ViewGene
Locus Name:
GeneID:
Location:

GeneID:1606
TrivialName: PA14_71910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71910
PAO1 Ortholog Locus:PA5447
Sequence Length:1146
Protein Length:381
Start: 6410033
Stop: 6408888
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08832.1|AE004958_2 (AE004958) glycosyltransferase WbpZ [Pseudomonas aeruginosa PAO1]
Identities = 379/381 (99%), Positives = 380/381 (99%)
Sequence:
ATGCGGGTACTGCACTTCTACAAGACCTACCTGAGCGAGACGGTAGGCGGGATCGAACAGGTGATCTTCCAG
CTTTGCGAGAGCAGCGGGTCGTGGGGGATCGACAACCACGTCCTGACCCTGAGCAGCGACCCGCATCCGCCT
GTCGTGCCCTTCGGCGGACATGTGGTGCATCGCGCCAGGCTCGACCTGCAGCTCGCCTCCACCGGTTTTTCC
CTGAGCGTGTTCAAGCAGTTCCGCGAGCTGGCGGCGGAGGCGGACGTGGTCAACTACCACTTCCCCTGGCCG
TTCATGGACCTGGTGCATTTCCTCACCGGTATGAACAAGCCGAGCGTGGTCACCTACCATTCGGACATCATC
CGCCAGCGCGTCCTGTTGAAACTGTACCGGCCGCTGATGAGTCGTTTCCTCCACAGCGTGGATCGCATCGTC
GCAGCCTCGCCCAACTACTTCAGTACCAGCGACGTGCTCCGCCAGTACCGGGAAAAGACCCGGGTGATCACC
TACGGCCTGGACAAGGACGGCTACCCGAAGCCTGCGGCACAGCGTCTGGAGCACTGGCGAGAGAAACTCGGG
CCGCGGTTCTTCCTGTTCGTCGGGGTGATGCGTTACTACAAGGGCCTGCATATCCTGCTGGATGCGTTGCAG
GGCACCGATTACCCGGTGGTGATCGTCGGTGCCGGGCCGTTGCAGGCCGAGCTGTATGCCCAGGCCGCGGCG
CTGGGGTTGCGCAACGTGCACTTCCTCGGGCGGGTGGACGACGAGGACAAGGTCGCCCTGCTGCAACTCAGC
TACGCCATGGTCTTTCCGTCGCACCTGCGTTCCGAGGCGTTCGGCATCTCCCTGCTGGAGGGCGCGATGTAC
GGCAAGCCGATGATCTCCAGCGAGATCGGCACCGGCACCAGCTACATCAATATCCATGGCGAGACCGGCCTG
GTCGTGCCGCCCAGCCAGCCGGCCGCGTTTCGCCAAGCGATGCGCTGGCTCTGGGAGCATCCGCAGCAGGCG
GAGGATATGGGCAGGAACGCGGAGGCCCGCTATCGGCAACTGTTCACCGCCGAAGAGATGGGGCGTCGCTGG
AGCGAGCTGTACCGTGAACTGCTGGAGGAAAAGGCTTCTTCCAGATACGTGAAGGCCGCTCGGTAA
Translation:
MRVLHFYKTYLSETVGGIEQVIFQLCESSGSWGIDNHVLTLSSDPHPPVVPFGGHVVHRARLDLQLASTGFS
LSVFKQFRELAAEADVVNYHFPWPFMDLVHFLTGMNKPSVVTYHSDIIRQRVLLKLYRPLMSRFLHSVDRIV
AASPNYFSTSDVLRQYREKTRVITYGLDKDGYPKPAAQRLEHWREKLGPRFFLFVGVMRYYKGLHILLDALQ
GTDYPVVIVGAGPLQAELYAQAAALGLRNVHFLGRVDDEDKVALLQLSYAMVFPSHLRSEAFGISLLEGAMY
GKPMISSEIGTGTSYINIHGETGLVVPPSQPAAFRQAMRWLWEHPQQAEDMGRNAEARYRQLFTAEEMGRRW
SELYRELLEEKASSRYVKAAR*
AnnotationID:1615GeneID:1606
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 20:08:33
Gene Name:wbpZ
Confidence Code:1
GeneProduct:glycosyltransferase WbpZ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0438,pfam00534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67421.1|AE016369_6 (AE016780) glycosyl transferase WbpZ [Pseudomonas putida KT2440]
          Length = 404

 Score =  426 bits (1096), Expect = e-119
 Identities = 209/368 (56%), Positives = 272/368 (73%)

>gb|AAN29471.1|AE014362_7 (AE014362) glycosyl transferase, group 1 family protein [Brucella
           suis 1330]
          Length = 369

 Score =  395 bits (1014), Expect = e-109
 Identities = 194/369 (52%), Positives = 262/369 (71%)








 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]
CD-Length = 381 residues, 100.0% aligned
Score =  134 bits (335), Expect = 2e-32
Identities = 113/391 (28%), Positives = 168/391 (42%), Gaps = 30/391 (7%)

pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
CD-Length = 172 residues,  94.2% aligned
Score =  120 bits (303), Expect = 2e-28
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 10/165 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20362




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34665




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1606_cdd.html


    		




 
URL:

















    ReferenceID:35627




  
Author/Investigator(s):
        Rocchetta HL, Burrows LL, Pacan JC, Lam JS.





  
Title:
        Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesis.




  
PubMed:
        9680202


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1103-19.

Erratum in:
    * Mol Microbiol 1998 Dec;30(5):1131.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9680202









           
Homologs By Global Alignment 

           

       



     
Gene ID:1606
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2843
                           PA5447_tr
                           translation of PA5447
                           381
                           99.47
                           99.73
                           0
                           1984.0
     

     
     
88677
                           gb|AAG08832.1|AE004958_2
                           (AE004958) glycosyltransferase WbpZ [Pseudomonas aeruginosa PAO1]
                           381
                           99.47
                           99.73
                           0
                           1984.0
     

     
     
88678
                           gb|AAC38772.1|
                           (AF010183) glycosyltransferase WbpZ [Pseudomonas aeruginosa]
                           381
                           98.95
                           99.21
                           0
                           1975.0
     

     
     
88681
                           gb|AAN29471.1|AE014362_7
                           (AE014362) glycosyl transferase, group 1 family protein [Brucella suis 1330]
                           381
                           50.91
                           68.76
                           12
                           1014.0
     

     
     
88682
                           gb|AAM34934.1|
                           (AE011627) glycosyltransferase [Xanthomonas axonopodis pv. citri str. 306]
                           398
                           50.75
                           63.31
                           25
                           991.0
     

     






      

          
GC ORFID: 44608How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5447Glimmer Score: 

          
Start: 5673722Stop: 5672577

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5447 translation of PA5447Homolog Bit Score 768.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5114 (ORF: BLASTX 454.0), t_PA5447 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGGTACTGCACTTCTACAAGACCTACCTGAGCGAGACGGTAGGCGGGATCGAACAGGTGATCTTCCAG 
CTTTGCGAGAGCAGCGGGTCGTGGGGGATCGACAACCACGTCCTGACCCTGAGCAGCGACCCGCATCCGCCT 
GTCGTGCCCTTCGGCGGACATGTGGTGCATCGCGCCAGGCTCGACCTGCAGCTCGCCTCCACCGGTTTTTCC 
CTGAGCGTGTTCAAGCAGTTCCGCGAGCTGGCGGCGGAGGCGGACGTGGTCAACTACCACTTCCCCTGGCCG 
TTCATGGACCTGGTGCATTTCCTCACCGGTATGAACAAGCCGAGCGTGGTCACCTACCATTCGGACATCATC 
CGCCAGCGCGTCCTGTTGAAACTGTACCGGCCGCTGATGAGTCGTTTCCTCCACAGCGTGGATCGCATCGTC 
GCAGCCTCGCCCAACTACTTCAGTACCAGCGACGTGCTCCGCCAGTACCGGGAAAAGACCCGGGTGATCACC 
TACGGCCTGGACAAGGACGGCTACCCGAAGCCTGCGGCACAGCGTCTGGAGCACTGGCGAGAGAAACTCGGG 
CCGCGGTTCTTCCTGTTCGTCGGGGTGATGCGTTACTACAAGGGCCTGCATATCCTGCTGGATGCGTTGCAG 
GGCACCGATTACCCGGTGGTGATCGTCGGTGCCGGGCCGTTGCAGGCCGAGCTGTATGCCCAGGCCGCGGCG 
CTGGGGTTGCGCAACGTGCACTTCCTCGGGCGGGTGGACGACGAGGACAAGGTCGCCCTGCTGCAACTCAGC 
TACGCCATGGTCTTTCCGTCGCACCTGCGTTCCGAGGCGTTCGGCATCTCCCTGCTGGAGGGCGCGATGTAC 
GGCAAGCCGATGATCTCCAGCGAGATCGGCACCGGCACCAGCTACATCAATATCCATGGCGAGACCGGCCTG 
GTCGTGCCGCCCAGCCAGCCGGCCGCGTTTCGCCAAGCGATGCGCTGGCTCTGGGAGCATCCGCAGCAGGCG 
GAGGATATGGGCAGGAACGCGGAGGCCCGCTATCGGCAACTGTTCACCGCCGAAGAGATGGGGCGTCGCTGG 
AGCGAGCTGTACCGTGAACTGCTGGAGGAAAAGGCTTCTTCCAGATACGTGAAGGCCGCTCGGTAA