ViewGene
Locus Name:
GeneID:
Location:

GeneID:1611
TrivialName: PA14_03810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03810
PAO1 Ortholog Locus:PA0292
Sequence Length:1107
Protein Length:368
Start: 344032
Stop: 342926
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03681.1|AE004467_3 (AE004467) agmatine deiminase [Pseudomonas aeruginosa PAO1]
Identities = 364/368 (98%), Positives = 366/368 (99%)
Sequence:
ATGAGCAACCCGACCAGCACCCCACGCGCCGACGGCTTCCGCATGCCCGCCGAATGGGAACCCCACGAGCAG
ACCTGGATGGTCTGGCCGGAACGCCCGGACAACTGGCGCAACGGCGGCAAGCCGGCCCAGGCGGCCTTCGCC
GCGGTGGCCAAGGCCATCGCGCGCTTCGAGCCGGTCACCGTCTGCGCCAGCGCCGGGCAGTACGAGAACGCG
CGCGCGCGCCTCGACGACGGCAACATCCGCGTAGTGGAAATCAGCAGCGACGATGCCTGGGTCCGCGACACC
GGCCCAACCTTCGTCATCGACGACAAGGGCGATGTACGCGGCGTCGACTGGGGCTTCAACGCCTGGGGTGGC
TTCGAAGGCGGCCTGTACTTCCCCTGGCAGCGCGACGACCAGGTGGCACGCAAGATCCTCGAGATCGAACGG
CGCGCCCGCTACCGCACCGACGACTTCGTCCTCGAGGGCGGCTCGATCCACGTCGACGGCGAAGGCACGCTG
ATCACCACCGAGGAATGCCTGCTCAACCACAACCGCAATCCGCACCTGAGCCAGGTGGAGATCGAGCGAACC
CTGCGCGACTACCTTGCGGTGGACAGCATCATCTGGCTGCCGAACGGCCTCTACAACGACGAGACCGACGGC
CACGTCGACAACTTCTGCTGCTACGTGCGTCCCGGCGAGGTGCTGCTGGCCTGGACCGACGACCAGGATGAC
CCGAACTACCTGCGCTGCCAGGCCGCCCTCCGCGTGCTGGAAGAAAGCCGCGACGCCAAGGGACGCAAGCTG
GTGGTGCACAAGATGCCGATCCCCGGCCCGCTGTACGCGACCCAGGAAGAGTGCGACGGCGTGGATATCGTC
GAGGGCAGCCAGCCGCGCGATCCCTCCATTCGCCTGGCCGGTTCCTACGTGAACTTCCTGATCGTCAACGGC
GGCATCGTCGCGCCGAGCTTCGACGATCCCAAGGACGCCGAGGCCAGGGCGATACTCCAGCGCGTGTTCCCC
GAGCACGAGGTGGTGATGGTCCCGGGGCGCGAGATCCTCCTCGGCGGCGGCAACATCCATTGCATCACCCAG
CAGCAACCGGCGCCGCGCAAGGCCTGA
Translation:
MSNPTSTPRADGFRMPAEWEPHEQTWMVWPERPDNWRNGGKPAQAAFAAVAKAIARFEPVTVCASAGQYENA
RARLDDGNIRVVEISSDDAWVRDTGPTFVIDDKGDVRGVDWGFNAWGGFEGGLYFPWQRDDQVARKILEIER
RARYRTDDFVLEGGSIHVDGEGTLITTEECLLNHNRNPHLSQVEIERTLRDYLAVDSIIWLPNGLYNDETDG
HVDNFCCYVRPGEVLLAWTDDQDDPNYLRCQAALRVLEESRDAKGRKLVVHKMPIPGPLYATQEECDGVDIV
EGSQPRDPSIRLAGSYVNFLIVNGGIVAPSFDDPKDAEARAILQRVFPEHEVVMVPGREILLGGGNIHCITQ
QQPAPRKA*
AnnotationID:1620GeneID:1611
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:44
Gene Name:aguA
Confidence Code:1
GeneProduct:agmatine deiminase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2957,pfam04371
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2957,Peptidylarginine deiminase and related enzymes 
[Amino acid transport and metabolism]
CD-Length = 346 residues,  99.4% aligned
Score =  529 bits (1365), Expect = 2e-151
Identities = 207/365 (56%), Positives = 253/365 (69%), Gaps = 21/365 (5%)

pfam02274, Amidinotransf, Amidinotransferase. 
CD-Length = 329 residues, 100.0% aligned
Score =  512 bits (1319), Expect = 3e-146
Identities = 223/352 (63%), Positives = 261/352 (74%), Gaps = 24/352 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3225




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20372




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33643




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1611_cdd.html


    		




 
URL:

















    ReferenceID:35436




  
Author/Investigator(s):
        Nakada Y, Jiang Y, Nishijyo T, Itoh Y, Lu CD.





  
Title:
        Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1.




  
PubMed:
        11673419


MedLine:
        




    
Source:
J Bacteriol. 2001 Nov;183(22):6517-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11673419









           
Homologs By Global Alignment 

           

       



     
Gene ID:1611
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2852
                           PA0292_tr
                           translation of PA0292
                           368
                           98.91
                           99.45
                           0
                           1980.0
     

     
     
88916
                           gb|AAG03681.1|AE004467_3
                           (AE004467) agmatine deiminase [Pseudomonas aeruginosa PAO1]
                           368
                           98.91
                           99.45
                           0
                           1980.0
     

     
     
88917
                           gb|AAN65897.1|AE016217_9
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           368
                           78.53
                           88.04
                           0
                           1618.0
     

     
     
88918
                           gb|AAO58815.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           368
                           77.17
                           86.41
                           0
                           1576.0
     

     
     
88919
                           gb|AAD47622.1|
                           (AF153708) unknown [Pseudomonas sp. BG33R]
                           381
                           69.02
                           74.80
                           18
                           1391.0
     

     






      

          
GC ORFID: 44613How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0292Glimmer Score: 

          
Start: 6145373Stop: 6144267

          
Length: 1107


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0292 translation of PA0292Homolog Bit Score 767.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2439 (ORF: BLASTX 608.0), t_PA0292 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACCCGACCAGCACCCCACGCGCCGACGGCTTCCGCATGCCCGCCGAATGGGAACCCCACGAGCAG 
ACCTGGATGGTCTGGCCGGAACGCCCGGACAACTGGCGCAACGGCGGCAAGCCGGCCCAGGCGGCCTTCGCC 
GCGGTGGCCAAGGCCATCGCGCGCTTCGAGCCGGTCACCGTCTGCGCCAGCGCCGGGCAGTACGAGAACGCG 
CGCGCGCGCCTCGACGACGGCAACATCCGCGTAGTGGAAATCAGCAGCGACGATGCCTGGGTCCGCGACACC 
GGCCCAACCTTCGTCATCGACGACAAGGGCGATGTACGCGGCGTCGACTGGGGCTTCAACGCCTGGGGTGGC 
TTCGAAGGCGGCCTGTACTTCCCCTGGCAGCGCGACGACCAGGTGGCACGCAAGATCCTCGAGATCGAACGG 
CGCGCCCGCTACCGCACCGACGACTTCGTCCTCGAGGGCGGCTCGATCCACGTCGACGGCGAAGGCACGCTG 
ATCACCACCGAGGAATGCCTGCTCAACCACAACCGCAATCCGCACCTGAGCCAGGTGGAGATCGAGCGAACC 
CTGCGCGACTACCTTGCGGTGGACAGCATCATCTGGCTGCCGAACGGCCTCTACAACGACGAGACCGACGGC 
CACGTCGACAACTTCTGCTGCTACGTGCGTCCCGGCGAGGTGCTGCTGGCCTGGACCGACGACCAGGATGAC 
CCGAACTACCTGCGCTGCCAGGCCGCCCTCCGCGTGCTGGAAGAAAGCCGCGACGCCAAGGGACGCAAGCTG 
GTGGTGCACAAGATGCCGATCCCCGGCCCGCTGTACGCGACCCAGGAAGAGTGCGACGGCGTGGATATCGTC 
GAGGGCAGCCAGCCGCGCGATCCCTCCATTCGCCTGGCCGGTTCCTACGTGAACTTCCTGATCGTCAACGGC 
GGCATCGTCGCGCCGAGCTTCGACGATCCCAAGGACGCCGAGGCCAGGGCGATACTCCAGCGCGTGTTCCCC 
GAGCACGAGGTGGTGATGGTCCCGGGGCGCGAGATCCTCCTCGGCGGCGGCAACATCCATTGCATCACCCAG 
CAGCAACCGGCGCCGCGCAAGGCCTGA