ViewGene
Locus Name:
GeneID:
Location:

GeneID:1619
TrivialName: PA14_22060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22060
PAO1 Ortholog Locus:PA3241
Sequence Length:1170
Protein Length:389
Start: 1917630
Stop: 1918799
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06629.1|AE004747_2 (AE004747) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 388/389 (99%), Positives = 388/389 (99%)
Sequence:
GTGTCCGATCCCCTTGCCCCACGTCCGCCGCTCACCGGCCTGATCCTTTCCGGGGGCGGCGCCCGCGCGGCC
TACCAGGTCGGCGTCCTGGCCGCCATCGCCGACCTGCTGCCGGACAGCGCCGGCAATCCTTTCCCGGTCATC
GTCGGTACCTCCGCCGGCGCCATCAACGCCGTTGGCCTGGCTTGCGGCGCCCTGCAATTCCGCCAGGCGATC
CAGCGCCTGACCGCGGTCTGGCAGGGATTCCGCACCGAACATGTCTATCGCAGCGACTGGCCGGGCGTGACC
CGCCAGGCCTCGCGCTTCCTCGGCCATAGCCTGCTCGGCCTGGGGCGGCGGGTGCCGGTGGCGTTGCTGGAC
AACCGGCCGTTGCATGAGCTGCTGGCACGTGAGCTGGATTTTTCCGGGATTCATGCGGCGGTGCGCCAGCGC
CAGTTGCGCGCGGTGGCGGTGACCGCGTTCGGCTACGAGTCGGGGCAGGCGGTGACCTTCTACCAGGGGCGC
GCGACCATCGATCCCTGGGTACGCCATCGGCGCCTGGGCATTCCCACCCGCCTGGAGCTTCGGCACCTGCTG
GCCAGCGCGGCGATTCCGCTGCTGTTCCCGCCGGTGCGGATCAACCGCGAATACTTCGGCGACGGCGCGGTG
CGTTCCCAGGCGCCCATCAGTCCGGCGTTGCACCTGGGCGCCACGCGGGTGCTGGTGATCGGCGTCAGCGGC
AACCCGGCCACCGGTGGCGACAGTGCCATGACCGGCCTGCCGCCGTCCGACCGACCGCCGAGCCTGGCGCAG
ATCGGCGCCCACCTGTTGAACAGCACCTTCATCGACAGTCTGGAAGGCGACATCGAGCAGTTGCAGCGGATG
AACCAGATCGGCCAGTTGGTGGCGCCGGAGGTGCGCCGCCAGGCGGGTGGGCTGGAGCCGGTGGAGGTATTG
CTGGTGTCGCCGAGCCGGCCGCTGGACGAGATCGCCGCGCGGCACTACCGGGAGCTGTCGCGGGTGCTGCGG
CTTTTCCTGCGCGGTCCCGGAGCGACCCGCGCCAGCGGGGCGGGGGTATTGAGCTACCTGTTGTTCGAGCGC
GGCTATTGCAGCGAACTGATCGAACTGGGCTACCACGATGCGATGGGCAAGCGGGCGGAACTGGAGCGCTTC
CTGCGGATCGAGCGGTAA
Translation:
MSDPLAPRPPLTGLILSGGGARAAYQVGVLAAIADLLPDSAGNPFPVIVGTSAGAINAVGLACGALQFRQAI
QRLTAVWQGFRTEHVYRSDWPGVTRQASRFLGHSLLGLGRRVPVALLDNRPLHELLARELDFSGIHAAVRQR
QLRAVAVTAFGYESGQAVTFYQGRATIDPWVRHRRLGIPTRLELRHLLASAAIPLLFPPVRINREYFGDGAV
RSQAPISPALHLGATRVLVIGVSGNPATGGDSAMTGLPPSDRPPSLAQIGAHLLNSTFIDSLEGDIEQLQRM
NQIGQLVAPEVRRQAGGLEPVEVLLVSPSRPLDEIAARHYRELSRVLRLFLRGPGATRASGAGVLSYLLFER
GYCSELIELGYHDAMGKRAELERFLRIER*
AnnotationID:1628GeneID:1619
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:17
Gene Name:
Confidence Code:3
GeneProduct:putative patatin family protein
Cell Localization:()
Synonyms:PA3241
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1752,pfam01734
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57337.1| (AE016870) patatin family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 393

 Score =  498 bits (1283), Expect = e-140
 Identities = 259/379 (68%), Positives = 296/379 (78%), Gaps = 1/379 (0%)

>emb|CAD86206.1| (BX321864) Patatin [Nitrosomonas europaea ATCC 19718]
          Length = 384

 Score =  352 bits (903), Expect = 2e-96
 Identities = 182/383 (47%), Positives = 250/383 (65%), Gaps = 7/383 (1%)






 
Structural Features:
COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily
CD-Length = 306 residues, 100.0% aligned
Score =  132 bits (332), Expect = 9e-32
Identities = 96/379 (25%), Positives = 129/379 (34%), Gaps = 75/379 (19%)

pfam01734, Patatin, Patatin-like phospholipase. 
CD-Length = 179 residues,  99.4% aligned
Score = 72.7 bits (178), Expect = 6e-14
Identities = 56/212 (26%), Positives = 74/212 (34%), Gaps = 34/212 (16%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14397




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20388




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32301




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1619_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1619
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2862
                           PA3241_tr
                           translation of PA3241
                           389
                           99.74
                           99.74
                           0
                           1974.0
     

     
     
89294
                           gb|AAG06629.1|AE004747_2
                           (AE004747) hypothetical protein PA3241 [Pseudomonas aeruginosa PAO1]
                           389
                           99.48
                           99.74
                           0
                           1971.0
     

     
     
89295
                           gb|AAN67356.1|AE016361_10
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           393
                           67.68
                           76.84
                           15
                           1307.0
     

     
     
89296
                           gb|AAO57337.1|
                           (AE016870) patatin family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           408
                           64.95
                           74.50
                           34
                           1290.0
     

     
     
89297
                           emb|CAD86206.1|
                           (BX321864) Patatin [Nitrosomonas europaea ATCC 19718]
                           397
                           47.10
                           64.73
                           21
                           905.0
     

     






      

          
GC ORFID: 44621How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3241Glimmer Score: 

          
Start: 3036301Stop: 3035132

          
Length: 1170


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3241 translation of PA3241Homolog Bit Score 764.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2644 (ORF: BLASTX 516.0), t_PA3241 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCGATCCCCTTGCCCCACGTCCGCCGCTCACCGGCCTGATCCTTTCCGGGGGCGGCGCCCGCGCGGCC 
TACCAGGTCGGCGTCCTGGCCGCCATCGCCGACCTGCTGCCGGACAGCGCCGGCAATCCTTTCCCGGTCATC 
GTCGGTACCTCCGCCGGCGCCATCAACGCCGTTGGCCTGGCTTGCGGCGCCCTGCAATTCCGCCAGGCGATC 
CAGCGCCTGACCGCGGTCTGGCAGGGATTCCGCACCGAACATGTCTATCGCAGCGACTGGCCGGGCGTGACC 
CGCCAGGCCTCGCGCTTCCTCGGCCATAGCCTGCTCGGCCTGGGGCGGCGGGTGCCGGTGGCGTTGCTGGAC 
AACCGGCCGTTGCATGAGCTGCTGGCACGTGAGCTGGATTTTTCCGGGATTCATGCGGCGGTGCGCCAGCGC 
CAGTTGCGCGCGGTGGCGGTGACCGCGTTCGGCTACGAGTCGGGGCAGGCGGTGACCTTCTACCAGGGGCGC 
GCGACCATCGATCCCTGGGTACGCCATCGGCGCCTGGGCATTCCCACCCGCCTGGAGCTTCGGCACCTGCTG 
GCCAGCGCGGCGATTCCGCTGCTGTTCCCGCCGGTGCGGATCAACCGCGAATACTTCGGCGACGGCGCGGTG 
CGTTCCCAGGCGCCCATCAGTCCGGCGTTGCACCTGGGCGCCACGCGGGTGCTGGTGATCGGCGTCAGCGGC 
AACCCGGCCACCGGTGGCGACAGTGCCATGACCGGCCTGCCGCCGTCCGACCGACCGCCGAGCCTGGCGCAG 
ATCGGCGCCCACCTGTTGAACAGCACCTTCATCGACAGTCTGGAAGGCGACATCGAGCAGTTGCAGCGGATG 
AACCAGATCGGCCAGTTGGTGGCGCCGGAGGTGCGCCGCCAGGCGGGTGGGCTGGAGCCGGTGGAGGTATTG 
CTGGTGTCGCCGAGCCGGCCGCTGGACGAGATCGCCGCGCGGCACTACCGGGAGCTGTCGCGGGTGCTGCGG 
CTTTTCCTGCGCGGTCCCGGAGCGACCCGCGCCAGCGGGGCGGGGGTATTGAGCTACCTGTTGTTCGAGCGC 
GGCTATTGCAGCGAACTGATCGAACTGGGCTACCACGATGCGATGGGCAAGCGGGCGGAACTGGAGCGCTTC 
CTGCGGATCGAGCGGTAA