ViewGene
Locus Name:
GeneID:
Location:

GeneID:1617
TrivialName: PA14_49080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49080
PAO1 Ortholog Locus:PA1187
Sequence Length:1140
Protein Length:379
Start: 4360276
Stop: 4359137
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04576.1|AE004549_3 (AE004549) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 379/379 (100%), Positives = 379/379 (100%)
Sequence:
ATGCAACGGCAGATCTTCGAGACCGAACACAACCTGTTCCGCGATGCCTTCCGCGCCTTTCTCGACAAAGAG
GTGGTGCCGCACCAGGACGCCTGGGAAGAGGCCGGGGTGGTCGACCGCGCTGTCTGGAGGAAGGCGGGGGAG
ATGGGCTTCCTGCTGCCCTGGGCGGACGAGGAGTACGGTGGCGCCGGGCTCAAGGACTTCCGCTACGAGCAG
ATCATGTGCGAGGAGCTGGCGCGGATCAACGAACCGGGCTTCATGATCCCGCTGCACTCGGCGTTGTGCGGG
CCGTACATCGCCGAATACGGTAGCGCCGAGCAGAAGGCCCGCCTGTTGCCGGGGATCGTCCGTGGCGAGACC
ATCCTCGCCGTGGCCATGACCGAGCCGTCCGCCGGCTCCGACCTGGCCGGCATGCGCAGCACCGCGGTGGAC
AAGGGCGACCACTGGCTGCTCAACGGCTCCAAGGTGTTCATCTCCAACGGCCTGCTGGCCGACCTGGTGATC
GTCGCGGCGAAGACCGATCCGGCGAACAAGCACGCCATGGGCCTGTTCCTGGTGGAGCGCGGCATGCAAGGC
TTCGAGCGCGGGCGCAACCTGAAGAAGCTCGGCATGAAGAGCCAGGACACCGCCGAGCTGTTCTTCAACAAT
GTGCGGGTGCCGAAGGAAAACCTGCTGGGCGACGCCAAGGGCGGCTTCTTCTACCTGATGAACATGCTCGCC
CAGGAACGCCTGACCAACGCCTGCGGCGCGGTGGCCGGGGCCGAGGCGGCGTTGCAGGCGACCATCGATTAC
GTGAAGGAGCGCCAGGCCTTCGGCCGGCCGGTGGCGCACTTCCAGAACACCCGCTTCAAGCTCGCCGAAATG
CGTACCCAGATCGACGTGGCGCAGGTTTTCACCGACCGCTGCGTGATGGACCACAACCAGAAGAAGCTGTCC
CCCGAGGTCGCCGCCGAAGCCAAGCTGTTCACCACCGAGCTGCTGGGCAAGGTGGTCGACGAAGGCGTGCAA
CTGCATGGCGGCTGGGGCTACATGTGGGAGTATCCGATTTGCAGGATGTACGCCAACGCCCGCATCCAGCGG
ATCTTCGCCGGTACCTCGGAGATCATGAAAGAGATCATCAGCCGCGGCATGAAGCTCTGA
Translation:
MQRQIFETEHNLFRDAFRAFLDKEVVPHQDAWEEAGVVDRAVWRKAGEMGFLLPWADEEYGGAGLKDFRYEQ
IMCEELARINEPGFMIPLHSALCGPYIAEYGSAEQKARLLPGIVRGETILAVAMTEPSAGSDLAGMRSTAVD
KGDHWLLNGSKVFISNGLLADLVIVAAKTDPANKHAMGLFLVERGMQGFERGRNLKKLGMKSQDTAELFFNN
VRVPKENLLGDAKGGFFYLMNMLAQERLTNACGAVAGAEAALQATIDYVKERQAFGRPVAHFQNTRFKLAEM
RTQIDVAQVFTDRCVMDHNQKKLSPEVAAEAKLFTTELLGKVVDEGVQLHGGWGYMWEYPICRMYANARIQR
IFAGTSEIMKEIISRGMKL*
AnnotationID:1626GeneID:1617
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 16:04:02
Gene Name:
Confidence Code:3
GeneProduct:probable acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:lcaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG0141
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3237




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16979




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1187_CDS.cgi


    		




 
URL:

















    ReferenceID:20384




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1617
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2858
                           PA1187_tr
                           translation of PA1187
                           379
                           99.99
                           99.99
                           0
                           1973.0
     

     
     
89091
                           gb|AAG04576.1|AE004549_3
                           (AE004549) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           379
                           99.99
                           99.99
                           0
                           1973.0
     

     
     
2859
                           PA4435_tr
                           translation of PA4435
                           384
                           55.72
                           70.31
                           8
                           1087.0
     

     
     
89092
                           gb|AAG07823.1|AE004858_1
                           (AE004858) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           384
                           55.72
                           70.31
                           8
                           1087.0
     

     
     
89093
                           emb|CAB39720.1|
                           (AL939129) probable acyl-CoA dehydrogenase [Streptomyces coelicolor A3(2)]
                           382
                           54.45
                           67.01
                           3
                           1061.0
     

     






      

          
GC ORFID: 44619How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1187Glimmer Score: 

          
Start: 593632Stop: 594771

          
Length: 1140


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1187 translation of PA1187Homolog Bit Score 764.0

          
Other Homologs:  t_PA4435 (ORF: BLASTX 421.0), t_PA1535 (ORF: BLASTX 265.0), t_PA1187 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACGGCAGATCTTCGAGACCGAACACAACCTGTTCCGCGATGCCTTCCGCGCCTTTCTCGACAAAGAG 
GTGGTGCCGCACCAGGACGCCTGGGAAGAGGCCGGGGTGGTCGACCGCGCTGTCTGGAGGAAGGCGGGGGAG 
ATGGGCTTCCTGCTGCCCTGGGCGGACGAGGAGTACGGTGGCGCCGGGCTCAAGGACTTCCGCTACGAGCAG 
ATCATGTGCGAGGAGCTGGCGCGGATCAACGAACCGGGCTTCATGATCCCGCTGCACTCGGCGTTGTGCGGG 
CCGTACATCGCCGAATACGGTAGCGCCGAGCAGAAGGCCCGCCTGTTGCCGGGGATCGTCCGTGGCGAGACC 
ATCCTCGCCGTGGCCATGACCGAGCCGTCCGCCGGCTCCGACCTGGCCGGCATGCGCAGCACCGCGGTGGAC 
AAGGGCGACCACTGGCTGCTCAACGGCTCCAAGGTGTTCATCTCCAACGGCCTGCTGGCCGACCTGGTGATC 
GTCGCGGCGAAGACCGATCCGGCGAACAAGCACGCCATGGGCCTGTTCCTGGTGGAGCGCGGCATGCAAGGC 
TTCGAGCGCGGGCGCAACCTGAAGAAGCTCGGCATGAAGAGCCAGGACACCGCCGAGCTGTTCTTCAACAAT 
GTGCGGGTGCCGAAGGAAAACCTGCTGGGCGACGCCAAGGGCGGCTTCTTCTACCTGATGAACATGCTCGCC 
CAGGAACGCCTGACCAACGCCTGCGGCGCGGTGGCCGGGGCCGAGGCGGCGTTGCAGGCGACCATCGATTAC 
GTGAAGGAGCGCCAGGCCTTCGGCCGGCCGGTGGCGCACTTCCAGAACACCCGCTTCAAGCTCGCCGAAATG 
CGTACCCAGATCGACGTGGCGCAGGTTTTCACCGACCGCTGCGTGATGGACCACAACCAGAAGAAGCTGTCC 
CCCGAGGTCGCCGCCGAAGCCAAGCTGTTCACCACCGAGCTGCTGGGCAAGGTGGTCGACGAAGGCGTGCAA 
CTGCATGGCGGCTGGGGCTACATGTGGGAGTATCCGATTTGCAGGATGTACGCCAACGCCCGCATCCAGCGG 
ATCTTCGCCGGTACCTCGGAGATCATGAAAGAGATCATCAGCCGCGGCATGAAGCTCTGA