ViewGene
Locus Name:
GeneID:
Location:

GeneID:1618
TrivialName: PA14_43950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43950
PAO1 Ortholog Locus:PA1588
Sequence Length:1167
Protein Length:388
Start: 3913328
Stop: 3912162
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04977.1|AE004587_1 (AE004587) succinyl-CoA synthetase beta chain [Pseudomonas aeruginosa PAO1]
Identities = 387/388 (99%), Positives = 387/388 (99%)
Sequence:
ATGAATCTCCACGAATATCAGGGTAAGCAGCTGTTCGCTGAATACGGCCTGCCTGTATCCAAGGGCTTTGCC
GTAGACACCCCCGAAGAGGCCGCAGAAGCCTGCGACAAGATCGGCGGCAGCGAGTGGGTCGTCAAAGCTCAG
GTGCACGCCGGCGGCCGCGGTAAAGCGGGCGGTGTGAAGCTGGTGAAGAGCAAAGAGGACGCCAAGGCGTTC
GCCCAGCAGTGGCTGGGCAAGAACCTGGTGACCTACCAGACCGACGCCAACGGCCAGCCGGTCAGCAAGATC
CTGGTGGAGTCCTGCACCGACATCGACAAGGAGCTGTACCTCGGCGCCGTCGTCGATCGTTCCAGCCGCCGC
ATCGTGTTCATGGCTTCCACCGAAGGTGGCGTGGACATCGAGAAGGTCGCCCACGACACTCCCGAGAAGATC
CTCAAGGTCACCATCGACCCGCTGGTCGGCGCGCAGCCGTACCAGGGCCGCGAGCTGGCCTTCCAACTGGGC
CTGAAGGGCGACCAGATCAAGCAGTTCACCCATATCTTCGTCGGCCTGGCGAAGCTGTTCCAGGACTACGAC
CTGGCCCTGCTGGAAGTGAACCCGCTGGTGATCAAGAAAGACGGCAACCTGCACTGCCTGGATGCCAAGATC
AACATCGACAGCAACGCCCTGTACCGTCAGCCGAAGCTGCGCGCCATGCACGACCCGTCCCAGGACGACGCC
CGTGAAGCCCATGCGCAGAAGTGGGAGCTGAACTACGTCGCGCTGGAAGGCAACATCGGCTGCATGGTCAAC
GGCGCCGGCCTGGCCATGGGTACCATGGACATCGTCAACCTGCACGGCGGCAAGCCGGCCAACTTCCTCGAC
GTTGGCGGCGGTGCGACCAAGGAGCGCGTGACCGAAGCGTTCAAGATCATCCTGTCCGACAGCAACGTGAAG
GCTGTCCTGGTGAACATCTTCGGCGGCATCGTGCGTTGCGACATGATCGCCGAAGGCATCATCGGCGCCGTC
AAAGAAGTCGGCGTGAAGGTTCCGGTTGTCGTCCGCCTGGAAGGCAACAACGCTGAACTGGGTGCCAAGGTC
CTGGCCGAAAGCGGCCTGAACATCATCGCGGCAACCAGCCTGACCGACGCTGCCCAGCAAGTCGTCAAGGCC
GCGGAGGGTAAGTAA
Translation:
MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACDKIGGSEWVVKAQVHAGGRGKAGGVKLVKSKEDAKAF
AQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHDTPEKI
LKVTIDPLVGAQPYQGRELAFQLGLKGDQIKQFTHIFVGLAKLFQDYDLALLEVNPLVIKKDGNLHCLDAKI
NIDSNALYRQPKLRAMHDPSQDDAREAHAQKWELNYVALEGNIGCMVNGAGLAMGTMDIVNLHGGKPANFLD
VGGGATKERVTEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGNNAELGAKV
LAESGLNIIAATSLTDAAQQVVKAAEGK*
AnnotationID:1627GeneID:1618
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 06:06:36
Gene Name:sucC
Confidence Code:1
GeneProduct:succinyl-CoA synthetase beta subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0045
Secondary Functional Category(ies):
EC Number:6.2.1.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69767.1|AE016613_2 (AE016789) succinyl-CoA synthetase, beta subunit [Pseudomonas
           putida KT2440]
          Length = 388

 Score =  718 bits (1853), Expect = 0.0
 Identities = 362/388 (93%), Positives = 377/388 (97%)

>gb|AAO55718.1| (AE016863) succinyl-CoA synthase, beta subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 388

 Score =  708 bits (1827), Expect = 0.0
 Identities = 355/388 (91%), Positives = 372/388 (95%)

>gb|AAN79278.1|AE016757_182 (AE016757) Succinyl-CoA synthetase beta chain [Escherichia coli
           CFT073]
          Length = 388

 Score =  593 bits (1530), Expect = e-169
 Identities = 299/388 (77%), Positives = 329/388 (84%)








 
Structural Features:
COG0045, SucC, Succinyl-CoA synthetase, beta subunit 
[Energy production and conversion]
CD-Length = 387 residues, 100.0% aligned
Score =  563 bits (1453), Expect = 1e-161
Identities = 251/390 (64%), Positives = 302/390 (77%), Gaps = 5/390 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3239




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20386




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37279




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1618_cdd.html


    		




 
URL:

















    ReferenceID:37907




  
Author/Investigator(s):
        Kapatral V, Bina X, Chakrabarty AM.





  
Title:
        Succinyl coenzyme A synthetase of Pseudomonas aeruginosa with a broad specificity for nucleoside triphosphate (NTP) synthesis modulates specificity for NTP synthesis by the 12-kilodalton form of nucleoside diphosphate kinase.




  
PubMed:
        10671455


MedLine:
        




    
Source:
J Bacteriol. 2000 Mar;182(5):1333-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10671455&dopt=Citation

















    ReferenceID:37909




  
Author/Investigator(s):
        Buck D, Spencer ME, Guest JR.





  
Title:
        Primary structure of the succinyl-CoA synthetase of Escherichia coli.




  
PubMed:
        3002435


MedLine:
        




    
Source:
Biochemistry. 1985 Oct 22;24(22):6245-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=86104124&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:1618
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2861
                           PA1588_tr
                           translation of PA1588
                           388
                           99.74
                           99.74
                           0
                           1973.0
     

     
     
89112
                           gb|AAG04977.1|AE004587_1
                           (AE004587) succinyl-CoA synthetase beta chain [Pseudomonas aeruginosa PAO1]
                           388
                           99.74
                           99.74
                           0
                           1973.0
     

     
     
89113
                           gb|AAD21622.1|
                           (AF128399) succinyl-CoA synthetase beta subunit [Pseudomonas aeruginosa]
                           388
                           94.84
                           95.10
                           0
                           1865.0
     

     
     
89114
                           gb|AAN69767.1|AE016613_2
                           (AE016789) succinyl-CoA synthetase, beta subunit [Pseudomonas putida KT2440]
                           388
                           93.29
                           97.16
                           0
                           1853.0
     

     
     
89115
                           gb|AAO55718.1|
                           (AE016863) succinyl-CoA synthase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           388
                           91.49
                           95.87
                           0
                           1827.0
     

     






      

          
GC ORFID: 44620How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1588Glimmer Score: 

          
Start: 1040581Stop: 1041747

          
Length: 1167


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1588 translation of PA1588Homolog Bit Score 764.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1000 (ORF: BLASTX 708.0), t_PA1588 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCTCCACGAATATCAGGGTAAGCAGCTGTTCGCTGAATACGGCCTGCCTGTATCCAAGGGCTTTGCC 
GTAGACACCCCCGAAGAGGCCGCAGAAGCCTGCGACAAGATCGGCGGCAGCGAGTGGGTCGTCAAAGCTCAG 
GTGCACGCCGGCGGCCGCGGTAAAGCGGGCGGTGTGAAGCTGGTGAAGAGCAAAGAGGACGCCAAGGCGTTC 
GCCCAGCAGTGGCTGGGCAAGAACCTGGTGACCTACCAGACCGACGCCAACGGCCAGCCGGTCAGCAAGATC 
CTGGTGGAGTCCTGCACCGACATCGACAAGGAGCTGTACCTCGGCGCCGTCGTCGATCGTTCCAGCCGCCGC 
ATCGTGTTCATGGCTTCCACCGAAGGTGGCGTGGACATCGAGAAGGTCGCCCACGACACTCCCGAGAAGATC 
CTCAAGGTCACCATCGACCCGCTGGTCGGCGCGCAGCCGTACCAGGGCCGCGAGCTGGCCTTCCAACTGGGC 
CTGAAGGGCGACCAGATCAAGCAGTTCACCCATATCTTCGTCGGCCTGGCGAAGCTGTTCCAGGACTACGAC 
CTGGCCCTGCTGGAAGTGAACCCGCTGGTGATCAAGAAAGACGGCAACCTGCACTGCCTGGATGCCAAGATC 
AACATCGACAGCAACGCCCTGTACCGTCAGCCGAAGCTGCGCGCCATGCACGACCCGTCCCAGGACGACGCC 
CGTGAAGCCCATGCGCAGAAGTGGGAGCTGAACTACGTCGCGCTGGAAGGCAACATCGGCTGCATGGTCAAC 
GGCGCCGGCCTGGCCATGGGTACCATGGACATCGTCAACCTGCACGGCGGCAAGCCGGCCAACTTCCTCGAC 
GTTGGCGGCGGTGCGACCAAGGAGCGCGTGACCGAAGCGTTCAAGATCATCCTGTCCGACAGCAACGTGAAG 
GCTGTCCTGGTGAACATCTTCGGCGGCATCGTGCGTTGCGACATGATCGCCGAAGGCATCATCGGCGCCGTC 
AAAGAAGTCGGCGTGAAGGTTCCGGTTGTCGTCCGCCTGGAAGGCAACAACGCTGAACTGGGTGCCAAGGTC 
CTGGCCGAAAGCGGCCTGAACATCATCGCGGCAACCAGCCTGACCGACGCTGCCCAGCAAGTCGTCAAGGCC 
GCGGAGGGTAAGTAA