ViewGene

Locus Name:
GeneID:
Location:

GeneID:1609
TrivialName: PA14_38440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38440
PAO1 Ortholog Locus:PA2015
Sequence Length:1164
Protein Length:387
Start: 3427846
Stop: 3429009
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05403.1|AE004628_1 (AE004628) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 386/387 (99%), Positives = 386/387 (99%)
Sequence:
ATGACCTATCCCAGCCTCAACTTCGCCCTCGGCGAAACCATCGACATGCTCCGCGACCAGGTCCGCGGCTTC
GTCACCGCCGAACTGCAGCCGCGCGCCGCGCAGATCGACCAGGACAACCAGTTCCCCATGGACATGTGGCGC
AAGTTCGGCGAGATGGGCCTGCTCGGCATCACCGTCGACGAGGAGTACGGCGGTTCGGCGCTGGGCTACCTG
GCACACGCCGTGGTCATGGAAGAGATCAGCCGGGCCTCGGCCTCGGTGGCGCTCTCCTATGGCGCGCATTCC
AACCTCTGCGTCAACCAGATCAAGCGCAACGGCAACGCCGAACAGAAGGCCCGCTACCTGCCGGCCCTGGTG
TCCGGCGAACACATCGGTGCGCTGGCGATGAGCGAACCCAACGCCGGCTCCGACGTGGTCTCGATGAAGCTG
CGCGCGGACCGGGTCGGCGACCGCTTCGTTCTCAACGGCAGCAAGATGTGGATCACCAACGGTCCCGATGCC
CATACCTATGTGATCTACGCCAAGACCGACGCGGACAAGGGCGCGCACGGGATCACCGCGTTCATCGTCGAG
CGCGACTGGAAAGGCTTCAGTCGCGGGCCGAAGCTGGACAAGCTGGGCATGCGCGGCTCGAACACCTGCGAA
CTGATCTTCCAGGACGTCGAGGTACCCGAGGAGAACGTCCTCGGCGCGGTCAACGGAGGGGTCAAGGTACTG
ATGAGCGGCCTCGACTACGAGCGCGTGGTGCTTTCCGGCGGCCCGGTGGGAATCATGCAGGCGTGCATGGAC
GTGGTGGTGCCGTACATCCATGACCGCCGCCAGTTCGGCCAGAGCATCGGCGAATTCCAGCTGGTCCAGGGC
AAGGTGGCCGACATGTACACCGCCCTCAACGCCAGCCGCGCCTACCTATACGCCGTGGCCGCCGCCTGCGAC
CGCGGCGAGACGACCCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAGCGCGCCACCCAGATGGCC
CTGGACGCGATCCAGATCCTCGGCGGCAACGGCTACATCAACGAGTTTCCCACCGGCCGCCTGTTGCGCGAC
GCCAAGCTCTACGAGATCGGCGCCGGCACCAGCGAGATCCGCCGCATGCTGATCGGCCGCGAGCTGTTCAAC
GAAACCCGCTGA
Translation:
MTYPSLNFALGETIDMLRDQVRGFVTAELQPRAAQIDQDNQFPMDMWRKFGEMGLLGITVDEEYGGSALGYL
AHAVVMEEISRASASVALSYGAHSNLCVNQIKRNGNAEQKARYLPALVSGEHIGALAMSEPNAGSDVVSMKL
RADRVGDRFVLNGSKMWITNGPDAHTYVIYAKTDADKGAHGITAFIVERDWKGFSRGPKLDKLGMRGSNTCE
LIFQDVEVPEENVLGAVNGGVKVLMSGLDYERVVLSGGPVGIMQACMDVVVPYIHDRRQFGQSIGEFQLVQG
KVADMYTALNASRAYLYAVAAACDRGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPTGRLLRD
AKLYEIGAGTSEIRRMLIGRELFNETR*
AnnotationID:1618GeneID:1609
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 13:01:42
Gene Name:gnyD
Confidence Code:1
GeneProduct:Citronelloyl-CoA dehydrogenase, GnyD
Cell Localization:()
Synonyms:ivd
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01156
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Acyclic isoprenoid catabolism
Homology:
>gb|AAO56240.1| (AE016865) acyl-CoA dehydrogenase, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 447

 Score =  689 bits (1779), Expect = 0.0
 Identities = 339/387 (87%), Positives = 360/387 (93%)

>gb|AAN69654.1|AE016600_4 (AE016789) isovaleryl-CoA dehydrogenase [Pseudomonas putida KT2440]
          Length = 424

 Score =  678 bits (1750), Expect = 0.0
 Identities = 336/387 (86%), Positives = 354/387 (91%)

>gb|AAM35157.1| (AE011651) acyl-CoA dehydrogenase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 387

 Score =  555 bits (1431), Expect = e-157
 Identities = 270/386 (69%), Positives = 312/386 (80%)

Structural Features:
cd01156, IVD, Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, 
which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA 
(3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA.
CD-Length = 376 residues, 100.0% aligned
Score =  673 bits (1738), Expect = 0.0
Genomic Context:
Comment:
ReferenceID:3221
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20368
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32710
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1609_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1609

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2850 PA2015_tr translation of PA2015 387 99.74 99.74 0 1981.0
88779 gb|AAG05403.1|AE004628_1 (AE004628) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 387 99.74 99.74 0 1981.0
88781 gb|AAN69654.1|AE016600_4 (AE016789) isovaleryl-CoA dehydrogenase [Pseudomonas putida KT2440] 424 79.24 83.49 37 1750.0
88782 gb|AAN54949.1|AE015633_1 (AE015633) isovaleryl-CoA dehydrogenase [Shewanella oneidensis MR-1] 389 77.63 87.91 2 1605.0
88780 gb|AAO56240.1| (AE016865) acyl-CoA dehydrogenase, putative [Pseudomonas syringae pv. tomato str. DC3000] 447 75.83 80.53 60 1779.0
GC ORFID: 44611How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2015Glimmer Score:
Start: 1526065Stop: 1524902
Length: 1164
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2015 translation of PA2015Homolog Bit Score 767.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8070 (ORF: BLASTX 686.0), t_PA2015 (ORF: GLIMMER)
GC ORF Sequence
ATGACCTATCCCAGCCTCAACTTCGCCCTCGGCGAAACCATCGACATGCTCCGCGACCAGGTCCGCGGCTTC
GTCACCGCCGAACTGCAGCCGCGCGCCGCGCAGATCGACCAGGACAACCAGTTCCCCATGGACATGTGGCGC
AAGTTCGGCGAGATGGGCCTGCTCGGCATCACCGTCGACGAGGAGTACGGCGGTTCGGCGCTGGGCTACCTG
GCACACGCCGTGGTCATGGAAGAGATCAGCCGGGCCTCGGCCTCGGTGGCGCTCTCCTATGGCGCGCATTCC
AACCTCTGCGTCAACCAGATCAAGCGCAACGGCAACGCCGAACAGAAGGCCCGCTACCTGCCGGCCCTGGTG
TCCGGCGAACACATCGGTGCGCTGGCGATGAGCGAACCCAACGCCGGCTCCGACGTGGTCTCGATGAAGCTG
CGCGCGGACCGGGTCGGCGACCGCTTCGTTCTCAACGGCAGCAAGATGTGGATCACCAACGGTCCCGATGCC
CATACCTATGTGATCTACGCCAAGACCGACGCGGACAAGGGCGCGCACGGGATCACCGCGTTCATCGTCGAG
CGCGACTGGAAAGGCTTCAGTCGCGGGCCGAAGCTGGACAAGCTGGGCATGCGCGGCTCGAACACCTGCGAA
CTGATCTTCCAGGACGTCGAGGTACCCGAGGAGAACGTCCTCGGCGCGGTCAACGGAGGGGTCAAGGTACTG
ATGAGCGGCCTCGACTACGAGCGCGTGGTGCTTTCCGGCGGCCCGGTGGGAATCATGCAGGCGTGCATGGAC
GTGGTGGTGCCGTACATCCATGACCGCCGCCAGTTCGGCCAGAGCATCGGCGAATTCCAGCTGGTCCAGGGC
AAGGTGGCCGACATGTACACCGCCCTCAACGCCAGCCGCGCCTACCTATACGCCGTGGCCGCCGCCTGCGAC
CGCGGCGAGACGACCCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAGCGCGCCACCCAGATGGCC
CTGGACGCGATCCAGATCCTCGGCGGCAACGGCTACATCAACGAGTTTCCCACCGGCCGCCTGTTGCGCGAC
GCCAAGCTCTACGAGATCGGCGCCGGCACCAGCGAGATCCGCCGCATGCTGATCGGCCGCGAGCTGTTCAAC
GAAACCCGCTGA