ViewGene
Locus Name:
GeneID:
Location:

GeneID:1608
TrivialName: PA14_04420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04420
PAO1 Ortholog Locus:PA0338
Sequence Length:1131
Protein Length:376
Start: 395075
Stop: 396205
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03727.1|AE004471_10 (AE004471) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 372/376 (98%), Positives = 375/376 (99%)
Sequence:
GTGCGGCGCTTACGCTTTCCCCGCAAGCGTATAGACTGCCTGCCATTCGGTAGAGGCCACTGGCCAGTCGAA
CGTGCGAGGGATTGCCGCAAAATGGACGAACGGGCGTCGAAGCCGCCAGGTCTTCTTCCGCTGTCACGCGAA
GACCTTGAGAAAACCCTGCGATATGCCCTGGAGATCGTCAGCGACGGGATCTGGGACTGGAACATCGCGACC
AACCAGGTCAGCCGCAGCGCCGGCTGGTACCTGATGCTCGGCTATCCGCCACATAGCCTGCCGGAGAGCGTG
GAGACCTGGAAGAACATCATCCATCCCGAGGACTATCCGCGGGTGATGGCCAGCTTCCAGGCCTACCTCGAC
GGCGAAAGCCCGGAATACTGCGAGGAATACCGCTGCCGCACCTACAGCGGGGATTACCTGTGGATCAGCGAT
CGCGGGCGTTTCGTCGAGTTCGACGAGCGCGGCGAGCCACGGCGGATGATCGGTGCGCACCACGAGATCCAT
CAGCGCAAGCTGGTCGAGCTGGAGTTGCAGCAGCGCAACGAGGAACTGTTCGACTGGAACCGGCGTCTCGAG
GACCTGGTGGCCGAGCGCACCGAGGCGCTGCACCGGGTCAACCAGGCGCTGGCCTCGAAGATGGCCGAGGCC
CAGCGCCTGAGCGAAATCGATCCGCTCACCGAGCTGTACAACCGGCGCAAGTTCGAGCAGTGCCTGCACCAT
GAATGGATGCGCCGGCAGCGCCATGGACGCGCGACGGCACTGATGATGATCGATGTCGATCACTTCAAGCGG
ATCAACGACCTGTTCGGCCACTCCACCGGCGATCGCGTGCTGGTCGCCTTCGGCCGCCTGGTCGCCAGCGAG
CTGCGCGAGGTCGACGTGCTGGCGCGCTGGGGCGGCGAGGAGTTCATCCTGCTGCTTCCGGAAACCGGCCTG
GAGGCCGCGGCGGCCTTGGCCGAACGCCTGCGCCAGCGGGTTCGCTCGCAGTCCTTCGAGATGGGCGAGCGG
TTGACCGCCAGCTTCGGCGTCGGCGTGCTGAACGATGGCGAGACCCTCGACCTGCTGCTGTGCCGGGTGGAC
GACGCCCTCTATCGGGCCAAGCAGCGTCGCGATTGCGTGGCCTGTTGCTGA
Translation:
MRRLRFPRKRIDCLPFGRGHWPVERARDCRKMDERASKPPGLLPLSREDLEKTLRYALEIVSDGIWDWNIAT
NQVSRSAGWYLMLGYPPHSLPESVETWKNIIHPEDYPRVMASFQAYLDGESPEYCEEYRCRTYSGDYLWISD
RGRFVEFDERGEPRRMIGAHHEIHQRKLVELELQQRNEELFDWNRRLEDLVAERTEALHRVNQALASKMAEA
QRLSEIDPLTELYNRRKFEQCLHHEWMRRQRHGRATALMMIDVDHFKRINDLFGHSTGDRVLVAFGRLVASE
LREVDVLARWGGEEFILLLPETGLEAAAALAERLRQRVRSQSFEMGERLTASFGVGVLNDGETLDLLLCRVD
DALYRAKQRRDCVACC*
AnnotationID:1617GeneID:1608
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box protein
Cell Localization:()
Synonyms:PA0338
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00267
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00267, DUF1, Domain of Unknown Function with GGDEF motif.  
Likely to participate in prokaryotic signalling processes.
CD-Length = 172 residues,  94.8% aligned
Score =  162 bits (411), Expect = 7e-41
Identities = 78/163 (47%), Positives = 103/163 (63%), Gaps = 4/163 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14395




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20366




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33681




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1608_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1608
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2845
                           PA0338_tr
                           translation of PA0338
                           376
                           98.93
                           99.73
                           0
                           1982.0
     

     
     
88711
                           gb|AAG03727.1|AE004471_10
                           (AE004471) hypothetical protein PA0338 [Pseudomonas aeruginosa PAO1]
                           376
                           98.67
                           99.73
                           0
                           1979.0
     

     
     
88712
                           gb|AAN69983.1|AE016636_6
                           (AE016790) sensory box protein [Pseudomonas putida KT2440]
                           378
                           40.21
                           54.76
                           48
                           697.0
     

     
     
88727
                           gb|AAO55827.1|
                           (AE016864) sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           390
                           28.97
                           42.05
                           81
                           329.0
     

     
     
88726
                           gb|AAR35017.1|
                           (AE017212) GGDEF/response regulator receiver domain protein [Geobacter sulfurreducens PCA]
                           400
                           28.50
                           38.50
                           108
                           321.0
     

     






      

          
GC ORFID: 44610How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0338Glimmer Score: 

          
Start: 6196417Stop: 6197547

          
Length: 1131


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0338 translation of PA0338Homolog Bit Score 768.0

          
Other Homologs:  t_PA0169 (ORF: BLASTX 133.0), t_PA3702 (ORF: BLASTX 112.0), t_PA0338 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGGCGCTTACGCTTTCCCCGCAAGCGTATAGACTGCCTGCCATTCGGTAGAGGCCACTGGCCAGTCGAA 
CGTGCGAGGGATTGCCGCAAAATGGACGAACGGGCGTCGAAGCCGCCAGGTCTTCTTCCGCTGTCACGCGAA 
GACCTTGAGAAAACCCTGCGATATGCCCTGGAGATCGTCAGCGACGGGATCTGGGACTGGAACATCGCGACC 
AACCAGGTCAGCCGCAGCGCCGGCTGGTACCTGATGCTCGGCTATCCGCCACATAGCCTGCCGGAGAGCGTG 
GAGACCTGGAAGAACATCATCCATCCCGAGGACTATCCGCGGGTGATGGCCAGCTTCCAGGCCTACCTCGAC 
GGCGAAAGCCCGGAATACTGCGAGGAATACCGCTGCCGCACCTACAGCGGGGATTACCTGTGGATCAGCGAT 
CGCGGGCGTTTCGTCGAGTTCGACGAGCGCGGCGAGCCACGGCGGATGATCGGTGCGCACCACGAGATCCAT 
CAGCGCAAGCTGGTCGAGCTGGAGTTGCAGCAGCGCAACGAGGAACTGTTCGACTGGAACCGGCGTCTCGAG 
GACCTGGTGGCCGAGCGCACCGAGGCGCTGCACCGGGTCAACCAGGCGCTGGCCTCGAAGATGGCCGAGGCC 
CAGCGCCTGAGCGAAATCGATCCGCTCACCGAGCTGTACAACCGGCGCAAGTTCGAGCAGTGCCTGCACCAT 
GAATGGATGCGCCGGCAGCGCCATGGACGCGCGACGGCACTGATGATGATCGATGTCGATCACTTCAAGCGG 
ATCAACGACCTGTTCGGCCACTCCACCGGCGATCGCGTGCTGGTCGCCTTCGGCCGCCTGGTCGCCAGCGAG 
CTGCGCGAGGTCGACGTGCTGGCGCGCTGGGGCGGCGAGGAGTTCATCCTGCTGCTTCCGGAAACCGGCCTG 
GAGGCCGCGGCGGCCTTGGCCGAACGCCTGCGCCAGCGGGTTCGCTCGCAGTCCTTCGAGATGGGCGAGCGG 
TTGACCGCCAGCTTCGGCGTCGGCGTGCTGAACGATGGCGAGACCCTCGACCTGCTGCTGTGCCGGGTGGAC 
GACGCCCTCTATCGGGCCAAGCAGCGTCGCGATTGCGTGGCCTGTTGCTGA