCGAACAGGTCGCCACCCCGGCCTTCGACGAGCGCCTGCGCAAAGTCTTGCTGCAAACCTTCCGCCCGGCG
TTCCTCGCGCGCATGACCGTGGTGCCTTACCGGCCGCTGGAGGAAGCCACCCTGGAAGGCATCGTCGTGGCC
AAGCTGGAAAAACTGCGGGAACGCTACAAGGCCGCTACCGGCAAACAGTTCGACTTCGACCCGGCCATCGTC
AAGGCCGTGCTCGCCAAGTGCAGCGCGGCGGGCGCGCGGGATATCGAGAACGTGCTGATGGCGCAGGTGACG
GGGAAGTTGGCGGAGTGGGTACTCGAATGA
Translation:
MELAALIGRLNPDCRRALERAAQRCLQRTHHYVEIEHLLLELLDIDGGDFACLLPRFGLERDALVAEINLSL
ELFKAGNTRTPALSAHTIGLLEDAVVHASVLGQAQIRSGLLLLALLDREERRALLLNSASSLLRIPHEALQA
NLLEWIQTSREQPPAPNRPAAGGDKPESAPDPLLDQYTQDLTAEARAGRIDPIVGRDGEIRQCVDILLRRRQ
NNPILVGAPGVGKTAVVEGLALRIAAGEVPPSLQEVILRVLDLGLLQAGASMKGEFEQRLKGVIDAVRNSAQ
PIILFIDEAHTLIGAGGAEGGSDAANLLKPALARGELRTLAATTWLEYKKYFEKDPALTRRFQLVQVEEPDE
ATAVEMLRGVAGKLEQHHGVQIMDAAIVDAVKLSHRYISGRQLPDKAISVLDTACARVALGQHDVPPPLESL
RHREQALEEELQRLRREQATGLDHSARITALESESGDNRRTIRELETRWDEEREAVRELLDTRRELLALSES
ADAAKPDEELDGRIDHLAAELARLAAGLEAIRQDDPLVPEQVDSRTVAAVIAGWTGIPVGKMLADEAHAIRS
LAQRMGQRVMGQEAALGAIAQRIQAYRAGLSDPAKPVGVFLLPGPTGVGKTETAYALADALYGGERNLISIN
LSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGVMEDGTGL
VVDFRNTVILATSNVGAELLLDSPAEQVATPAFDERLRKVLLQTFRPAFLARMTVVPYRPLEEATLEGIVVA
KLEKLRERYKAATGKQFDFDPAIVKAVLAKCSAAGARDIENVLMAQVTGKLAEWVLE*
AnnotationID:172GeneID:162
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 16:04:48
Gene Name:
Confidence Code:3
GeneProduct:probable ClpA/B-type protease
Cell Localization:()
Synonyms:PA2371
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
99% identical to PA2371 of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:327




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17469




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:162
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
293
                           PA2371_tr
                           translation of PA2371
                           849
                           99.64
                           99.64
                           0
                           4230.0
     

     
     
18774
                           gb|AAG05759.1|AE004663_5
                           (AE004663) probable ClpA/B-type protease [Pseudomonas aeruginosa PAO1]
                           849
                           99.64
                           99.64
                           0
                           4230.0
     

     
     
18775
                           gb|AAN68703.1|AE016501_4
                           (AE016785) chaperone-associated ATPase, putative [Pseudomonas putida KT2440]
                           899
                           51.39
                           66.07
                           71
                           2199.0
     

     
     
18776
                           emb|CAD17900.1|
                           (AL646080) PUTATIVE CLPA/B-TYPE CHAPERONE PROTEIN [Ralstonia solanacearum]
                           921
                           50.05
                           63.51
                           88
                           2098.0
     

     
     
18779
                           gb|AAQ61627.2|
                           (AE016924) probable ClpA/B-type chaperone [Chromobacterium violaceum ATCC 12472]
                           910
                           48.68
                           62.85
                           96
                           2023.0
     

     






      

          
GC ORFID: 43164How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2371Glimmer Score: 

          
Start: 1930027Stop: 1932576

          
Length: 2550


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2371 translation of PA2371Homolog Bit Score 1634.0

          
Other Homologs:  t_PA2371 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACTCGCCGCCCTGATCGGCCGCCTCAACCCGGACTGTCGCCGCGCCTTGGAGCGCGCCGCGCAACGC 
TGCCTGCAACGCACCCATCATTACGTAGAGATCGAGCACCTGCTGCTGGAGCTGCTGGACATCGACGGCGGC 
GACTTCGCCTGCCTGCTGCCGCGCTTCGGCCTGGAGCGCGACGCCCTGGTCGCCGAGATCAACCTGTCGCTG 
GAGCTGTTCAAGGCCGGCAATACCCGCACTCCGGCGCTGTCCGCGCACACCATCGGCCTGCTCGAGGACGCC 
GTGGTCCACGCCAGCGTGCTCGGCCAGGCGCAGATCCGTTCCGGCCTGCTGCTGCTCGCCCTGCTCGACCGC 
GAGGAGCGCCGCGCCCTGCTGCTGAACAGCGCGTCGTCGCTACTGCGGATTCCCCACGAGGCCTTGCAGGCC 
AACCTGCTGGAGTGGATCCAGACCTCCCGCGAACAGCCGCCCGCGCCGAACCGCCCGGCGGCAGGCGGCGAC 
AAGCCGGAAAGCGCCCCGGACCCGCTGCTCGACCAGTACACCCAGGACCTCACCGCCGAAGCCCGCGCCGGG 
CGCATCGACCCCATAGTCGGGCGCGACGGGGAGATCCGCCAGTGCGTCGACATCCTCCTGCGCCGGCGGCAG 
AACAACCCGATCCTGGTCGGCGCGCCGGGCGTCGGCAAGACCGCGGTGGTCGAGGGCCTGGCCCTGCGCATC 
GCCGCCGGCGAAGTGCCGCCGTCGTTGCAGGAGGTGATCCTGCGGGTGCTCGACCTCGGCCTGTTGCAGGCC 
GGCGCCAGCATGAAGGGCGAGTTCGAGCAGCGCCTCAAGGGCGTGATCGACGCCGTGCGCAACAGCGCGCAG 
CCGATCATCCTGTTCATCGACGAGGCGCACACGCTGATCGGCGCCGGCGGCGCAGAAGGCGGCAGCGACGCC 
GCCAACCTGCTCAAGCCGGCCCTGGCGCGCGGCGAGTTGCGCACCCTGGCGGCCACCACCTGGCTGGAATAC 
AAGAAATACTTCGAGAAGGACCCGGCGCTGACCCGGCGCTTCCAACTGGTCCAGGTCGAGGAGCCGGACGAG 
GCCACCGCCGTGGAGATGCTGCGCGGCGTCGCCGGCAAGCTGGAACAGCATCACGGCGTGCAGATCATGGAC 
GCGGCCATCGTCGATGCGGTGAAGCTGTCGCACCGCTACATCTCCGGCCGCCAGTTGCCGGACAAGGCGATC 
AGCGTGCTCGACACCGCCTGCGCGCGGGTCGCCCTCGGCCAGCACGACGTGCCGCCGCCGCTGGAAAGCCTG 
CGCCACCGCGAGCAGGCGCTGGAAGAGGAATTGCAGCGGCTGCGCCGGGAACAGGCCACCGGCCTCGACCAC 
AGCGCGCGTATCACCGCCCTGGAAAGCGAGTCGGGCGATAACCGCCGGACCATCCGCGAGCTGGAGACCCGC 
TGGGACGAGGAACGCGAAGCGGTGCGCGAACTGCTCGACACCCGCCGCGAATTGCTGGCCCTCAGCGAAAGC 
GCCGACGCGGCCAAGCCCGACGAGGAACTGGACGGTCGCATCGACCACCTGGCCGCCGAACTGGCGCGCCTG 
GCGGCCGGCCTCGAAGCCATCCGCCAGGACGACCCGCTGGTTCCCGAGCAGGTGGACTCGCGTACCGTGGCC 
GCGGTGATCGCCGGCTGGACCGGCATCCCGGTGGGCAAGATGCTCGCCGACGAAGCCCACGCCATCCGTTCC 
CTGGCGCAACGAATGGGCCAGCGGGTGATGGGCCAGGAGGCCGCCCTGGGCGCCATCGCCCAGCGCATCCAG 
GCCTATCGCGCCGGACTCAGCGACCCGGCCAAGCCGGTCGGCGTATTCCTCCTGCCCGGCCCCACCGGCGTG 
GGCAAGACCGAGACCGCCTACGCCCTGGCCGACGCCCTCTACGGCGGCGAACGCAACCTGATCAGCATCAAC 
CTCTCCGAGTACCAGGAGGCCCACACCGTCAGCCAGCTCAAGGGCGCCCCGCCCGGCTACGTCGGCTACGGC 
AGTGGCGGCGTGCTCACCGAAGCGGTGCGCCGCAAGCCCTATTCGGTGGTGCTGCTGGACGAGATCGAGAAA 
GCCCATCCGGACGTGCTGGAAGCCTTCTACAACGTGTTCGACAAGGGTGTGATGGAAGACGGCACCGGCCTG 
GTGGTGGACTTCAGGAACACCGTGATCCTCGCCACCAGCAACGTCGGCGCCGAACTGCTGCTGGACAGCCCG 
GCCGAACAGGTCGCCACCCCGGCCTTCGACGAGCGCCTGCGCAAAGTCTTGCTGCAAACCTTCCGCCCGGCG 
TTCCTCGCGCGCATGACCGTGGTGCCTTACCGGCCGCTGGAGGAAGCCACCCTGGAAGGCATCGTCGTGGCC 
AAGCTGGAAAAACTGCGGGAACGCTACAAGGCCGCTACCGGCAAACAGTTCGACTTCGACCCGGCCATCGTC 
AAGGCCGTGCTCGCCAAGTGCAGCGCGGCGGGCGCGCGGGATATCGAGAACGTGCTGATGGCGCAGGTGACG 
GGGAAGTTGGCGGAGTGGGTACTCGAATGA