ViewGene
Locus Name:
GeneID:
Location:

GeneID:1607
TrivialName: PA14_73160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73160
PAO1 Ortholog Locus:PA5548
Sequence Length:1206
Protein Length:401
Start: 6515098
Stop: 6516303
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08933.1|AE004967_4 (AE004967) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 395/401 (98%), Positives = 399/401 (99%)
Sequence:
ATGAACCAGAAAATTTCCCCGCCTTCACAGAAGCTCGACGGCCTGTTCCTGCTGGCCCTGTCGATGGCCGTG
TTCTTCGTCGGCGTGACCGAGTTCATGCTGTCCTCCATGCTCGGGCCGCTGGCGCAGGCGTTCCACACCACT
ACCAGCGGCGCCGCCTGGCTGATCTCCAGCTACGCGTTCTCCTATGCGATCGCCGCGCCGTTGCTGGGCTAC
TTCTCCGACCGCATGCAACGCAGGAAGCTGCTGCTGCTCGCCCTGATCCTCTTCGCCGTCGATACCCTGGCC
ATCGTCATCGCCCCGACCCTGGAAATTGCCGTTGTCCTGCGGGTAATCGGGGGCATCGCCTCGGCAATCATC
ATTCCGACCACCTTCGCCCTGGTCGCGGAGGTGGTCGCCCCGCAAAGACAGGCCGGTGCCATGGGCCAGGTG
ATGCTCGGCATGACCCTCGGCATTGCCGCCGGCCCGGCACTGGCCGGCCTCCTCTCGGACTTCTTCGGCTGG
GCGACGCCCTTCCTGATGGTCTCGTGCGGTTGCGTGCTGGTCTTCCTGATGGCGCGCCAGCGCCTTCCCGTG
CAAGCCGTGGCACCGCGCGCCGAGGGCCACGCGCTGGGCTGGTGCAGGCAATGGAGCATCCTCAGGCCACTG
ATCGCCAAGGGTGCCTGGAACGGCACCGGGGTCGCCGGCCTGCTTCTCTCGGGAGAGGTGCTGCGCCAGCGC
TACGGCTTCAGCACCGCGCAGATAGGCATCAGCATCGCCGCCTTCGGCGTGGGCCTGGCCGTGGGGAACCTC
GCCGCGGGTTACCTGCGGCGCTACCTGAAGCGCGACGAAGACATGCTCCTGCTGGTGCTGGCGCTCCTGGTG
CTATCGATGTCGACCTTCATGCTCCTGCCGCTACCGTTGCCCGTGGCGCTCTTCTGCCTGGGCGCCTGGGGC
GCCGCGCTGGGCCTGGGCGCGCCGGCGGGCACGGTGGTACTCGCCTCGCGCTCCGGGCCGGACAAGGGCATG
GTGCTGTCGTTCGCCGAGACGTTCAACAACATCGCCATTCTCGCCAGCGTGCCCCTGGCTGTGCGACTGCTG
GAGCTGAAGGGGCCGCCCGCCACCCTGTGGGTATTGGGCATCGGCCTGGGGATCGGCGCCTGGTTCACCGTG
CTGGACTGGTTCGCCAGCCGCAGGAGCGACGAGGCGCTGCCGTTGCGCGATTGA
Translation:
MNQKISPPSQKLDGLFLLALSMAVFFVGVTEFMLSSMLGPLAQAFHTTTSGAAWLISSYAFSYAIAAPLLGY
FSDRMQRRKLLLLALILFAVDTLAIVIAPTLEIAVVLRVIGGIASAIIIPTTFALVAEVVAPQRQAGAMGQV
MLGMTLGIAAGPALAGLLSDFFGWATPFLMVSCGCVLVFLMARQRLPVQAVAPRAEGHALGWCRQWSILRPL
IAKGAWNGTGVAGLLLSGEVLRQRYGFSTAQIGISIAAFGVGLAVGNLAAGYLRRYLKRDEDMLLLVLALLV
LSMSTFMLLPLPLPVALFCLGAWGAALGLGAPAGTVVLASRSGPDKGMVLSFAETFNNIAILASVPLAVRLL
ELKGPPATLWVLGIGLGIGAWFTVLDWFASRRSDEALPLRD*
AnnotationID:1616GeneID:1607
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA5548
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):carbon compond metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues, 100.0% aligned
Score =  202 bits (516), Expect = 5e-53
Identities = 110/396 (27%), Positives = 168/396 (42%), Gaps = 5/396 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20364




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33335




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1607_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1607
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2844
                           PA5548_tr
                           translation of PA5548
                           401
                           98.50
                           99.50
                           0
                           1984.0
     

     
     
88708
                           gb|AAG08933.1|AE004967_4
                           (AE004967) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           401
                           98.50
                           99.50
                           0
                           1984.0
     

     
     
88709
                           gb|AAO17230.1|
                           (AF346500) Orf76 [Photorhabdus luminescens]
                           404
                           56.93
                           71.03
                           8
                           1129.0
     

     
     
88710
                           emb|CAE13222.1|
                           (BX571862) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           404
                           56.18
                           69.80
                           17
                           1117.0
     

     






      

          
GC ORFID: 44609How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5548Glimmer Score: 

          
Start: 5778787Stop: 5779992

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5548 translation of PA5548Homolog Bit Score 768.0

          
Other Homologs:  t_PA5548 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGAAAATTTCCCCGCCTTCACAGAAGCTCGACGGCCTGTTCCTGCTGGCCCTGTCGATGGCCGTG 
TTCTTCGTCGGCGTGACCGAGTTCATGCTGTCCTCCATGCTCGGGCCGCTGGCGCAGGCGTTCCACACCACT 
ACCAGCGGCGCCGCCTGGCTGATCTCCAGCTACGCGTTCTCCTATGCGATCGCCGCGCCGTTGCTGGGCTAC 
TTCTCCGACCGCATGCAACGCAGGAAGCTGCTGCTGCTCGCCCTGATCCTCTTCGCCGTCGATACCCTGGCC 
ATCGTCATCGCCCCGACCCTGGAAATTGCCGTTGTCCTGCGGGTAATCGGGGGCATCGCCTCGGCAATCATC 
ATTCCGACCACCTTCGCCCTGGTCGCGGAGGTGGTCGCCCCGCAAAGACAGGCCGGTGCCATGGGCCAGGTG 
ATGCTCGGCATGACCCTCGGCATTGCCGCCGGCCCGGCACTGGCCGGCCTCCTCTCGGACTTCTTCGGCTGG 
GCGACGCCCTTCCTGATGGTCTCGTGCGGTTGCGTGCTGGTCTTCCTGATGGCGCGCCAGCGCCTTCCCGTG 
CAAGCCGTGGCACCGCGCGCCGAGGGCCACGCGCTGGGCTGGTGCAGGCAATGGAGCATCCTCAGGCCACTG 
ATCGCCAAGGGTGCCTGGAACGGCACCGGGGTCGCCGGCCTGCTTCTCTCGGGAGAGGTGCTGCGCCAGCGC 
TACGGCTTCAGCACCGCGCAGATAGGCATCAGCATCGCCGCCTTCGGCGTGGGCCTGGCCGTGGGGAACCTC 
GCCGCGGGTTACCTGCGGCGCTACCTGAAGCGCGACGAAGACATGCTCCTGCTGGTGCTGGCGCTCCTGGTG 
CTATCGATGTCGACCTTCATGCTCCTGCCGCTACCGTTGCCCGTGGCGCTCTTCTGCCTGGGCGCCTGGGGC 
GCCGCGCTGGGCCTGGGCGCGCCGGCGGGCACGGTGGTACTCGCCTCGCGCTCCGGGCCGGACAAGGGCATG 
GTGCTGTCGTTCGCCGAGACGTTCAACAACATCGCCATTCTCGCCAGCGTGCCCCTGGCTGTGCGACTGCTG 
GAGCTGAAGGGGCCGCCCGCCACCCTGTGGGTATTGGGCATCGGCCTGGGGATCGGCGCCTGGTTCACCGTG 
CTGGACTGGTTCGCCAGCCGCAGGAGCGACGAGGCGCTGCCGTTGCGCGATTGA