ViewGene
Locus Name:
GeneID:
Location:

GeneID:1616
TrivialName: PA14_49380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49380
PAO1 Ortholog Locus:PA1162
Sequence Length:1152
Protein Length:383
Start: 4388570
Stop: 4389721
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04551.1|AE004546_6 (AE004546) succinyl-diaminopimelate desuccinylase [Pseudomonas aeruginosa PAO1]
Identities = 380/383 (99%), Positives = 382/383 (99%)
Sequence:
ATGACCGCCTCTTCGCCGAGTCTCTCGCCGACCCTCGAACTCGCCTGCGAGTTGATCCGCCGCCCCTCCGTC
ACGCCCCTCGACGCCGACTGCCAGGCCCTGATGATGCGCCGCCTGGAAGCCGCCGGCTTCGCCCTGGAGCCG
ATGCGCATTGAGGAGGTGGACAACTTCTGGGCACGGCGCGGCGGCGACGGCCCGGTGCTGTGCTTCGCCGGG
CACACCGACGTGGTCCCCACCGGCCCGCTGCAGGCCTGGCAGCACCAACCCTTCGACGCCCTGATCGACGAC
CAGGGCATGCTCTGCGGACGCGGCGCGGCGGACATGAAAGGCAGCCTGGCGTCGATGATCGTCGCCGTCGAG
CGCTTCGTCGCCGACCACCCGAAGCACAAGGGCGCCATCGCCTTCCTCATCACCAGCGACGAGGAAGGCCCG
GCCCACCACGGCACCAAGGCGGTGGTCGAACGCCTCGCCGCACGCGGCGAGCGCCTGGACTGGTGCATCGTC
GGCGAACCGTCGAGCACCAGCCTGGTCGGCGACGTGGTGAAGAACGGCCGCCGCGGCTCCCTTGGCGCCAAG
CTGACCATCCGCGGCGTACAGGGCCATGTGGCCTACCCGCACCTGGCGAAGAACCCGATCCACCTGGCCGCC
CCGGCGCTGGCCGAACTGGCGGCGGAACACTGGGACGACGGCAATGCCTTCTTCCCGCCGACCAGCTTCCAG
GTTTCCAACCTGAACTCCGGCACCGGCGCCACCAACGTCATCCCCGGTGAACTGACCGCGCTGTTCAACTTC
CGCTTCTCCACTGAATCCACCGTCGAAGGCCTGCAGAAACGCGTCGAGGCGATCCTCGACAAGCACGGCCTG
GACTGGCACGTCGAATGGGCGCTGTCCGGCCTGCCGTTCCTCACCGAGCCGGGCGAACTGCTCGATGCGGTG
GCCGCCAGCATCAGGGCGGTCACCGGCCGCGAGGCCCGGCCCTCGACCAGCGGCGGCACCTCCGACGGACGC
TTCATCGCCACCATGGGCACCCAGGTGGTCGAACTCGGCCCGGTCAACGCCACCATCCACCAGGTCAACGAG
CGGGTCCTGGCCAGCGACCTGGAGCTGCTCACCGAAATCTACTACCAGACCCTGGTGAGGCTGCTCGCCTGA
Translation:
MTASSPSLSPTLELACELIRRPSVTPLDADCQALMMRRLEAAGFALEPMRIEEVDNFWARRGGDGPVLCFAG
HTDVVPTGPLQAWQHQPFDALIDDQGMLCGRGAADMKGSLASMIVAVERFVADHPKHKGAIAFLITSDEEGP
AHHGTKAVVERLAARGERLDWCIVGEPSSTSLVGDVVKNGRRGSLGAKLTIRGVQGHVAYPHLAKNPIHLAA
PALAELAAEHWDDGNAFFPPTSFQVSNLNSGTGATNVIPGELTALFNFRFSTESTVEGLQKRVEAILDKHGL
DWHVEWALSGLPFLTEPGELLDAVAASIRAVTGREARPSTSGGTSDGRFIATMGTQVVELGPVNATIHQVNE
RVLASDLELLTEIYYQTLVRLLA*
AnnotationID:1625GeneID:1616
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 17:05:12
Gene Name:dapE
Confidence Code:2
GeneProduct:succinyl-diaminopimelate desuccinylase
Cell Localization:()
Synonyms:PA1162
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:N-succinyl-diaminopimelate deacylase 
Functional Category Confidence Code:5
COGs:COG0624, pfam01546
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0624, ArgE, Acetylornithine deacetylase/Succinyl- diaminopimelate desuccinylase
and related deacylases. Score: 291, 9e-80
pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.  Score: 225, 9e-60






   
Genomic Context:






   
Comment:


















    ReferenceID:3235




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20382




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1616
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2857
                           PA1162_tr
                           translation of PA1162
                           383
                           99.21
                           99.73
                           0
                           1973.0
     

     
     
89032
                           gb|AAG04551.1|AE004546_6
                           (AE004546) succinyl-diaminopimelate desuccinylase [Pseudomonas aeruginosa PAO1]
                           383
                           99.21
                           99.73
                           0
                           1973.0
     

     
     
89033
                           gb|AAN67146.1|AE016343_6
                           (AE016779) succinyl-diaminopimelate desuccinylase [Pseudomonas putida KT2440]
                           384
                           85.93
                           92.70
                           2
                           1739.0
     

     
     
89034
                           gb|AAO55043.1|
                           (AE016861) succinyl-diaminopimelate desuccinylase [Pseudomonas syringae pv. tomato str. DC3000]
                           384
                           84.37
                           93.22
                           2
                           1720.0
     

     
     
89035
                           gb|AAR02167.1|
                           (AY342395) succinyl-diaminopimelate desuccinylase [Pseudomonas syringae pv. syringae]
                           384
                           82.03
                           89.06
                           7
                           1665.0
     

     






      

          
GC ORFID: 44618How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1162Glimmer Score: 

          
Start: 565338Stop: 564187

          
Length: 1152


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1162 translation of PA1162Homolog Bit Score 764.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4807 (ORF: BLASTX 663.0), t_PA1162 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCTCTTCGCCGAGTCTCTCGCCGACCCTCGAACTCGCCTGCGAGTTGATCCGCCGCCCCTCCGTC 
ACGCCCCTCGACGCCGACTGCCAGGCCCTGATGATGCGCCGCCTGGAAGCCGCCGGCTTCGCCCTGGAGCCG 
ATGCGCATTGAGGAGGTGGACAACTTCTGGGCACGGCGCGGCGGCGACGGCCCGGTGCTGTGCTTCGCCGGG 
CACACCGACGTGGTCCCCACCGGCCCGCTGCAGGCCTGGCAGCACCAACCCTTCGACGCCCTGATCGACGAC 
CAGGGCATGCTCTGCGGACGCGGCGCGGCGGACATGAAAGGCAGCCTGGCGTCGATGATCGTCGCCGTCGAG 
CGCTTCGTCGCCGACCACCCGAAGCACAAGGGCGCCATCGCCTTCCTCATCACCAGCGACGAGGAAGGCCCG 
GCCCACCACGGCACCAAGGCGGTGGTCGAACGCCTCGCCGCACGCGGCGAGCGCCTGGACTGGTGCATCGTC 
GGCGAACCGTCGAGCACCAGCCTGGTCGGCGACGTGGTGAAGAACGGCCGCCGCGGCTCCCTTGGCGCCAAG 
CTGACCATCCGCGGCGTACAGGGCCATGTGGCCTACCCGCACCTGGCGAAGAACCCGATCCACCTGGCCGCC 
CCGGCGCTGGCCGAACTGGCGGCGGAACACTGGGACGACGGCAATGCCTTCTTCCCGCCGACCAGCTTCCAG 
GTTTCCAACCTGAACTCCGGCACCGGCGCCACCAACGTCATCCCCGGTGAACTGACCGCGCTGTTCAACTTC 
CGCTTCTCCACTGAATCCACCGTCGAAGGCCTGCAGAAACGCGTCGAGGCGATCCTCGACAAGCACGGCCTG 
GACTGGCACGTCGAATGGGCGCTGTCCGGCCTGCCGTTCCTCACCGAGCCGGGCGAACTGCTCGATGCGGTG 
GCCGCCAGCATCAGGGCGGTCACCGGCCGCGAGGCCCGGCCCTCGACCAGCGGCGGCACCTCCGACGGACGC 
TTCATCGCCACCATGGGCACCCAGGTGGTCGAACTCGGCCCGGTCAACGCCACCATCCACCAGGTCAACGAG 
CGGGTCCTGGCCAGCGACCTGGAGCTGCTCACCGAAATCTACTACCAGACCCTGGTGAGGCTGCTCGCCTGA