ViewGene
Locus Name:
GeneID:
Location:

GeneID:1613
TrivialName: PA14_27200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27200
PAO1 Ortholog Locus:PA2852
Sequence Length:1131
Protein Length:376
Start: 2363130
Stop: 2364260
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06240.1|AE004711_12 (AE004711) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 369/376 (98%), Positives = 371/376 (98%)
Sequence:
ATGGCGAGCTGGGAGATTTTCTGTAGCGTGGTCGACAACTATGGCGACATCGGCGTCACCTGGCGCCTGGCT
CGCCAACTGGCCGCCGAGCACGGTCAGGCCGTGCGCCTGTGGGTGGACGAGCCGCAGGCCTTCGCCCGGATC
TGTCCGCGGGCGGACCCGGCGGCGCACGTGCAGAGCCTGGATGGGGTCGAAGTGCGTGCCTGGGGCCGGCCG
TGGGCACCGGTGGCGGCCGCCGACGTGGTGATCGAGGCCTTCGCCTGCGAACTGCCGGAGGCGCACCGGCAG
GCCATGCGCGAGCGCGAGCGGCCGTCCCTGTGGCTGAACCTGGAGTACCTGAGTGCCGAGGAATGGATCGGC
AGTTGCCACGCATTGCCGTCGCTGCAGGCGTGCGGGCTTTCCAAGTACTTCTTCTTTCCCGGGTTCCGCGAG
CCCAGTGGCGGCCTGTTGCGCGAGGCCGGCCTGCTGGAACGTCGGCGCCGTTTCCAGGCCTCTGCCTCGGCG
CAGGATGAGTTTCTCGCCTCCCTCGGCGTGCGGCGGAAGGTTGGCGAGCGACTGATTTCGCTGTTTGCCTAC
GAAAACCCGGCGCTGTCTGGCTGGCTGGAACAACTGCGCGACGCCCGCCAGCCGAGCCTGCTGCTGGTGCCG
GAGGGGCGGGTGCTGGCGGATGTCGCCGATTGGCTGCGGGTGGCTACCCTGGCCGTCGGGGACGTCCATGTG
CGCGACGCGTTGCGGGTCCAGGTGCTGCCGTTCATGGCGCAGGACGACTACGATCGCCTGTTGTGGTGCTGC
GACCTGAACGCGGTGCGCGGCGAGGACTCCTTCGTTCGCGCGCAGTGGGCGGGACGGCCGCTGCTCTGGCAC
ATCTATAGACAGGAAGAGGAGGCGCACCTGGCGAAGCTCGAGGCATTCCTCGAACTCTATTGCGCCGGCCTG
CCCGCCGACCTGGCGGAAAACCTGCGCACCTTCTGGCTGGCGTGGAACGCCGGCGGTGGACTTGCCGGGGCC
TGGGAGGGGCTGGAGAGGCAACTGCCCGAGTGGCGTAGGGAAGCGCAGCGCTGGGCCGACGAACAGGGCATG
CGTCCGGATCTTGCGGCAAGGCTGGTGCAATTTTACGCAGATTGGCTATGA
Translation:
MASWEIFCSVVDNYGDIGVTWRLARQLAAEHGQAVRLWVDEPQAFARICPRADPAAHVQSLDGVEVRAWGRP
WAPVAAADVVIEAFACELPEAHRQAMRERERPSLWLNLEYLSAEEWIGSCHALPSLQACGLSKYFFFPGFRE
PSGGLLREAGLLERRRRFQASASAQDEFLASLGVRRKVGERLISLFAYENPALSGWLEQLRDARQPSLLLVP
EGRVLADVADWLRVATLAVGDVHVRDALRVQVLPFMAQDDYDRLLWCCDLNAVRGEDSFVRAQWAGRPLLWH
IYRQEEEAHLAKLEAFLELYCAGLPADLAENLRTFWLAWNAGGGLAGAWEGLERQLPEWRREAQRWADEQGM
RPDLAARLVQFYADWL*
AnnotationID:1622GeneID:1613
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 05:05:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2852
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3229




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20376




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36178




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1613_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1613
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2854
                           PA2852_tr
                           translation of PA2852
                           376
                           98.13
                           98.67
                           0
                           1979.0
     

     
     
88969
                           gb|AAG06240.1|AE004711_12
                           (AE004711) hypothetical protein PA2852 [Pseudomonas aeruginosa PAO1]
                           376
                           98.13
                           98.67
                           0
                           1979.0
     

     
     
88970
                           gb|AAN67476.1|AE016374_8
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           377
                           59.68
                           68.16
                           1
                           1146.0
     

     
     
88971
                           gb|AAO55284.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           378
                           54.76
                           66.40
                           2
                           1099.0
     

     
     
88972
                           gb|AAQ59054.2|
                           (AE016914) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           382
                           48.42
                           58.63
                           31
                           854.0
     

     






      

          
GC ORFID: 44615How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2852Glimmer Score: 

          
Start: 2590797Stop: 2589667

          
Length: 1131


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2852 translation of PA2852Homolog Bit Score 766.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7749 (ORF: BLASTX 430.0), t_PA2852 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGAGCTGGGAGATTTTCTGTAGCGTGGTCGACAACTATGGCGACATCGGCGTCACCTGGCGCCTGGCT 
CGCCAACTGGCCGCCGAGCACGGTCAGGCCGTGCGCCTGTGGGTGGACGAGCCGCAGGCCTTCGCCCGGATC 
TGTCCGCGGGCGGACCCGGCGGCGCACGTGCAGAGCCTGGATGGGGTCGAAGTGCGTGCCTGGGGCCGGCCG 
TGGGCACCGGTGGCGGCCGCCGACGTGGTGATCGAGGCCTTCGCCTGCGAACTGCCGGAGGCGCACCGGCAG 
GCCATGCGCGAGCGCGAGCGGCCGTCCCTGTGGCTGAACCTGGAGTACCTGAGTGCCGAGGAATGGATCGGC 
AGTTGCCACGCATTGCCGTCGCTGCAGGCGTGCGGGCTTTCCAAGTACTTCTTCTTTCCCGGGTTCCGCGAG 
CCCAGTGGCGGCCTGTTGCGCGAGGCCGGCCTGCTGGAACGTCGGCGCCGTTTCCAGGCCTCTGCCTCGGCG 
CAGGATGAGTTTCTCGCCTCCCTCGGCGTGCGGCGGAAGGTTGGCGAGCGACTGATTTCGCTGTTTGCCTAC 
GAAAACCCGGCGCTGTCTGGCTGGCTGGAACAACTGCGCGACGCCCGCCAGCCGAGCCTGCTGCTGGTGCCG 
GAGGGGCGGGTGCTGGCGGATGTCGCCGATTGGCTGCGGGTGGCTACCCTGGCCGTCGGGGACGTCCATGTG 
CGCGACGCGTTGCGGGTCCAGGTGCTGCCGTTCATGGCGCAGGACGACTACGATCGCCTGTTGTGGTGCTGC 
GACCTGAACGCGGTGCGCGGCGAGGACTCCTTCGTTCGCGCGCAGTGGGCGGGACGGCCGCTGCTCTGGCAC 
ATCTATAGACAGGAAGAGGAGGCGCACCTGGCGAAGCTCGAGGCATTCCTCGAACTCTATTGCGCCGGCCTG 
CCCGCCGACCTGGCGGAAAACCTGCGCACCTTCTGGCTGGCGTGGAACGCCGGCGGTGGACTTGCCGGGGCC 
TGGGAGGGGCTGGAGAGGCAACTGCCCGAGTGGCGTAGGGAAGCGCAGCGCTGGGCCGACGAACAGGGCATG 
CGTCCGGATCTTGCGGCAAGGCTGGTGCAATTTTACGCAGATTGGCTATGA