ViewGene

Locus Name:
GeneID:
Location:

GeneID:1614
TrivialName: PA14_68130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68130
PAO1 Ortholog Locus:PA5159
Sequence Length:1185
Protein Length:394
Start: 6079343
Stop: 6080527
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08544.1|AE004928_10 (AE004928) multidrug resistance protein [Pseudomonas aeruginosa PAO1]
Identities = 392/394 (99%), Positives = 393/394 (99%)
Sequence:
ATGACTACCGCCAACAGCGAAACCCCCGCCGGCAACCCGAAGCGCAAGCGCTGGTTGCTGATCCTGCTCGCC
GTGATCGTCCTCGCCACCCTGGCCAGCGTGGCCTGGGAGTTCTTCTACGGCCGCTGGCACGAGGACACCGAC
GACGCCTACATCAACGGCAACGTGGTACAGATCACCCCGCAGATCGTCGGCACCGTGGTCAGCATCGGCGCC
GACGACGGCGACCTGGTGCGCAAGGGCCAGGAACTGGTCAGGTTCGATCCCAGCGACGCCGACATCGCCCTC
CAGCGCGCCGAGGCCAACCTGGCCCACACCGTGCGCCAGGTACGCGGGCTGTTCAGCAACGTCGACGGCTAT
CGCGCCGAGGTCGCCACCCGCAAGGTCGCGCTGGCCAAGGCCGAGGCCGACTACAAGCGGCGCAAGAACCTC
GCCGACGACGGCGCCATTTCCCAGGAGGAACTGGCCCACGCCCGCGACGCGCTGGACAGCGCGAAAGCCTCG
CTGACCAGCTCGGAACAGCAGTTGAACACCAATCGAGCGCTGGTCGACGACACCCAGATCACCTCCCATCCG
GACGTCAAGGCCGCCGCCGCGCAACTGCGCCAGGCCTACCTGGACGACGCCCGTTCGACCATCGTCGCGCCG
GTCACCGGCTACGTCGCCAAGCGCAGCGTACAGGTCGGCCAGCGCGTGCAACCGGGCAATGCGCTGATGGCC
GTGGTCCCGCTGGACCAGATCTGGATCGACGCCAACTTCAAGGAAACCCAGCTCAAGCACATGCGTATCGGC
CAGCCGGTGGAGATCCGCTCCGACCTCTACGGCAGCGACGTGCGCTACAGCGGCACCGTCGACAGCCTCGGC
GTGGGCACCGGCAGCGCGTTCTCCCTGCTGCCGGCGCAGAACGCCACCGGCAACTGGATCAAGATCGTCCAG
CGGGTGCCGGTGCGCATCCATATCGATCCGCAAGAATTGCAGAAGCATCCGCTGCGCATCGGCCTGTCGATG
GACGTCAAGGTCGACCTGCACGACCAGAGCGGCCCGGCCCTGGCCCTGCAGCCACCGCGCGAAGCGCTGTTC
TCCACCGATGTCTACCAGCAGCAACTGGCCTCGGCCGACAAGCTGATCGAACGCCTGATCGAAGCCAACCTC
GCCGAAGACCACGGCAAGACCGCCCAGCGTTGA
Translation:
MTTANSETPAGNPKRKRWLLILLAVIVLATLASVAWEFFYGRWHEDTDDAYINGNVVQITPQIVGTVVSIGA
DDGDLVRKGQELVRFDPSDADIALQRAEANLAHTVRQVRGLFSNVDGYRAEVATRKVALAKAEADYKRRKNL
ADDGAISQEELAHARDALDSAKASLTSSEQQLNTNRALVDDTQITSHPDVKAAAAQLRQAYLDDARSTIVAP
VTGYVAKRSVQVGQRVQPGNALMAVVPLDQIWIDANFKETQLKHMRIGQPVEIRSDLYGSDVRYSGTVDSLG
VGTGSAFSLLPAQNATGNWIKIVQRVPVRIHIDPQELQKHPLRIGLSMDVKVDLHDQSGPALALQPPREALF
STDVYQQQLASADKLIERLIEANLAEDHGKTAQR*
AnnotationID:1623GeneID:1614
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 18:06:47
Gene Name:
Confidence Code:2
GeneProduct:multidrug resistance protein
Cell Localization:()
Synonyms:PA5159, pmrA, emrA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:multidrug efflux MFS membrane fusion protein
Functional Category Confidence Code:5
COGs:COG1566,pfam00529
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69150.1|AE016548_9 (AE016787) multidrug efflux MFS membrane fusion protein
           [Pseudomonas putida KT2440]
          Length = 397

 Score =  527 bits (1357), Expect = e-149
 Identities = 264/393 (67%), Positives = 318/393 (80%), Gaps = 2/393 (0%)

>gb|AAO57217.1| (AE016869) multidrug resistance protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 402

 Score =  526 bits (1355), Expect = e-149
 Identities = 264/393 (67%), Positives = 322/393 (81%)

>gb|AAM36316.1| (AE011776) multidrug resistance efflux pump [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 397

 Score =  472 bits (1214), Expect = e-132
 Identities = 236/383 (61%), Positives = 298/383 (77%)
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
CD-Length = 352 residues,  96.0% aligned
Score =  336 bits (862), Expect = 3e-93
Identities = 154/338 (45%), Positives = 202/338 (59%), Gaps = 1/338 (0%)

pfam00529, HlyD, HlyD family secretion protein.
CD-Length = 309 residues, 100.0% aligned
Score =  146 bits (370), Expect = 4e-36
Identities = 97/310 (31%), Positives = 140/310 (45%), Gaps = 27/310 (8%)
Genomic Context:
Comment:
ReferenceID:3231
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20378
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34914
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1614_cdd.html
URL:
ReferenceID:35777
Author/Investigator(s): Yang J, Kang HA, Ko SM, Chae SK, Ryu DD, Kim JY.
Title: Cloning of the Aspergillus niger pmrA gene, a homologue of yeast PMR1, and characterization of a pmrA null mutant.
PubMed: 11356574
MedLine:
Source:
FEMS Microbiol Lett. 2001 May 15;199(1):97-102.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11356574
ReferenceID:35778
Author/Investigator(s): Lomovskaya O, Lewis K.
Title: Emr, an Escherichia coli locus for multidrug resistance.
PubMed: 1409590
MedLine:
Source:
Proc Natl Acad Sci U S A. 1992 Oct 1;89(19):8938-42.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1409590
Homologs By Global Alignment
Gene ID:1614

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2855 PA5159_tr translation of PA5159 394 99.49 99.74 0 1978.0
88979 gb|AAG08544.1|AE004928_10 (AE004928) multidrug resistance protein [Pseudomonas aeruginosa PAO1] 394 99.49 99.74 0 1978.0
88980 gb|AAC31387.1| (AF047693) multidrug resistance efflux pump homolog PmrA [Pseudomonas aeruginosa] 394 99.23 99.74 0 1976.0
88981 gb|AAN69150.1|AE016548_9 (AE016787) multidrug efflux MFS membrane fusion protein [Pseudomonas putida KT2440] 399 66.41 80.45 7 1360.0
88982 gb|AAO57217.1| (AE016869) multidrug resistance protein [Pseudomonas syringae pv. tomato str. DC3000] 402 65.67 80.09 8 1354.0
GC ORFID: 44616How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5159Glimmer Score:
Start: 5343029Stop: 5344213
Length: 1185
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5159 translation of PA5159Homolog Bit Score 766.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene758 (ORF: BLASTX 521.0), t_PA5159 (ORF: GLIMMER)
GC ORF Sequence
ATGACTACCGCCAACAGCGAAACCCCCGCCGGCAACCCGAAGCGCAAGCGCTGGTTGCTGATCCTGCTCGCC
GTGATCGTCCTCGCCACCCTGGCCAGCGTGGCCTGGGAGTTCTTCTACGGCCGCTGGCACGAGGACACCGAC
GACGCCTACATCAACGGCAACGTGGTACAGATCACCCCGCAGATCGTCGGCACCGTGGTCAGCATCGGCGCC
GACGACGGCGACCTGGTGCGCAAGGGCCAGGAACTGGTCAGGTTCGATCCCAGCGACGCCGACATCGCCCTC
CAGCGCGCCGAGGCCAACCTGGCCCACACCGTGCGCCAGGTACGCGGGCTGTTCAGCAACGTCGACGGCTAT
CGCGCCGAGGTCGCCACCCGCAAGGTCGCGCTGGCCAAGGCCGAGGCCGACTACAAGCGGCGCAAGAACCTC
GCCGACGACGGCGCCATTTCCCAGGAGGAACTGGCCCACGCCCGCGACGCGCTGGACAGCGCGAAAGCCTCG
CTGACCAGCTCGGAACAGCAGTTGAACACCAATCGAGCGCTGGTCGACGACACCCAGATCACCTCCCATCCG
GACGTCAAGGCCGCCGCCGCGCAACTGCGCCAGGCCTACCTGGACGACGCCCGTTCGACCATCGTCGCGCCG
GTCACCGGCTACGTCGCCAAGCGCAGCGTACAGGTCGGCCAGCGCGTGCAACCGGGCAATGCGCTGATGGCC
GTGGTCCCGCTGGACCAGATCTGGATCGACGCCAACTTCAAGGAAACCCAGCTCAAGCACATGCGTATCGGC
CAGCCGGTGGAGATCCGCTCCGACCTCTACGGCAGCGACGTGCGCTACAGCGGCACCGTCGACAGCCTCGGC
GTGGGCACCGGCAGCGCGTTCTCCCTGCTGCCGGCGCAGAACGCCACCGGCAACTGGATCAAGATCGTCCAG
CGGGTGCCGGTGCGCATCCATATCGATCCGCAAGAATTGCAGAAGCATCCGCTGCGCATCGGCCTGTCGATG
GACGTCAAGGTCGACCTGCACGACCAGAGCGGCCCGGCCCTGGCCCTGCAGCCACCGCGCGAAGCGCTGTTC
TCCACCGATGTCTACCAGCAGCAACTGGCCTCGGCCGACAAGCTGATCGAACGCCTGATCGAAGCCAACCTC
GCCGAAGACCACGGCAAGACCGCCCAGCGTTGA