ViewGene

Locus Name:
GeneID:
Location:

GeneID:161
TrivialName: PA14_66670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66670
PAO1 Ortholog Locus:PA5045
Sequence Length:2472
Protein Length:823
Start: 5952288
Stop: 5954759
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08430.1|AE004917_9 (AE004917) penicillin-binding protein 1A [Pseudomonas aeruginosa PAO1]
Identities = 820/823 (99%), Positives = 820/823 (99%), Gaps = 1/823 (0%)
Sequence:
ATGCGCCTGCTGAAGTTCCTGTGGTGGACTTGCGTCACCCTGATTTGTGGAGTGCTGCTCAGTTTCAGCGGC
GCCTATCTCTATCTGAGTCCCAGCCTGCCCTCGGTGGAAGCTCTGCGTAACGTCCAGCTGCAGATCCCCCTC
AAGGTCTACAGCGAGGACGGCAAGCTGATCTCCGAGTTCGGCGAGATGCGCCGGACGCCGATCCGCTTCGCC
GACATCCCGCAGGACTTCATCCATGCCCTGCTGTCCGCCGAGGACGACAATTTCGCCAACCATTATGGCGTC
GATGTGAAAAGCCTAATGCGCGCCGCCGCGCAATTATTGAAAAGCGGTCACATCCAGACTGGCGGCAGCACC
ATCACCATGCAGGTAGCGAAGAACTACTTCCTTACCAATGAAAGAAGCTTCTCGCGAAAGATCAATGAAATC
CTCCTGGCCCTGCAGATCGAGCGACAGCTGACCAAGGACGAGATCCTCGAGCTCTACGTCAACAAGATCTAC
CTGGGCAACCGTGCCTATGGCATCGAGGCTGCCGCACAGGTCTATTACGGCAAGCCGATCAAAGACTTGAGC
CTGGCCGAGATGGCGATGATCGCCGGCCTGCCGAAAGCGCCCTCGCGCTACAACCCGCTGGTCAACCCGACC
CGCAGTACGGAGCGGCGCAACTGGATCCTCGAGCGCATGCTCAAGCTCGGCTTCATCGACCAGCAACGCTAC
CAGGCCGCCGTCGAGGAGCCGATCAACGCCTCCTACCACGTGCAGACCCCCGAACTGAATGCGCCCTACATC
GCCGAGATGGCCCGTGCCGAGATGGTCGGCCGCTACGGCAGCGAGGCCTATACCGAGGGCTACAAGGTCATC
ACCACGGTCCGCAGCGACCTGCAGAACGCCGCCAGCCAATCGGTCCGCGACGGCCTCATCGACTATGACCAG
CGCCACGGCTACCGCGGCCCGGAGACCCGCCTGCCGGGCCAGACCCGCGACGCCTGGCTCAAGCACCTGGGC
CAGCAGCGCAGCATCGGCGGCCTGGAGCCGGCGATCGTCACCCAGGTGGAAAAGAGCGGGATCATGGTGATG
ACCCGCGACGGCAAGGAAGAAGCCGTGACCTGGGACAGCATGAAATGGGCCCGCCCCTTCCTCAGCAACAAC
AGCATGGGCCCGATGCCGCGCCAGCCCGCCGACGTGGCCCAGGCCGGCGACCAGATCCGCGTGCAGCGCCAG
GAAGACGGCACCCTGCGCTTCGTACAGACTCCCGCCGCACAGAGCGCGCTGATCTCCCTGGACCCGAAGGAC
GGGGCGATCCGCTCGCTGGTCGGCGGCTTCTCCTTCGAGCAGAGCAACTACAACCGCGCGATCCAGGCCAAG
CGCCAGCCGGGCTCCAGTTTCAAGCCGTTCATCTACAGCGCGGCCCTGGACAACGGCTTCACCGCCGCCAGC
CTGGTCAACGATGCGCCGATCGTGTTCGTCGACGAGTACCTGGACAAGGTCTGGCGACCGAAGAACGACACC
AATACCTTCCTCGGCCCGATCCCGCTGCGCGAAGCCCTGTACAAGTCCCGCAACATGGTCTCGATCCGCGTC
CTGCAGGGCCTGGGCATCGAGCGGGCGATCAGCTACATCACCAAGTTCGGCTTCCAGCGCGACGAACTGCCG
CGCAACTTCTCCCTGGCCCTGGGTACCGCGACAGTCACACCGATGGAAATCGCCGGCGCCTGGAGCGTATTC
GCCAACGGCGGCTACAAGGTCAATCCGTACGTCATCGAACGCATCGAGAGCCGCGACGGACAGGTGCTGTAC
CAGGCCAATCCGCCCCGCGTGCCGGTGGAAGAACAGGTCGCTGCGCCGGATGCGGAAGACGCCGGGAAACCT
GGCGACCCCGAGCATCCGGAGAGCGCCGAAGGCGAAGGTTCGATCGAAGCCCAGCAAGTCGCCGCCAAGGCC
CAGACCACCTTCGAGCCGACCCCGGCCGAACGGATCATCGATGCCCGTACCGCCTATATCATGACCAGCATG
CTGCAGGACGTGATCAAGCGCGGTACCGGGCGCCGCGCCCTGGCGCTGAAGCGCACCGACCTGGCCGGCAAG
ACCGGCACCACCAACGATTCCAAGGATGGCTGGTTCTCCGGCTACAACTCCGACTACGTGACCAGCGTCTGG
GTCGGCTTCGACCAGCCGGAGACCCTGGGTCGCCGCGAGTACGGCGGTACCGTCGCGCTGCCGATCTGGATC
AGGTACATGGGCTTCGCCCTCAAGGACAAGCCGATGCACACCATGGCCGAGCCGCCAGGCATCGTCAGCCTG
CGCATCGACCCGGTAACCGGCCGTTCGGCCGCGCCGGGCACTCCCGGCGCCTATTTCGAGATGTTCAAGAAC
GAGGACACCCCGCCCTCGGTCAACGAACTGCCGCCGGGCAGCTTCCCTGGCAGCCCGCTGCCGGATGACGAA
GGCGCGCCGATCGACCTGTTCTGA
Translation:
MRLLKFLWWTCVTLICGVLLSFSGAYLYLSPSLPSVEALRNVQLQIPLKVYSEDGKLISEFGEMRRTPIRFA
DIPQDFIHALLSAEDDNFANHYGVDVKSLMRAAAQLLKSGHIQTGGSTITMQVAKNYFLTNERSFSRKINEI
LLALQIERQLTKDEILELYVNKIYLGNRAYGIEAAAQVYYGKPIKDLSLAEMAMIAGLPKAPSRYNPLVNPT
RSTERRNWILERMLKLGFIDQQRYQAAVEEPINASYHVQTPELNAPYIAEMARAEMVGRYGSEAYTEGYKVI
TTVRSDLQNAASQSVRDGLIDYDQRHGYRGPETRLPGQTRDAWLKHLGQQRSIGGLEPAIVTQVEKSGIMVM
TRDGKEEAVTWDSMKWARPFLSNNSMGPMPRQPADVAQAGDQIRVQRQEDGTLRFVQTPAAQSALISLDPKD
GAIRSLVGGFSFEQSNYNRAIQAKRQPGSSFKPFIYSAALDNGFTAASLVNDAPIVFVDEYLDKVWRPKNDT
NTFLGPIPLREALYKSRNMVSIRVLQGLGIERAISYITKFGFQRDELPRNFSLALGTATVTPMEIAGAWSVF
ANGGYKVNPYVIERIESRDGQVLYQANPPRVPVEEQVAAPDAEDAGKPGDPEHPESAEGEGSIEAQQVAAKA
QTTFEPTPAERIIDARTAYIMTSMLQDVIKRGTGRRALALKRTDLAGKTGTTNDSKDGWFSGYNSDYVTSVW
VGFDQPETLGRREYGGTVALPIWIRYMGFALKDKPMHTMAEPPGIVSLRIDPVTGRSAAPGTPGAYFEMFKN
EDTPPSVNELPPGSFPGSPLPDDEGAPIDLF*
AnnotationID:171GeneID:161
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 10:10:29
Gene Name:ponA
Confidence Code:1
GeneProduct:penicillin-binding protein 1A
Cell Localization:()
Synonyms:mrcA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:peptidoglycan synthetase
Functional Category Confidence Code:5
COGs:COG5009,pfam00912
Secondary Functional Category(ies):central intermediary metabolism
EC Number:2.4.2.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70649.1|AE016709_1 (AE016793) penicillin-binding protein [Pseudomonas putida KT2440]
          Length = 817

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 602/823 (73%), Positives = 699/823 (84%), Gaps = 7/823 (0%)

>gb|AAO58560.1| (AE016874) penicillin-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 814

 Score = 1221 bits (3158), Expect = 0.0
 Identities = 599/824 (72%), Positives = 698/824 (84%), Gaps = 12/824 (1%)

>gb|AAK00346.1|AF329876_2 (AF329876) putative penicillin binding protein [Acinetobacter sp.
           BD413]
          Length = 852

 Score =  671 bits (1730), Expect = 0.0
 Identities = 352/747 (47%), Positives = 475/747 (63%), Gaps = 20/747 (2%)
Structural Features:
COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 797 residues,  99.9% aligned
Score = 1038 bits (2685), Expect = 0.0
Identities = 411/834 (49%), Positives = 525/834 (62%), Gaps = 49/834 (5%)

pfam00912, Transgly, Transglycosylase.
CD-Length = 169 residues,  99.4% aligned
Score =  249 bits (637), Expect = 1e-66
Identities = 97/168 (57%), Positives = 123/168 (73%), Gaps = 1/168 (0%)
Genomic Context:
Comment:
ReferenceID:325
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17467
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35035
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:161_cdd.html
URL:
ReferenceID:35843
Author/Investigator(s): Handfield J, Gagnon L, Dargis M, Huletsky A.
Title: Sequence of the ponA gene and characterization of the penicillin-binding protein 1A of Pseudomonas aeruginosa PAO1.
PubMed: 9358038
MedLine:
Source:
Gene. 1997 Oct 15;199(1-2):49-56.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9358038
Homologs By Global Alignment
Gene ID:161

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
292 PA5045_tr translation of PA5045 823 99.63 99.63 1 4237.0
18722 gb|AAG08430.1|AE004917_9 (AE004917) penicillin-binding protein 1A [Pseudomonas aeruginosa PAO1] 823 99.63 99.63 1 4237.0
18723 gb|AAB39710.1| (U73780) penicillin-binding protein 1A [Pseudomonas aeruginosa] 823 99.63 99.63 1 4237.0
18724 gb|AAN70649.1|AE016709_1 (AE016793) penicillin-binding protein [Pseudomonas putida KT2440] 827 73.03 84.76 14 3197.0
18725 gb|AAO58560.1| (AE016874) penicillin-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 835 71.73 83.59 33 3178.0
GC ORFID: 43163How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5045Glimmer Score:
Start: 5215971Stop: 5218442
Length: 2472
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5045 translation of PA5045Homolog Bit Score 1635.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3782 (ORF: BLASTX 1216.0), t_PA5045 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCTGCTGAAGTTCCTGTGGTGGACTTGCGTCACCCTGATTTGTGGAGTGCTGCTCAGTTTCAGCGGC
GCCTATCTCTATCTGAGTCCCAGCCTGCCCTCGGTGGAAGCTCTGCGTAACGTCCAGCTGCAGATCCCCCTC
AAGGTCTACAGCGAGGACGGCAAGCTGATCTCCGAGTTCGGCGAGATGCGCCGGACGCCGATCCGCTTCGCC
GACATCCCGCAGGACTTCATCCATGCCCTGCTGTCCGCCGAGGACGACAATTTCGCCAACCATTATGGCGTC
GATGTGAAAAGCCTAATGCGCGCCGCCGCGCAATTATTGAAAAGCGGTCACATCCAGACTGGCGGCAGCACC
ATCACCATGCAGGTAGCGAAGAACTACTTCCTTACCAATGAAAGAAGCTTCTCGCGAAAGATCAATGAAATC
CTCCTGGCCCTGCAGATCGAGCGACAGCTGACCAAGGACGAGATCCTCGAGCTCTACGTCAACAAGATCTAC
CTGGGCAACCGTGCCTATGGCATCGAGGCTGCCGCACAGGTCTATTACGGCAAGCCGATCAAAGACTTGAGC
CTGGCCGAGATGGCGATGATCGCCGGCCTGCCGAAAGCGCCCTCGCGCTACAACCCGCTGGTCAACCCGACC
CGCAGTACGGAGCGGCGCAACTGGATCCTCGAGCGCATGCTCAAGCTCGGCTTCATCGACCAGCAACGCTAC
CAGGCCGCCGTCGAGGAGCCGATCAACGCCTCCTACCACGTGCAGACCCCCGAACTGAATGCGCCCTACATC
GCCGAGATGGCCCGTGCCGAGATGGTCGGCCGCTACGGCAGCGAGGCCTATACCGAGGGCTACAAGGTCATC
ACCACGGTCCGCAGCGACCTGCAGAACGCCGCCAGCCAATCGGTCCGCGACGGCCTCATCGACTATGACCAG
CGCCACGGCTACCGCGGCCCGGAGACCCGCCTGCCGGGCCAGACCCGCGACGCCTGGCTCAAGCACCTGGGC
CAGCAGCGCAGCATCGGCGGCCTGGAGCCGGCGATCGTCACCCAGGTGGAAAAGAGCGGGATCATGGTGATG
ACCCGCGACGGCAAGGAAGAAGCCGTGACCTGGGACAGCATGAAATGGGCCCGCCCCTTCCTCAGCAACAAC
AGCATGGGCCCGATGCCGCGCCAGCCCGCCGACGTGGCCCAGGCCGGCGACCAGATCCGCGTGCAGCGCCAG
GAAGACGGCACCCTGCGCTTCGTACAGACTCCCGCCGCACAGAGCGCGCTGATCTCCCTGGACCCGAAGGAC
GGGGCGATCCGCTCGCTGGTCGGCGGCTTCTCCTTCGAGCAGAGCAACTACAACCGCGCGATCCAGGCCAAG
CGCCAGCCGGGCTCCAGTTTCAAGCCGTTCATCTACAGCGCGGCCCTGGACAACGGCTTCACCGCCGCCAGC
CTGGTCAACGATGCGCCGATCGTGTTCGTCGACGAGTACCTGGACAAGGTCTGGCGACCGAAGAACGACACC
AATACCTTCCTCGGCCCGATCCCGCTGCGCGAAGCCCTGTACAAGTCCCGCAACATGGTCTCGATCCGCGTC
CTGCAGGGCCTGGGCATCGAGCGGGCGATCAGCTACATCACCAAGTTCGGCTTCCAGCGCGACGAACTGCCG
CGCAACTTCTCCCTGGCCCTGGGTACCGCGACAGTCACACCGATGGAAATCGCCGGCGCCTGGAGCGTATTC
GCCAACGGCGGCTACAAGGTCAATCCGTACGTCATCGAACGCATCGAGAGCCGCGACGGACAGGTGCTGTAC
CAGGCCAATCCGCCCCGCGTGCCGGTGGAAGAACAGGTCGCTGCGCCGGATGCGGAAGACGCCGGGAAACCT
GGCGACCCCGAGCATCCGGAGAGCGCCGAAGGCGAAGGTTCGATCGAAGCCCAGCAAGTCGCCGCCAAGGCC
CAGACCACCTTCGAGCCGACCCCGGCCGAACGGATCATCGATGCCCGTACCGCCTATATCATGACCAGCATG
CTGCAGGACGTGATCAAGCGCGGTACCGGGCGCCGCGCCCTGGCGCTGAAGCGCACCGACCTGGCCGGCAAG
ACCGGCACCACCAACGATTCCAAGGATGGCTGGTTCTCCGGCTACAACTCCGACTACGTGACCAGCGTCTGG
GTCGGCTTCGACCAGCCGGAGACCCTGGGTCGCCGCGAGTACGGCGGTACCGTCGCGCTGCCGATCTGGATC
AGGTACATGGGCTTCGCCCTCAAGGACAAGCCGATGCACACCATGGCCGAGCCGCCAGGCATCGTCAGCCTG
CGCATCGACCCGGTAACCGGCCGTTCGGCCGCGCCGGGCACTCCCGGCGCCTATTTCGAGATGTTCAAGAAC
GAGGACACCCCGCCCTCGGTCAACGAACTGCCGCCGGGCAGCTTCCCTGGCAGCCCGCTGCCGGATGACGAA
GGCGCGCCGATCGACCTGTTCTGA