ViewGene
Locus Name:
GeneID:
Location:

GeneID:1615
TrivialName: PA14_70620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70620
PAO1 Ortholog Locus:PA5349
Sequence Length:1155
Protein Length:384
Start: 6291697
Stop: 6290543
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08734.1|AE004947_4 (AE004947) probable rubredoxin reductase [Pseudomonas aeruginosa PAO1]
Identities = 384/384 (100%), Positives = 384/384 (100%)
Sequence:
ATGAGCGAGCGTGCGCCCCTGGTAATCATCGGAACCGGCCTGGCGGGCTACAACCTGGCCCGCGAGTGGCGC
AAGCTGGACGGCGAGACGCCGCTGCTGATGATCACCGCCGACGACGGCCGTTCCTATTCCAAGCCGATGCTC
TCTACCGGCTTCTCGAAGAACAAGGACGCCGACGGCCTGGCCATGGCCGAACCGGGCGCCATGGCCGAGCAA
CTGAACGCGCGCATCCTGACCCATACCCGGGTCACCGGTATCGATCCGGGCCATCAGCGGATCTGGATCGGC
GAGGAAGAGGTGCGTTATCGCGACCTGGTCCTGGCCTGGGGCGCGGAGCCGATCCGGGTGCCGGTCGAGGGC
GATGCCCAGGACGCGCTCTACCCGATCAACGACCTGGAAGACTACGCGCGCTTCCGCCAGGCGGCTGCCGGC
AAGCGCCGGGTACTGCTGCTCGGTGCGGGGCTGATCGGTTGCGAATTCGCCAACGACCTCTCCAGCGGCGGC
TACCAGCTCGACGTGGTGGCGCCTTGCGAGCAGGTCATGCCGGGCCTGCTCCACCCGGCCGCGGCAAAGGCC
GTGCAGGCCGGCCTGGAAGGCCTCGGCGTGCGCTTCCACCTGGGGCCGGTGCTGGCCAGCCTGAAGAAGGCC
GGCGAGGGGCTGGAAGCGCATCTTTCGGATGGCGAGGTGATTCCCTGCGACCTGGTCGTCTCCGCCGTCGGC
CTGCGTCCGCGCACCGAACTGGCcTtCGCCGCCGGGCTGGCGGTCAACCGCGGGATCGTCGTCGACCGCTCG
CTGCGCACCTCCCACGCCAACATCTACGCGCTGGGCGACTGCGCCGAAGTGGACGGCCTCAACCTGCTCTAT
GTGATGCCGCTGATGGCTTGCGCACGCGCGCTGGCGCAGACCCTCGCCGGCAACCCCAGCCAGGTGGCCTAC
GGTCCCATGCCGGTGACGGTGAAGACCCCGGCCTGCCCGCTGGTGGTGTCGCCGCCGCCGCGCGGAATGGAT
GGCCAATGGCTAGTGGAAGGCTCTGGAACGGACCTCAAGGTCCTGTGCCGGGATACCGCTGGTCGAGTGATC
GGTTATGCCCTGACCGGAGCGGCGGTGAACGAAAAATTGGCCCTGAACAAAGAGTTACCCGGCCTCATGGCT
TGA
Translation:
MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQ
LNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAG
KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA
GEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRGIVVDRSLRTSHANIYALGDCAEVDGLNLLY
VMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGMDGQWLVEGSGTDLKVLCRDTAGRVI
GYALTGAAVNEKLALNKELPGLMA*
AnnotationID:1624GeneID:1615
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 06:06:54
Gene Name:
Confidence Code:3
GeneProduct:putative rubredoxin reductase
Cell Localization:()
Synonyms:rubB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00070
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58892.1| (AE016875) rubredoxin reductase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 382

 Score =  617 bits (1590), Expect = e-176
 Identities = 297/380 (78%), Positives = 336/380 (88%)

>gb|AAN70879.1|AE016732_4 (AE016794) rubredoxin reductase [Pseudomonas putida KT2440]
          Length = 382

 Score =  609 bits (1570), Expect = e-173
 Identities = 293/380 (77%), Positives = 338/380 (88%)

>emb|CAD85331.1| (BX321861) probable rubredoxin reductase [Nitrosomonas europaea
           ATCC 19718]
          Length = 384

 Score =  318 bits (816), Expect = 3e-86
 Identities = 170/379 (44%), Positives = 233/379 (61%), Gaps = 1/379 (0%)








 
Structural Features:
pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. 
CD-Length = 288 residues,  97.2% aligned
Score =  146 bits (369), Expect = 5e-36
Identities = 85/287 (29%), Positives = 134/287 (46%), Gaps = 19/287 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20380




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34745




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1615_cdd.html


    		




 
URL:

















    ReferenceID:35686




  
Author/Investigator(s):
        Whyte LG, Smits TH, Labbe D, Witholt B, Greer CW, van Beilen JB.





  
Title:
        Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531.




  
PubMed:
        12450813


MedLine:
        




    
Source:
Appl Environ Microbiol. 2002 Dec;68(12):5933-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12450813









           
Homologs By Global Alignment 

           

       



     
Gene ID:1615
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2856
                           PA5349_tr
                           translation of PA5349
                           384
                           99.99
                           99.99
                           0
                           1977.0
     

     
     
89022
                           gb|AAG08734.1|AE004947_4
                           (AE004947) probable rubredoxin reductase [Pseudomonas aeruginosa PAO1]
                           384
                           99.99
                           99.99
                           0
                           1977.0
     

     
     
89023
                           gb|AAO58892.1|
                           (AE016875) rubredoxin reductase [Pseudomonas syringae pv. tomato str. DC3000]
                           384
                           77.86
                           88.02
                           2
                           1588.0
     

     
     
89024
                           gb|AAN70879.1|AE016732_4
                           (AE016794) rubredoxin reductase [Pseudomonas putida KT2440]
                           384
                           76.30
                           88.02
                           2
                           1567.0
     

     
     
89025
                           emb|CAD85331.1|
                           (BX321861) probable rubredoxin reductase [Nitrosomonas europaea ATCC 19718]
                           385
                           44.15
                           60.77
                           2
                           816.0
     

     






      

          
GC ORFID: 44617How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5349Glimmer Score: 

          
Start: 5555386Stop: 5554232

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5349 translation of PA5349Homolog Bit Score 766.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4209 (ORF: BLASTX 609.0), t_PA5349 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGCGTGCGCCCCTGGTAATCATCGGAACCGGCCTGGCGGGCTACAACCTGGCCCGCGAGTGGCGC 
AAGCTGGACGGCGAGACGCCGCTGCTGATGATCACCGCCGACGACGGCCGTTCCTATTCCAAGCCGATGCTC 
TCTACCGGCTTCTCGAAGAACAAGGACGCCGACGGCCTGGCCATGGCCGAACCGGGCGCCATGGCCGAGCAA 
CTGAACGCGCGCATCCTGACCCATACCCGGGTCACCGGTATCGATCCGGGCCATCAGCGGATCTGGATCGGC 
GAGGAAGAGGTGCGTTATCGCGACCTGGTCCTGGCCTGGGGCGCGGAGCCGATCCGGGTGCCGGTCGAGGGC 
GATGCCCAGGACGCGCTCTACCCGATCAACGACCTGGAAGACTACGCGCGCTTCCGCCAGGCGGCTGCCGGC 
AAGCGCCGGGTACTGCTGCTCGGTGCGGGGCTGATCGGTTGCGAATTCGCCAACGACCTCTCCAGCGGCGGC 
TACCAGCTCGACGTGGTGGCGCCTTGCGAGCAGGTCATGCCGGGCCTGCTCCACCCGGCCGCGGCAAAGGCC 
GTGCAGGCCGGCCTGGAAGGCCTCGGCGTGCGCTTCCACCTGGGGCCGGTGCTGGCCAGCCTGAAGAAGGCC 
GGCGAGGGGCTGGAAGCGCATCTTTCGGATGGCGAGGTGATTCCCTGCGACCTGGTCGTCTCCGCCGTCGGC 
CTGCGTCCGCGCACCGAACTGGCcTtCGCCGCCGGGCTGGCGGTCAACCGCGGGATCGTCGTCGACCGCTCG 
CTGCGCACCTCCCACGCCAACATCTACGCGCTGGGCGACTGCGCCGAAGTGGACGGCCTCAACCTGCTCTAT 
GTGATGCCGCTGATGGCTTGCGCACGCGCGCTGGCGCAGACCCTCGCCGGCAACCCCAGCCAGGTGGCCTAC 
GGTCCCATGCCGGTGACGGTGAAGACCCCGGCCTGCCCGCTGGTGGTGTCGCCGCCGCCGCGCGGAATGGAT 
GGCCAATGGCTAGTGGAAGGCTCTGGAACGGACCTCAAGGTCCTGTGCCGGGATACCGCTGGTCGAGTGATC 
GGTTATGCCCTGACCGGAGCGGCGGTGAACGAAAAATTGGCCCTGAACAAAGAGTTACCCGGCCTCATGGCT 
TGA