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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08544.1|AE004928_10 (AE004928) multidrug resistance protein [Pseudomonas aeruginosa PAO1]
Identities = 392/394 (99%), Positives = 393/394 (99%)
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Sequence:
ATGACTACCGCCAACAGCGAAACCCCCGCCGGCAACCCGAAGCGCAAGCGCTGGTTGCTGATCCTGCTCGCC
GTGATCGTCCTCGCCACCCTGGCCAGCGTGGCCTGGGAGTTCTTCTACGGCCGCTGGCACGAGGACACCGAC
GACGCCTACATCAACGGCAACGTGGTACAGATCACCCCGCAGATCGTCGGCACCGTGGTCAGCATCGGCGCC
GACGACGGCGACCTGGTGCGCAAGGGCCAGGAACTGGTCAGGTTCGATCCCAGCGACGCCGACATCGCCCTC
CAGCGCGCCGAGGCCAACCTGGCCCACACCGTGCGCCAGGTACGCGGGCTGTTCAGCAACGTCGACGGCTAT
CGCGCCGAGGTCGCCACCCGCAAGGTCGCGCTGGCCAAGGCCGAGGCCGACTACAAGCGGCGCAAGAACCTC
GCCGACGACGGCGCCATTTCCCAGGAGGAACTGGCCCACGCCCGCGACGCGCTGGACAGCGCGAAAGCCTCG
CTGACCAGCTCGGAACAGCAGTTGAACACCAATCGAGCGCTGGTCGACGACACCCAGATCACCTCCCATCCG
GACGTCAAGGCCGCCGCCGCGCAACTGCGCCAGGCCTACCTGGACGACGCCCGTTCGACCATCGTCGCGCCG
GTCACCGGCTACGTCGCCAAGCGCAGCGTACAGGTCGGCCAGCGCGTGCAACCGGGCAATGCGCTGATGGCC
GTGGTCCCGCTGGACCAGATCTGGATCGACGCCAACTTCAAGGAAACCCAGCTCAAGCACATGCGTATCGGC
CAGCCGGTGGAGATCCGCTCCGACCTCTACGGCAGCGACGTGCGCTACAGCGGCACCGTCGACAGCCTCGGC
GTGGGCACCGGCAGCGCGTTCTCCCTGCTGCCGGCGCAGAACGCCACCGGCAACTGGATCAAGATCGTCCAG
CGGGTGCCGGTGCGCATCCATATCGATCCGCAAGAATTGCAGAAGCATCCGCTGCGCATCGGCCTGTCGATG
GACGTCAAGGTCGACCTGCACGACCAGAGCGGCCCGGCCCTGGCCCTGCAGCCACCGCGCGAAGCGCTGTTC
TCCACCGATGTCTACCAGCAGCAACTGGCCTCGGCCGACAAGCTGATCGAACGCCTGATCGAAGCCAACCTC
GCCGAAGACCACGGCAAGACCGCCCAGCGTTGA |
Translation:
MTTANSETPAGNPKRKRWLLILLAVIVLATLASVAWEFFYGRWHEDTDDAYINGNVVQITPQIVGTVVSIGA
DDGDLVRKGQELVRFDPSDADIALQRAEANLAHTVRQVRGLFSNVDGYRAEVATRKVALAKAEADYKRRKNL
ADDGAISQEELAHARDALDSAKASLTSSEQQLNTNRALVDDTQITSHPDVKAAAAQLRQAYLDDARSTIVAP
VTGYVAKRSVQVGQRVQPGNALMAVVPLDQIWIDANFKETQLKHMRIGQPVEIRSDLYGSDVRYSGTVDSLG
VGTGSAFSLLPAQNATGNWIKIVQRVPVRIHIDPQELQKHPLRIGLSMDVKVDLHDQSGPALALQPPREALF
STDVYQQQLASADKLIERLIEANLAEDHGKTAQR* |
AnnotationID:1623 | GeneID:1614 |
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Modification Date/Time: |
2006-02-03 18:06:47 |
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GeneProduct: | multidrug resistance protein |
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Synonyms: | PA5159, pmrA, emrA |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | multidrug efflux MFS membrane fusion protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN69150.1|AE016548_9 (AE016787) multidrug efflux MFS membrane fusion protein
[Pseudomonas putida KT2440]
Length = 397
Score = 527 bits (1357), Expect = e-149
Identities = 264/393 (67%), Positives = 318/393 (80%), Gaps = 2/393 (0%)
>gb|AAO57217.1| (AE016869) multidrug resistance protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 402
Score = 526 bits (1355), Expect = e-149
Identities = 264/393 (67%), Positives = 322/393 (81%)
>gb|AAM36316.1| (AE011776) multidrug resistance efflux pump [Xanthomonas axonopodis
pv. citri str. 306]
Length = 397
Score = 472 bits (1214), Expect = e-132
Identities = 236/383 (61%), Positives = 298/383 (77%) |
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Structural Features: | COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
CD-Length = 352 residues, 96.0% aligned
Score = 336 bits (862), Expect = 3e-93
Identities = 154/338 (45%), Positives = 202/338 (59%), Gaps = 1/338 (0%)
pfam00529, HlyD, HlyD family secretion protein.
CD-Length = 309 residues, 100.0% aligned
Score = 146 bits (370), Expect = 4e-36
Identities = 97/310 (31%), Positives = 140/310 (45%), Gaps = 27/310 (8%) |
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